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P

Padmini Ramachandran

metagenomics diversity and ecology branch (mdeb)

H指数:22

被引数:1,934

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Targeted metagenomics enables species-level detection of arthropod contaminants in food

靶向元基因组学实现了在食品中物种水平的节肢动物污染物检测

IF6.3

2026-04-170

OAAI

Population structure analysis of Salmonella serovar Muenchen to redefine geno-serotyping using genome indexing approaches

沙门氏菌血清型慕尼黑种群结构分析，以利用基因组索引方法重新定义基因血清分型

Frontiers in Microbiology

IF4.5

2026-02-100

OAAI

Bioinformatics combined with machine learning unravels differences among environmental, seafood, and clinical isolates of Vibrio parahaemolyticus

生物信息学与机器学习相结合，解开了环境，海鲜和临床分离的副溶血性弧菌之间的差异

FRONTIERS IN MICROBIOLOGY

IF4.5

2025-03-190

OAAI

SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network

IF4.6

2024-06-181

OAAI

Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing

推进宏基因组组装的基于基因组的病原体鉴定: 解开牛津纳米孔测序中长读组装算法的力量

MICROBIOLOGY SPECTRUM

IF3.8

2024-06-047

OAAI

Genome-based machine learning for predicting antimicrobial resistance in Salmonella isolated from chicken

基于基因组的机器学习预测鸡沙门氏菌耐药性

LWT-FOOD SCIENCE AND TECHNOLOGY

IF6.6

2024-05-010

OAAI

Evaluation of universal preenrichment broth and comparison of rapid molecular methods for the detection of Salmonella from spent sprout irrigation water (SSIW)

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

IF5.2

2024-02-011

OAAI

Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities

MICROBIOLOGY SPECTRUM

IF3.8

2023-12-126

OAAI

Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water

用于食品安全的精确宏基因组测序: 富集农业用水中产生志贺毒素的大肠杆菌的杂交组装

FRONTIERS IN MICROBIOLOGY

IF4.5

2023-08-313

OAAI

bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting

FRONTIERS IN MICROBIOLOGY

IF4.5

2023-08-022

OAAI

Conventional tobacco products harbor unique and heterogenous microbiomes

ENVIRONMENTAL RESEARCH

IF7.7

2023-03-012

OAAI

Variations in Bacterial Communities and Antibiotic Resistance Genes Across Diverse Recycled and Surface Water Irrigation Sources in the Mid-Atlantic and Southwest United States: A CONSERVE Two-Year Field Study

ENVIRONMENTAL SCIENCE & TECHNOLOGY

IF11.3

2022-10-0410

OAAI

Malayil, Leena; Ramachandran, Padmini; Chattopadhyay, Suhana; Allard, Sarah M.; Bui, Anthony; Butron, Jicell; Callahan, Mary Theresa; Craddock, Hillary A.; Murray, Rianna; East, Cheryl; Sharma, Manan; Kniel, Kalmia; Micallef, Shirley; Hashem, Fawzy; Gerba, Charles P.; Ravishankar, Sadhana; Parveen, Salina; May, Eric; Handy, Eric; Kulkarni, Prachi; Anderson-Coughlin, Brienna; Craighead, Shani; Gartley, Samantha; Vanore, Adam; Duncan, Rico; Foust, Derek; Betancourt, Walter; Zhu, Libin; Mongodin, Emmanuel F.; Sapkota, Amir; Pop, Mihai; Haymaker, Joseph; Sapkota, Amy R.

Investigating the Distribution of Strains of Erwinia amylovora and Streptomycin Resistance in Apple Orchards in New York Using Clustered Regularly Interspaced Short Palindromic Repeat Profiles: A 6-Year Follow-Up

IF4.4

2021-11-0111

OA

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

IF3.7

2021-05-2613

OAAI

Metataxonomic Profiling of Native and Starter Microbiota During Ripening of Gouda Cheese Made With Listeria monocytogenes-Contaminated Unpasteurized Milk

FRONTIERS IN MICROBIOLOGY

IF4.5

2021-03-1210

OAAI

Taxonomic and Functional Shifts in the Sprout Spent Irrigation Water Microbiome in Response to Salmonella Contamination of Alfalfa Seeds

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2021-01-155

OAAI

Correlation of Salmonella enterica and Listeria monocytogenes in Irrigation Water to Environmental Factors, Fecal Indicators, and Bacterial Communities

FRONTIERS IN MICROBIOLOGY

IF4.5

2021-01-0826

OAAI

Endophytic Bacterial Communities in Apple Leaves Are Minimally Impacted by Streptomycin Use for Fire Blight Management

PHYTOBIOMES JOURNAL

IF2.6

2021-01-011

OA

Metabolically-active bacteria in reclaimed water and ponds revealed using bromodeoxyuridine DNA labeling coupled with 16S rRNA and shotgun sequencing

IF12.4

2020-10-0113

OAAI

Using full chloroplast genomes of 'red' and 'yellow' Bixa orellana (achiote) for kmer based identification and phylogenetic inference

IF3.7

2020-08-062

OAAI