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TAPS LIQUID BIOPSY: AN ULTRASENSITIVE, INTEGRATED GENOMIC-EPIGENETIC CSF ASSAY FOR CNS TUMORS TAPS液体活检：一种用于中枢神经系统（CNS）肿瘤的超敏感、整合基因组-表观基因组学脑脊液（CSF）检测方法 Fang, Camila S.; Freitag, Eloise; Oviedo, Alexa; Schroff, Chanel; Hadi, Kevin; Deshpande, Aditya; Rafailov, Johnathan; Weiss, Hannah; Dhasmana, Neha; Zacharoulis, Stergios; Orringer, Daniel; Yang, Yiying; Wrzeszczynski, Kazimierz O.; Imielinski, Marcin; Snuderl, Matija; Miller, Alexandra M. 分享 收藏
ULTRASENSITIVE INTEGRATED GENOMIC-EPIGENETIC CTDNA CNS TUMOR ASSAY USING TET-ASSISTED PYRIDINE BORANE SEQUENCING (TAPS) 超灵敏集成的基因组-表观基因组cfDNA CNS肿瘤检测试剂盒，使用四嗪辅助吡啶硼烷测序（TAPS） Snuderl, M.; Fang, C. S.; Freitag, E.; Oviedo, A.; Schroff, C.; Hadi, K.; Deshpande, A.; Rafailov, J.; Weiss, H.; Dhasmana, N.; Orringer, D.; Wrzeszczynski, K.; Imielinski, M.; Miller, A. M. 分享 收藏
Three-dimensional genome landscape of primary human cancers 原发性人类癌症的三维基因组景观 Yost, Kathryn E.; Zhao, Yanding; Hung, King L.; Zhu, Kaiyuan; Xu, Duo; Corces, M. Ryan; Shams, Shadi; Louie, Bryan H.; Sarmashghi, Shahab; Sundaram, Laksshman; Luebeck, Jens; Clarke, Stanley; Doane, Ashley S.; Granja, Jeffrey M.; Choudhry, Hani; Imielinski, Marcin; Cherniack, Andrew D.; Khurana, Ekta; Bafna, Vineet; Felau, Ina; Zenklusen, Jean C.; Laird, Peter W.; Curtis, Christina; Greenleaf, William J.; Chang, Howard Y. 分享 收藏
A complex phylogeny of lineage plasticity in metastatic castration resistant prostate cancer 转移性去势抵抗性前列腺癌中谱系可塑性的复杂谱系 Nauseef, Jones T.; Chu, Timothy R.; Hooper, William F.; Alonso, Alicia; Oku, Ali; Geiger, Heather; Goldstein, Zoe R.; Shah, Minita; Sigouros, Michael; Manohar, Jyothi; Steinsnyder, Zoe; Winterkorn, Lara; Robinson, Brian D.; Sboner, Andrea; Beltran, Himisha; Elemento, Olivier; Hajirasouliha, Iman; Imielinski, Marcin; Nanus, David M.; Tagawa, Scott T.; Robine, Nicolas; Mosquera, Juan Miguel 分享 收藏
Ultrasensitive plasma-based monitoring of tumor burden using machine-learning-guided signal enrichment 使用机器学习引导的信号富集技术对基于血浆的肿瘤负荷进行超灵敏监测 Widman, Adam J.; Shah, Minita; Frydendahl, Amanda; Halmos, Daniel; Khamnei, Cole C.; Ogaard, Nadia; Rajagopalan, Srinivas; Arora, Anushri; Deshpande, Aditya; Hooper, William F.; Quentin, Jean; Bass, Jake; Zhang, Mingxuan; Langanay, Theophile; Andersen, Laura; Steinsnyder, Zoe; Liao, Will; Rasmussen, Mads Heilskov; Henriksen, Tenna Vesterman; Jensen, Sarah ostrup; Nors, Jesper; Therkildsen, Christina; Sotelo, Jesus; Brand, Ryan; Schiffman, Joshua S.; Shah, Ronak H.; Cheng, Alexandre Pellan; Maher, Colleen; Spain, Lavinia; Krause, Kate; Frederick, Dennie T.; den Brok, Wendie; Lohrisch, Caroline; Shenkier, Tamara; Simmons, Christine; Villa, Diego; Mungall, Andrew J.; Moore, Richard; Zaikova, Elena; Cerda, Viviana; Kong, Esther; Lai, Daniel; Malbari, Murtaza S.; Marton, Melissa; Manaa, Dina; Winterkorn, Lara; Gelmon, Karen; Callahan, Margaret K.; Boland, Genevieve; Potenski, Catherine; Wolchok, Jedd D.; Saxena, Ashish; Turajlic, Samra; Imielinski, Marcin; Berger, Michael F.; Aparicio, Sam; Altorki, Nasser K.; Postow, Michael A.; Robine, Nicolas; Andersen, Claus Lindbjerg; Landau, Dan A. 分享 收藏
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Most large structural variants in cancer genomes can be detected without long reads Choo, Zi-Ning; Behr, Julie M.; Deshpande, Aditya; Hadi, Kevin; Yao, Xiaotong; Tian, Huasong; Takai, Kaori; Zakusilo, George; Rosiene, Joel; Paula, Arnaud Da Cruz; Weigelt, Britta; Setton, Jeremy; Riaz, Nadeem; Powell, Simon N.; Busam, Klaus; Shoushtari, Alexander N.; Ariyan, Charlotte; Reis-Filho, Jorge; de Lange, Titia; Imielinski, Marcin 分享 收藏
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Molecular Evolution of Classic Hodgkin Lymphoma Revealed Through Whole-Genome Sequencing of Hodgkin and Reed Cells Maura, Francesco; Ziccheddu, Bachisio; Xiang, Jenny Z.; Bhinder, Bhavneet; Rosiene, Joel; Abascal, Federico; Maclachlan, Kylee H.; Eng, Kenneth Wha; Uppal, Manik; He, Feng; Zhang, Wei; Gao, Qi; Yellapantula, Venkata D.; Trujillo-Alonso, Vicenta; Park, Sunita I.; Oberley, Matthew J.; Ruckdeschel, Elizabeth; Lim, Megan S.; Wertheim, Gerald B.; Barth, Matthew J.; Horton, Terzah M.; Derkach, Andriy; Kovach, Alexandra E.; Forlenza, Christopher J.; Zhang, Yanming; Landgren, Ola; Moskowitz, Craig H.; Cesarman, Ethel; Imielinski, Marcin; Elemento, Olivier; Roshal, Mikhail; Giulino-Roth, Lisa 分享 收藏
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Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing Deshpande, Aditya S.; Ulahannan, Netha; Pendleton, Matthew; Dai, Xiaoguang; Ly, Lynn; Behr, Julie M.; Schwenk, Stefan; Liao, Will; Augello, Michael A.; Tyer, Carly; Rughani, Priyesh; Kudman, Sarah; Tian, Huasong; Otis, Hannah G.; Adney, Emily; Wilkes, David; Mosquera, Juan Miguel; Barbieri, Christopher E.; Melnick, Ari; Stoddart, David; Turner, Daniel J.; Juul, Sissel; Harrington, Eoghan; Imielinski, Marcin 分享 收藏
Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression Paulson, Thomas G.; Galipeau, Patricia C.; Oman, Kenji M.; Sanchez, Carissa A.; Kuhner, Mary K.; Smith, Lucian P.; Hadi, Kevin; Shah, Minita; Arora, Kanika; Shelton, Jennifer; Johnson, Molly; Corvelo, Andre; Maley, Carlo C.; Yao, Xiaotong; Sanghvi, Rashesh; Venturini, Elisa; Emde, Anne-Katrin; Hubert, Benjamin; Imielinski, Marcin; Robine, Nicolas; Reid, Brian J.; Li, Xiaohong 分享 收藏
SETD2 Haploinsufficiency Enhances Germinal Center-Associated AICDA Somatic Hypermutation to Drive B- cell Lymphomagenesis Leung, Wilfred; Teater, Matt; Durmaz, Ceyda; Meydan, Cem; Chivu, Alexandra G.; Chadburn, Amy; Rice, Edward J.; Muley, Ashlesha; Camarillo, Jeannie M.; Arivalagan, Jaison; Li, Ziyi; Flowers, Christopher R.; Kelleher, Neil L.; Danko, Charles G.; Imielinski, Marcin; Dave, Sandeep S.; Armstrong, Scott A.; Mason, Christopher E.; Melnick, Ari M. 分享 收藏
Oncogenic RIT1 mutations in lung adenocarcinoma (vol 33, pg 4418, 2014) Berger, A. H.; Imielinski, M.; Duke, F.; Wala, J.; Kaplan, N.; Shi, G. -X; Andres, D. A.; Meyerson, M. 分享 收藏
Pathognomonic long molecule footprints of backup repair pathways in homologous recombination deficient cancers Setton, Jeremy; Hadi, Kevin; Tian, Huasong; Paula, Arnaud Da Cruz; Rosiene, Joel; Choo, Zi-Ning; Behr, Julie; Yao, Xiaotong; Elemento, Olivier; Weigelt, Britta; Riaz, Nadeem; Reis-Filho, Jorge S.; Imielinski, Marcin; Powell, Simon N. 分享 收藏
System-wide transcriptome damage and tissue identity loss in COVID-19 patients Park, Jiwoon; Foox, Jonathan; Hether, Tyler; Danko, David C.; Warren, Sarah; Kim, Youngmi; Reeves, Jason; Butler, Daniel J.; Mozsary, Christopher; Rosiene, Joel; Shaiber, Alon; Afshin, Evan E.; MacKay, Matthew; Rendeiro, Andre F.; Bram, Yaron; Chandar, Vasuretha; Geiger, Heather; Craney, Arryn; Velu, Priya; Melnick, Ari M.; Hajirasouliha, Iman; Beheshti, Afshin; Taylor, Deanne; Saravia-Butler, Amanda; Singh, Urminder; Wurtele, Eve Syrkin; Schisler, Jonathan; Fennessey, Samantha; Corvelo, Andre; Zody, Michael C.; Germer, Soren; Salvatore, Steven; Levy, Shawn; Wu, Shixiu; Tatonetti, Nicholas P.; Shapira, Sagi; Salvatore, Mirella; Westblade, Lars F.; Cushing, Melissa; Rennert, Hanna; Kriegel, Alison J.; Elemento, Olivier; Imielinski, Marcin; Rice, Charles M.; Borczuk, Alain C.; Meydan, Cem; Schwartz, Robert E.; Mason, Christopher E. 分享 收藏
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