Jose Lugo-Martinez - Publications, H-index & Citations

Jose Lugo-Martinez

Carnegie Mellon University

12H指数

39论文数

3.3K被引数

收录论文 12

发表时间

Evaluation of statistical differential analysis methods for identification of senescent cells using single-cell transcriptomics

Cell Reports Methods

IF4.5

2026-01-22

OAAI

Dongmei Li; Pinxin Liu; Irfan Rahman; Martin Zand; Gloria Pryhuber; Timothy Dye; Maciej Goniewicz; Aditi Uday Gurkar; Melanie Königshoff; Oliver Eickelberg; Ana Mora; Mauricio Rojas; Qin Ma; Jose Lugo-Martinez; Ziv Bar-Joseph; Serafina Lanna; Toren Finkel; Zidian Xie

Advancing biological understanding of cellular senescence with computational multiomics 通过计算多组学推进对细胞衰老的生物学理解

Nature Genetics

IF0

2025-09-15

PREAI

Sheng Li; Paula A. Agudelo Garcia; Constantin Aliferis; Michael J. Becich; Jazmin Calyeca; Benjamin D. Cosgrove; Jennifer Elisseeff; Negin Farzad; Elana J. Fertig; Carolyn Glass; Liangcai Gu; Qianjiang Hu; Zhicheng Ji; Melanie Königshoff; Nathan K. LeBrasseur; Dongmei Li; Anjun Ma; Qin Ma; Vilas Menon; Jacob T. Mitchell; Ana L. Mora; Sushma Nagaraj; Andrew C. Nelson; Laura J. Niedernhofer; Mauricio Rojas; Hash Brown Taha; Jinhua Wang; Siyuan Wang; Pei-Hsun Wu; Jichun Xie; Ming Xu; Miao Yu; Xu Zhang; Yue Zhao; Peter D. Adams; Cristina Aguayo-Mazzucato; Darren J. Baker; Christopher Benz; David A. Bernlohr; Marta Bueno; Jin Chen; Bennett G. Childs; Jeffrey H. Chuang; Dongjun Chung; Mythili Dileepan; Li Ding; Mingze Dong; Francesca Duncan; Archibald Enninful; William F. Flynn; Ana Catarina Franco; David Furman; Vesna Garovic; Stephanie Halene; Allison B. Herman; Ann V. Hertzel; Kanako Iwasaki; Hyeongseon Jeon; Jeon Woong Kang; Shilpita Karmakar; James L. Kirkland; Ron Korstanje; Erich Kummerfeld; Jun Hee Lee; Yang Liu; Yao Lu; Jose Lugo-Martinez; Helene Martini; Simon Melov; Nicolas Musi; João F. Passos; Samuel T. Peters; Irfan Rahman; Ramalakshmi Ramasamy; Alexandra N. Rindone; Paul D. Robbins; Paul Robson; Jhonny Rodriguez-Lopez; Lorena Rosas; Nadia Rosenthal; Marissa J. Schafer; Birgit Schilling; Elizabeth L. Schmidt; Kevin Schneider; Kaustav Sengupta; Jian Shu; Peter T. C. So; Li Sun; Tamar Tchkonia; Marcos G. Teneche; Natalia Vanegas; Julia Wang; Juan Xie; Shanshan Yin; Ke Zhang; Quan Zhu; Rong Fan

Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A

HUMAN GENETICS

IF3.6

2025-03-01

OAAI

Jain, Shantanu; Trinidad, Marena; Nguyen, Thanh Binh; Jones, Kaiya; Neto, Santiago Diaz; Ge, Fang; Glagovsky, Ailin; Jones, Cameron; Moran, Giankaleb; Wang, Boqi; Rahimi, Kobra; Calici, Suemeyra Zeynep; Cedillo, Luis R.; Berardelli, Silvia; Ozden, Buse; Chen, Ken; Katsonis, Panagiotis; Williams, Amanda; Lichtarge, Olivier; Rana, Sadhna; Pradhan, Swatantra; Srinivasan, Rajgopal; Sajeed, Rakshanda; Joshi, Dinesh; Faraggi, Eshel; Jernigan, Robert; Kloczkowski, Andrzej; Xu, Jierui; Song, Zigang; Ozkan, Selen; Padilla, Natalia; de la Cruz, Xavier; Acuna-Hidalgo, Rocio; Grafmueller, Andrea; Barron, Laura T. Jimenez; Manfredi, Matteo; Savojardo, Castrense; Babbi, Giulia; Martelli, Pier Luigi; Casadio, Rita; Sun, Yuanfei; Zhu, Shaowen; Shen, Yang; Pucci, Fabrizio; Rooman, Marianne; Cia, Gabriel; Raimondi, Daniele; Hermans, Pauline; Kwee, Sofia; Chen, Ella; Astore, Courtney; Kamandula, Akash; Pejaver, Vikas; Ramola, Rashika; Velyunskiy, Michelle; Zeiberg, Daniel; Mishra, Reet; Sterling, Teague; Goldstein, Jennifer L.; Lugo-Martinez, Jose; Kazi, Sufyan; Li, Sindy; Long, Kinsey; Brenner, Steven E.; Bakolitsa, Constantina; Radivojac, Predrag; Suhr, Dean; Suhr, Teryn; Clark, Wyatt T.

scDOT: optimal transport for mapping senescent cells in spatial transcriptomics scDOT: 在空间转录组中映射衰老细胞的最佳运输

GENOME BIOLOGY

IF9.4

2024-11-08

OAAI

Nguyen, Nam D.; Rosas, Lorena; Khaliullin, Timur; Jiang, Peiran; Hasanaj, Euxhen; Ovando-Ricardez, Jose A.; Bueno, Marta; Rahman, Irfan; Pryhuber, Gloria S.; Li, Dongmei; Ma, Qin; Finkel, Toren; Konigshoff, Melanie; Eickelberg, Oliver; Rojas, Mauricio; Mora, Ana L.; Lugo-Martinez, Jose; Bar-Joseph, Ziv

Recovering single-cell expression profiles from spatial transcriptomics with scResolve

CELL REPORTS METHODS

IF4.5

2024-10-01

OAAI

Chen, Hao; Lee, Young Je; Ovando-Ricardez, Jose A.; Rosas, Lorena; Rojas, Mauricio; Mora, Ana L.; Bar-Joseph, Ziv; Lugo-Martinez, Jose

A hybrid positive unlabeled learning framework for uncovering scaffolds across human proteome by measuring the propensity to drive phase separation

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-02-08

PREAI

Jiang, Peiran; Cai, Ruoxi; Lugo-Martinez, Jose; Guo, Yaping

Integrating longitudinal clinical and microbiome data to predict growth faltering in preterm infants

JOURNAL OF BIOMEDICAL INFORMATICS

IF4.5

2022-04-01

OAAI

Lugo-Martinez, Jose; Xu, Siwei; Levesque, Justine; Gallagher, Daniel; Parker, Leslie A.; Neu, Josef; Stewart, Christopher J.; Berrington, Janet E.; Embleton, Nicholas D.; Young, Gregory; Gregory, Katherine E.; Good, Misty; Tandon, Arti; Genetti, David; Warren, Tracy; Bar-Joseph, Ziv

Dynamic Bayesian Networks for Integrating Multi-omics Time Series Microbiome Data 用于集成多组学时间序列微生物组数据的动态贝叶斯网络

MSYSTEMS

IF4.6

2021-04-27

OAAI

Ruiz-Perez, Daniel; Lugo-Martinez, Jose; Bourguignon, Natalia; Mathee, Kalai; Lerner, Betiana; Bar-Joseph, Ziv; Narasimhan, Giri

Inferring the molecular and phenotypic impact of amino acid variants with MutPred2 用MutPred2推断氨基酸变体的分子和表型影响

NATURE COMMUNICATIONS

IF15.7

2020-11-20

347

OAAI

Pejaver, Vikas; Urresti, Jorge; Lugo-Martinez, Jose; Pagel, Kymberleigh A.; Lin, Guan Ning; Nam, Hyun-Jun; Mort, Matthew; Cooper, David N.; Sebat, Jonathan; Iakoucheva, Lilia M.; Mooney, Sean D.; Radivojac, Predrag

Dynamic interaction network inference from longitudinal microbiome data 基于纵向微生物组数据的动态交互网络推断

MICROBIOME

IF12.7

2019-04-02

OAAI

Lugo-Martinez, Jose; Ruiz-Perez, Daniel; Narasimhan, Giri; Bar-Joseph, Ziv

Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data 面向生物大数据的超高维非线性特征选择

IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

IF10.4

2018-07-01

OAAI

Yamada, Makoto; Tang, Jiliang; Lugo-Martinez, Jose; Hodzic, Ermin; Shrestha, Raunak; Saha, Avishek; Ouyang, Hua; Yin, Dawei; Mamitsuka, Hiroshi; Sahinalp, Cenk; Radivojac, Predrag; Menczer, Filippo; Chang, Yi

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2013-05-24

633

OAAI

Han, Mira V.; Thomas, Gregg W. C.; Lugo-Martinez, Jose; Hahn, Matthew W.

研究方向