Shenqin Yao - Publications, H-index & Citations

Shenqin Yao

Allen Institute for Brain Science

24H指数

63论文数

3.9K被引数

收录论文 16

发表时间

Connecting single-cell transcriptomes to projectomes in the mouse visual cortex 将小鼠视觉皮层中的单细胞转录组与投射组联系起来

Nature

IF48.5

2026-07-01

OAAI

Staci A. Sorensen; Nathan W. Gouwens; Yun Wang; Matt Mallory; Agata Budzillo; Rachel Dalley; Brian R. Lee; Olga Gliko; Hsien-chi Kuo; Xiuli Kuang; Rusty Mann; Leila Ahmadinia; Lauren Alfiler; Fahimeh Baftizadeh; Katherine S. Baker; Sarah Bannick; Darren Bertagnolli; Kris Bickley; Phil Bohn; Jasmine Bomben; Chris Bowman; Gabriella Boyer; Krissy Brouner; Dillan Brown; Alex Cahoon; Natalie Chen; Chao Chen; Kai Chen; Maggie Chvilicek; Forrest Collman; Tanya L. Daigle; Tim Dawes; Rebecca de Frates; Nick Dee; Maxwell DePartee; Tom Egdorf; Laila El-Hifnawi; Rachel Enstrom; Luke Esposito; Colin Farrell; Rohan Gala; Clare Gamlin; Amanda Gary; Andrew Glomb; Olena Gerasymchuk; Jeff Goldy; Hong Gu; Kristen Hadley; Mike Hawrylycz; Alex Henry; Dijon Hill; Karla E. Hirokawa; Zili Huang; Katelyn Johnson; Zoe Juneau; Sara Kebede; Lisa Kim; Lauren Kruse; Changkyu Lee; Arielle L. Leon; Phil Lesnar; Quinn Lheureux; Anan Li; Yaoyao Li; Elizabeth Liang; Katie Link; Michelle Maxwell; Medea McGraw; Delissa A. McMillen; Alice Mukora; Lindsay Ng; Thomas Ochoa; Aaron Oldre; Daniel Park; Christina Alice Pom; Zoran Popovich; Lydia Potekhina; Ram Rajanbabu; Shea Ransford; Melissa R. Reding; Augustin Ruiz; David Sandman; Martin Schroedter; Josh Sevigny; Lyudmila Shulga; La’Akea Siverts; Cliff R. Slaughterbeck; Kimberly A. Smith; Michelle Stoecklin; Josef Sulc; Susan M. Sunkin; Michael Tieu; Jonathan T. Ting; Jessica Trinh; Ramel Velasco; Sara Vargas; Dave Vumbaco; Miranda Walker; Micheal Wang; Adrian Wanner; Jack Waters; Mirah Wells; Grace Williams; Julia A. Wilson; Wei Xiong; Ed S. Lein; Jim Berg; Brian E. Kalmbach; Shenqin Yao; Hui Gong; Qingming Luo; Quanxin Wang; Lydia Ng; Uygar Sümbül; Zizhen Yao; Tim Jarsky; Bosiljka Tasic; Hongkui Zeng

Whole-neuron morphology and genetic identity define cell types and reveal principles of brain-wide connectivity 全神经元形态和遗传身份定义细胞类型并揭示全脑连接原则

Cell Reports

IF6.9

2026-06-01

PREAI

Wang, Yun; Kuo, Hsien-Chi; Kuang, Xiuli; Yao, Shenqin; Lesnar, Phil; Ng, Lydia; Li, Yaoyao; El-Hifnawi, Laila; Chen, Natalie; Zhang, Kasey; Li, Eric M.; Ben-Simon, Yoav; Ding, Song-Lin; Wang, Quanxin; Karlsson, Totte; Dalley, Rachel; Williams, Grace; Xiong, Wei; Chen, Chao; Chen, Kai; Huang, Zili; Yu, Zhi-Feng; Xu, Wen-Jie; Ahmadinia, Leila; Walling-Bell, Sarah; Andrade, Julia; Gliko, Olga; Mallory, Matt; Farrel, Colin; Sutton, Ben; Jin, Kelly; Yao, Zizhen; Halterman, Carliana; Ronellenfitch, Kara; Esposito, Luke; Sunkin, Susan; Kruse, Lauren; Luo, Qingming; Gong, Hui; Li, Anan; Li, Xiangning; Qu, Jia; Choi, Hannah; Mihalas, Stefan; Zhuang, Jun; Sorensen, Staci

Genoarchitecture and input–output organization of the mouse basal ganglia and thalamic parafascicular nucleus 小鼠基底神经节和丘脑旁丘脑核的基因架构与输入-输出组织

Nature Neuroscience

IF20

2026-04-28

OAAI

Quanxin Wang; Ashwin Bhandiwad; Nathan W. Gouwens; Shenqin Yao; Yun Wang; Xiuli Kuang; Anan Li; Xiangning Li; Rachel Dalley; Hsien-Chi Kuo; Phil Lesnar; Wenjie Xu; Matt Mallory; Yaoyao Li; Laila El-Hifnawi; Leila Ahmadinia; Ben Ouellette; Lauren Kruse; Lydia Ng; Hui Gong; Qingming Luo; Michael Kunst; Cindy T. J. van Velthoven; Zizhen Yao; Staci A. Sorensen; Hongkui Zeng

Technical and biological sources of noise confound multiplexed enhancer AAV screening 技术来源和生物来源的噪声干扰多路增强子AAV筛选

Nature Communications

IF15.7

2026-04-28

OAAI

Avery C. Hunker; John K. Mich; Naz Taskin; Amy Torkelson; Trangthanh Cardenas; Jean-Benoît Lalanne; Joseph T. Mahoney; Darren Bertagnolli; Anish Bhaswanth Chakka; Rushil Chakrabarty; Nicholas P. Donadio; Rebecca Ferrer; Molly Gasperini; Jeff Goldy; Junitta Guzman; Kelly Jin; Shannon Khem; Rana Kutsal; Refugio A. Martinez; Dakota Newman; Nick Pena; Christine Rimorin; Dana Rocha; Nadiya V. Shapovalova; Michael Tieu; Natalie Weed; Thomas Zhou; Rebecca Hodge; Shenqin Yao; Jay Shendure; Kimberly A. Smith; Ed S. Lein; Bosiljka Tasic; Boaz P. Levi; Jonathan T. Ting

Psilocybin triggers an activity-dependent rewiring of large-scale cortical networks Psilocybin触发大规模皮质网络的活动依赖性重新布线

Cell

IF42.5

2025-12-05

PREAI

Quan Jiang; Ling-Xiao Shao; Shenqin Yao; Neil K. Savalia; Amelia D. Gilbert; Pasha A. Davoudian; Jack D. Nothnagel; Guilian Tian; Tin Shing Hung; Hei Ming Lai; Kevin T. Beier; Hongkui Zeng; Alex C. Kwan

Data-driven fine-grained region discovery in the mouse brain with transformers 基于Transformer的面向小鼠脑部数据驱动的精细化区域发现

Nature Communications

IF15.7

2025-10-07

OAAI

Alex J. Lee; Alma Dubuc; Michael Kunst; Shenqin Yao; Nicholas Lusk; Lydia Ng; Hongkui Zeng; Bosiljka Tasic; Reza Abbasi-Asl

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

ELIFE

IF0

2024-02-06

OAAI

Zhang, Aixin; Jin, Lei; Yao, Shenqin; Matsuyama, Makoto; van Velthoven, Cindy T. J.; Sullivan, Heather Anne; Sun, Na; Kellis, Manolis; Tasic, Bosiljka; Wickersham, Ian; Chen, Xiaoyin

Linking connectome with transcriptome using a self-inactivating rabies virus

NATURE METHODS

IF32.1

2023-03-02

PREAI

Yao, Shenqin; Levi, Boaz P.

Regional and cell-type-specific afferent and efferent projections of the mouse claustrum

CELL REPORTS

IF6.9

2023-02-01

OAAI

Wang, Quanxin; Wang, Yun; Kuo, Hsien-Chi; Xie, Peng; Kuang, Xiuli; Hirokawa, Karla E.; Naeemi, Maitham; Yao, Shenqin; Mallory, Matt; Ouellette, Ben; Lesnar, Phil; Li, Yaoyao; Ye, Min; Chen, Chao; Xiong, Wei; Ahmadinia, Leila; El-Hifnawi, Laila; Cetin, Ali; Sorensen, Staci A.; Harris, Julie A.; Zeng, Hongkui; Koch, Christof

Graphical abstract

NEURON

IF15

2022-12-01

OAAI

Yao, Yuanyuan; Barger, Zeke; Doost, Mohammad Saffari; Tso, Chak Foon; Darmohray, Dana; Silverman, Daniel; Liu, Danqian; Ma, Chenyan; Cetin, Ali; Yao, Shenqin; Zeng, Hongkui; Dan, Yang

Enhancer viruses for combinatorial cell-subclass-specific labeling

NEURON

IF15

2021-05-01

OAAI

Graybuck, Lucas T.; Daigle, Tanya L.; Sedeno-Cortes, Adriana E.; Walker, Miranda; Kalmbach, Brian; Lenz, Garreck H.; Morin, Elyse; Thuc Nghi Nguyen; Garren, Emma; Bendrick, Jacqueline L.; Kim, Tae Kyung; Zhou, Thomas; Mortrud, Marty; Yao, Shenqin; Siverts, La' Akea; Larsen, Rachael; Gore, Bryan B.; Szelenyi, Eric R.; Trader, Cameron; Balaram, Pooja; van Velthoven, Cindy T. J.; Chiang, Megan; Mich, John K.; Dee, Nick; Goldy, Jeff; Cetin, Ali H.; Smith, Kimberly; Way, Sharon W.; Esposito, Luke; Yao, Zizhen; Gradinaru, Viviana; Sunkin, Susan M.; Lein, Ed; Levi, Boaz P.; Ting, Jonathan T.; Zeng, Hongkui; Tasic, Bosiljka

Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

CELL REPORTS

IF6.9

2021-03-01

OAAI

Mich, John K.; Graybuck, Lucas T.; Hess, Erik E.; Mahoney, Joseph T.; Kojima, Yoshiko; Ding, Yi; Somasundaram, Saroja; Miller, Jeremy A.; Kalmbach, Brian E.; Radaelli, Cristina; Gore, Bryan B.; Weed, Natalie; Omstead, Victoria; Bishaw, Yemeserach; Shapovalova, Nadiya, V; Martinez, Refugio A.; Fong, Olivia; Yao, Shenqin; Mortrud, Marty; Chong, Peter; Loftus, Luke; Bertagnolli, Darren; Goldy, Jeff; Casper, Tamara; Dee, Nick; Opitz-Araya, Ximena; Cetin, Ali; Smith, Kimberly A.; Gwinn, Ryder P.; Cobbs, Charles; Ko, Andrew L.; Ojemann, Jeffrey G.; Keene, C. Dirk; Silbergeld, Daniel L.; Sunkin, Susan M.; Gradinaru, Viviana; Horwitz, Gregory D.; Zeng, Hongkui; Tasic, Bosiljka; Lein, Ed S.; Ting, Jonathan T.; Levi, Boaz P.

RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations

NATURE METHODS

IF32.1

2020-03-23

OAAI

Yao, Shenqin; Yuan, Peng; Ouellette, Ben; Zhou, Thomas; Mortrud, Marty; Balaram, Pooja; Chatterjee, Soumya; Wang, Yun; Daigle, Tanya L.; Tasic, Bosiljka; Kuang, Xiuli; Gong, Hui; Luo, Qingming; Zeng, Shaoqun; Curtright, Andrew; Dhaka, Ajay; Kahan, Anat; Gradinaru, Viviana; Chrapkiewicz, Radoslaw; Schnitzer, Mark; Zeng, Hongkui; Cetin, Ali

Connectional architecture of a mouse hypothalamic circuit node controlling social behavior 控制社交行为的小鼠下丘脑回路节点的连接体系结构

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-03-21

102

OAAI

Lo, Liching; Yao, Shenqin; Kim, Dong-Wook; Cetin, Ali; Harris, Julie; Zeng, Hongkui; Anderson, David J.; Weissbourd, Brandon

Oxytocin signaling in the medial amygdala is required for sex discrimination of social cues

ELIFE

IF0

2017-12-12

OAAI