Eoin Fahy - Publications, H-index & Citations

Eoin Fahy

University of California San Diego

46H指数

117论文数

1.8W被引数

收录论文 44

发表时间

Structure-centric searching enables global mapping of the public metabolome 以结构为中心的搜索实现了公共代谢组的全局映射

Nature Biotechnology

IF41.7

2026-04-15

OAAI

Yasin El Abiead; Jeong In Seo; Vincent Charron-Lamoureux; Michael Strobel; Wilhan Donizete Gonçalves Nunes; Haoqi Nina Zhao; Kine Eide Kvitne; Simone Zuffa; Helena Mannochio-Russo; Harsha Gouda; Cristina Bez; Abubaker Patan; Shipei Xing; Jasmine Zemlin; Ipsita Mohany; Julius Agongo; Andres Mauricio Caraballo Rodriguez; Lindsey A. Burnett; Victoria Deleray; Abzer K. Pakkir Shah; Jarmo-Charles Kalinski; Daniel Petras; Nikiforos Alygizakis; Jeremy Carver; Ozgur Yurekten; Thomas Payne; Eoin Fahy; Shankar Subramaniam; Juan Antonio Vizcaíno; Mingxun Wang; Pieter C. Dorrestein

Author Correction: A universal language for finding mass spectrometry data patterns 作者更正：一种用于发现质谱数据模式的通用语言

Nature Methods

IF32.1

2025-08-08

OAAI

Tito Damiani; Alan K. Jarmusch; Allegra T. Aron; Daniel Petras; Vanessa V. Phelan; Haoqi Nina Zhao; Wout Bittremieux; Deepa D. Acharya; Mohammed M. A. Ahmed; Anelize Bauermeister; Matthew J. Bertin; Paul D. Boudreau; Ricardo M. Borges; Benjamin P. Bowen; Christopher J. Brown; Fernanda O. Chagas; Kenneth D. Clevenger; Mario S. P. Correia; William J. Crandall; Max Crüsemann; Eoin Fahy; Oliver Fiehn; Neha Garg; William H. Gerwick; Jeffrey R. Gilbert; Daniel Globisch; Paulo Wender P. Gomes; Steffen Heuckeroth; C. Andrew James; Scott A. Jarmusch; Sarvar A. Kakhkhorov; Kyo Bin Kang; Nikolas Kessler; Roland D. Kersten; Hyunwoo Kim; Riley D. Kirk; Oliver Kohlbacher; Eftychia E. Kontou; Ken Liu; Itzel Lizama-Chamu; Gordon T. Luu; Tal Luzzatto Knaan; Helena Mannochio-Russo; Michael T. Marty; Yuki Matsuzawa; Andrew C. McAvoy; Laura-Isobel McCall; Osama G. Mohamed; Omri Nahor; Heiko Neuweger; Timo H. J. Niedermeyer; Kozo Nishida; Trent R. Northen; Kirsten E. Overdahl; Johannes Rainer; Raphael Reher; Elys Rodriguez; Timo T. Sachsenberg; Laura M. Sanchez; Robin Schmid; Cole Stevens; Shankar Subramaniam; Zhenyu Tian; Ashootosh Tripathi; Hiroshi Tsugawa; Justin J. J. van der Hooft; Andrea Vicini; Axel Walter; Tilmann Weber; Quanbo Xiong; Tao Xu; Tomáš Pluskal; Pieter C. Dorrestein; Mingxun Wang

Playbook workflow builder: Interactive construction of bioinformatics workflows 操作手册工作流构建器：生物信息学工作流的交互式构建

plos biology

IF3.6

2025-04-03

OAAI

Clarke, Daniel J. B.; Evangelista, John Erol; Xie, Zhuorui; Marino, Giacomo B.; Byrd, Anna I.; Maurya, Mano R.; Srinivasan, Sumana; Yu, Keyang; Petrosyan, Varduhi; Roth, Matthew E.; Milinkov, Miroslav; King, Charles Hadley; Vora, Jeet Kiran; Keeney, Jonathon; Nemarich, Christopher; Khan, William; Lachmann, Alexander; Ahmed, Nasheath; Agris, Alexandra; Pan, Juncheng; Ramachandran, Srinivasan; Fahy, Eoin; Esquivel, Emmanuel; Mihajlovic, Aleksandar; Jevtic, Bosko; Milinovic, Vuk; Kim, Sean; McNeely, Patrick; Wang, Tianyi; Wenger, Eric; Brown, Miguel A.; Sickler, Alexander; Zhu, Yuankun; Jenkins, Sherry L.; Blood, Philip D.; Taylor, Deanne M.; Resnick, Adam C.; Mazumder, Raja; Milosavljevic, Aleksandar; Subramaniam, Shankar; Ma'ayan, Avi

metLinkR: Facilitating Metaanalysis of Human Metabolomics Data through Automated Linking of Metabolite Identifiers metLinkR: 通过代谢物标识符的自动链接促进人类代谢组学数据的荟萃分析

JOURNAL OF PROTEOME RESEARCH

IF3.6

2025-04-01

OAAI

Patt, Andrew; Pang, Iris; Lee, Fred; Gohel, Chiraag; Fahy, Eoin; Stevens, Vicki; Ruggieri, David; Moore, Steven C.; Mathe, Ewy A.

MetGENE: gene-centric metabolomics information retrieval tool

GIGASCIENCE

IF3.9

2023-11-20

OAAI

Srinivasan, Sumana; Maurya, Mano R.; Ramachandran, Srinivasan; Fahy, Eoin; Subramaniam, Shankar

LIPID MAPS: update to databases and tools for the lipidomics community 脂质地图: 脂质组学社区数据库和工具的更新

NUCLEIC ACIDS RESEARCH

IF13.1

2023-10-19

OAAI

Conroy, Matthew J.; Andrews, Robert M.; Andrews, Simon; Cockayne, Lauren; Dennis, Edward A.; Fahy, Eoin; Gaud, Caroline; Griffiths, William J.; Jukes, Geoff; Kolchin, Maksim; Mendivelso, Karla; Lopez-Clavijo, Andrea F.; Ready, Caroline; Subramaniam, Shankar; O'Donnell, Valerie B.

Guiding the choice of informatics software and tools for lipidomics research applications 指导脂质组学研究应用的信息学软件和工具的选择

NATURE METHODS

IF32.1

2022-12-21

OAAI

Ni, Zhixu; Wolk, Michele; Jukes, Geoff; Espinosa, Karla Mendivelso; Ahrends, Robert; Aimo, Lucila; Alvarez-Jarreta, Jorge; Andrews, Simon; Andrews, Robert; Bridge, Alan; Clair, Geremy C.; Conroy, Matthew J.; Fahy, Eoin; Gaud, Caroline; Goracci, Laura; Hartler, Juergen; Hoffmann, Nils; Kopczyinki, Dominik; Korf, Ansgar; Lopez-Clavijo, Andrea F.; Malik, Adnan; Ackerman, Jacobo Miranda; Molenaar, Martijn R.; O'Donovan, Claire; Pluskal, Tomas; Shevchenko, Andrej; Slenter, Denise; Siuzdak, Gary; Kutmon, Martina; Tsugawa, Hiroshi; Willighagen, Egon L.; Xia, Jianguo; O'Donnell, Valerie B.; Fedorova, Maria

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

NATURE METHODS

IF32.1

2021-12-03

OAAI

Petras, Daniel; Phelan, Vanessa V.; Acharya, Deepa; Allen, Andrew E.; Aron, Allegra T.; Bandeira, Nuno; Bowen, Benjamin P.; Belle-Oudry, Deirdre; Boecker, Simon; Cummings, Dale A., Jr.; Deutsch, Jessica M.; Fahy, Eoin; Garg, Neha; Gregor, Rachel; Handelsman, Jo; Navarro-Hoyos, Mirtha; Jarmusch, Alan K.; Jarmusch, Scott A.; Louie, Katherine; Maloney, Katherine N.; Marty, Michael T.; Meijler, Michael M.; Mizrahi, Itzhak; Neve, Rachel L.; Northen, Trent R.; Molina-Santiago, Carlos; Panitchpakdi, Morgan; Pullman, Benjamin; Puri, Aaron W.; Schmid, Robin; Subramaniam, Shankar; Thukral, Monica; Vasquez-Castro, Felipe; Dorrestein, Pieter C.; Wang, Mingxun

ADAP-KDB: A Spectral Knowledgebase for Tracking and Prioritizing Unknown GC-MS Spectra in the NIH's Metabolomics Data Repository

ANALYTICAL CHEMISTRY

IF6.7

2021-08-29

PREAI

Smirnov, Aleksandr; Liao, Yunfei; Fahy, Eoin; Subramaniam, Shankar; Du, Xiuxia

Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures MS衍生脂质结构的脂质图分类，命名法和速记表示法的更新

JOURNAL OF LIPID RESEARCH

IF4.1

2020-12-01

492

OAAI

Liebisch, Gerhard; Fahy, Eoin; Aoki, Junken; Dennis, Edward A.; Durand, Thierry; Ejsing, Christer S.; Fedorova, Maria; Feussner, Ivo; Griffiths, William J.; Koefeler, Harald; Merrill, Alfred H., Jr.; Murphy, Robert C.; O'Donnell, Valerie B.; Oskolkova, Olga; Subramaniam, Shankar; Wakelam, Michael J. O.; Spener, Friedrich

RefMet: a reference nomenclature for metabolomics

NATURE METHODS

IF32.1

2020-11-16

PREAI

Fahy, Eoin; Subramaniam, Shankar

The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies 代谢组学研究联盟 (彗星): 47项前瞻性队列研究中的代谢组学

AMERICAN JOURNAL OF EPIDEMIOLOGY

IF4.8

2019-02-19

OAAI

Yu, Bing; Zanetti, Krista A.; Temprosa, Marinella; Albanes, Demetrius; Appel, Nathan; Barrera, Clara Barrios; Ben-Shlomo, Yoav; Boerwinkle, Eric; Casas, Juan P.; Clish, Clary; Dale, Caroline; Dehghan, Abbas; Derkach, Andriy; Eliassen, A. Heather; Elliott, Paul; Fahy, Eoin; Gieger, Christian; Gunter, Marc J.; Harada, Sei; Harris, Tamara; Herr, Deron R.; Herrington, David; Hirschhorn, Joel N.; Hoover, Elise; Hsing, Ann W.; Johansson, Mattias; Kelly, Rachel S.; Khoo, Chin Meng; Kivimaki, Mika; Kristal, Bruce S.; Langenberg, Claudia; Lasky-Su, Jessica; Lawlor, Deborah A.; Lotta, Luca A.; Mangino, Massimo; Le Marchand, Loic; Mathe, Ewy; Matthews, Charles E.; Menni, Cristina; Mucci, Lorelei A.; Murphy, Rachel; Oresic, Matej; Orwoll, Eric; Ose, Jennifer; Pereira, Alexandre C.; Playdon, Mary C.; Poston, Lucilla; Price, Jackie; Qi, Qibin; Rexrode, Kathryn; Risch, Adam; Sampson, Joshua; Seow, Wei Jie; Sesso, Howard D.; Shah, Svati H.; Shu, Xiao-Ou; Smith, Gordon C. S.; Sovio, Ulla; Stevens, Victoria L.; Stolzenberg-Solomon, Rachael; Takebayashi, Toru; Tillin, Therese; Travis, Ruth; Tzoulaki, Ioanna; Ulrich, Cornelia M.; Vasan, Ramachandran S.; Verma, Mukesh; Wang, Ying; Wareham, Nick J.; Wong, Andrew; Younes, Naji; Zhao, Hua; Zheng, Wei; Moore, Steven C.

Discovering and linking public omics data sets using the Omics Discovery Index

NATURE BIOTECHNOLOGY

IF41.7

2017-05-09

134

OAAI

Perez-Riverol, Yasset; Bai, Mingze; Leprevost, Felipe da Veiga; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J.; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W.; Campbell, David S.; Beavis, Ronald C.; Salek, Reza M.; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jimenez, Rafael C.; Nesvizhskii, Alexey I.; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaino, Juan A.; Ping, Peipei; Hermjakob, Henning

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy ClassyFire: 具有全面，可计算的分类法的自动化学分类

JOURNAL OF CHEMINFORMATICS

IF5.7

2016-11-04

518

OAAI

Feunang, Yannick Djoumbou; Eisner, Roman; Knox, Craig; Chepelev, Leonid; Hastings, Janna; Owen, Gareth; Fahy, Eoin; Steinbeck, Christoph; Subramanian, Shankar; Bolton, Evan; Greiner, Russell; Wishart, David S.

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools 代谢组学工作台: 代谢组学数据和元数据、代谢物标准、方案、教程和培训以及分析工具的国际存储库

NUCLEIC ACIDS RESEARCH

IF13.1

2015-10-13

567

OAAI

Sud, Manish; Fahy, Eoin; Cotter, Dawn; Azam, Kenan; Vadivelu, Ilango; Burant, Charles; Edison, Arthur; Fiehn, Oliver; Higashi, Richard; Nair, K. Sreekumaran; Sumner, Susan; Subramaniam, Shankar

Biomarkers of NAFLD progression: a lipidomics approach to an epidemic

JOURNAL OF LIPID RESEARCH

IF4.1

2015-03-01

296

OAAI

Gorden, D. Lee; Myers, David S.; Ivanova, Pavlina T.; Fahy, Eoin; Maurya, Mano R.; Gupta, Shakti; Min, Jun; Spann, Nathanael J.; McDonald, Jeffrey G.; Kelly, Samuel L.; Duan, Jingjing; Sullards, M. Cameron; Leiker, Thomas J.; Barkley, Robert M.; Quehenberger, Oswald; Armando, Aaron M.; Milne, Stephen B.; Mathews, Thomas P.; Armstrong, Michelle D.; Li, Chijun; Melvin, Willie V.; Clements, Ronald H.; Washington, M. Kay; Mendonsa, Alisha M.; Witztum, Joseph L.; Guan, Ziqiang; Glass, Christopher K.; Murphy, Robert C.; Dennis, Edward A.; Merrill, Alfred H., Jr.; Russell, David W.; Subramaniam, Shankar; Brown, H. Alex

Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages (vol 54, pg 2525, 2013)

JOURNAL OF LIPID RESEARCH

IF4.1

2014-07-01

PREAI

Maurya, Mano R.; Gupta, Shakti; Li, Xiang; Fahy, Eoin; Dinasarapu, Ashok R.; Sud, Manish; Brown, H. Alex; Glass, Christopher K.; Murphy, Robert C.; Russell, David W.; Dennis, Edward A.; Subramaniam, Shankar

25-Hydroxycholesterol Activates the Integrated Stress Response to Reprogram Transcription and Translation in Macrophages 25-羟基胆固醇激活整合的应激反应，以重编程巨噬细胞中的转录和翻译

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2013-12-01

OAAI

Shibata, Norihito; Carlin, Aaron F.; Spann, Nathanael J.; Saijo, Kaoru; Morello, Christopher S.; McDonald, Jeffrey G.; Romanoski, Casey E.; Maurya, Mano R.; Kaikkonen, Minna U.; Lam, Michael T.; Crotti, Andrea; Reichart, Donna; Fox, Jesse N.; Quehenberger, Oswald; Raetz, Christian R. H.; Sullards, M. Cameron; Murphy, Robert C.; Merrill, Alfred H., Jr.; Brown, H. Alex; Dennis, Edward A.; Fahy, Eoin; Subramaniam, Shankar; Cavener, Douglas R.; Spector, Deborah H.; Russell, David W.; Glass, Christopher K.

Lipidomics Technologies at the End of the First Decade and the Beginning of the Next

ADVANCES IN NUTRITION

IF9.2

2013-09-01

OAAI

Merrill, Alfred H.; Dennis, Edward A.; McDonald, Jeffrey G.; Fahy, Eoin

Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages 跨RAW264.7和巯基乙酸盐引发的巨噬细胞的炎症和脂质代谢网络分析

JOURNAL OF LIPID RESEARCH

IF4.1

2013-09-01

OAAI

研究方向