Søren Michael Karst

Statens Serum Institut

33H指数

103论文数

6.9K被引数

收录论文 26

发表时间

High throughput method for monitoring SARS-CoV-2 variants in wastewater by Nanopore sequencing 通过Nanopore测序技术对废水中的SARS-CoV-2变异株进行高通量监测的方法

Heliyon

IF3.6

2025-08-20

OAAI

Lasse Dam Rasmussen; Søren Michael Karst; Stine Raith Richter; Sofie Elisabeth Midgley; Christian Berrig; Amanda Gammelby Qvesel; Kristina Træholt Franck

Application of rapid Nanopore metagenomic cell-free DNA sequencing to diagnose bloodstream infections: a prospective observational study

MICROBIOLOGY SPECTRUM

IF3.8

2025-03-01

OAAI

Nielsen, Morten Eneberg; Sogaard, Kirstine Kobberoe; Karst, Soren Michael; Krarup, Anne Lund; Albertsen, Mads; Nielsen, Hans Linde

Greengenes2 unifies microbial data in a single reference tree (Jul, 10.1038/s41587-023-01845-1, 2023)Greengenes2将微生物数据统一在一个参考树中 (7月，10.1038/s41587-023-01845-1，2023)

NATURE BIOTECHNOLOGY

IF41.7

2023-10-18

OAAI

McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T.; Nicolaou, Giorgia; Parks, Donovan H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob

Greengenes2 unifies microbial data in a single reference tree Greengenes2将微生物数据统一在一个参考树中

NATURE BIOTECHNOLOGY

IF41.7

2023-07-27

OAAI

McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T. T.; Nicolaou, Giorgia; Parks, Donovan H. H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S. S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob

Rapid and Flexible RT-qPCR Surveillance Platforms To Detect SARS-CoV-2 Mutations

MICROBIOLOGY SPECTRUM

IF3.8

2023-02-14

OAAI

Spiess, Katja; Gunalan, Vithiagaran; Marving, Ellinor; Nielsen, Sofie Holdflod; Jorgensen, Michelle G. P.; Fomsgaard, Anna S.; Nielsen, Line; Alfaro-Nunez, Alonzo; Karst, Soren M.; Mortensen, Shila; Rasmussen, Morten; Lassauniere, Ria; Rosenstierne, Maiken Worsoe; Polacek, Charlotta; Fonager, Jannik; Cohen, Arieh S.; Nielsen, Claus; Fomsgaard, Anders; Jacobs, Jonathan L.; Bereguiain, Miguel Angel Garcia

Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing

NATURE METHODS

IF32.1

2022-07-04

184

OAAI

Sereika, Mantas; Kirkegaard, Rasmus Hansen; Karst, Soren Michael; Michaelsen, Thomas Yssing; Sorensen, Emil Aarre; Wollenberg, Rasmus Dam; Albertsen, Mads

Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing 使用长读测序从活性污泥中回收超过1000个高质量的宏基因组组装基因组，将结构与功能联系起来

NATURE COMMUNICATIONS

IF15.7

2021-03-31

179

OAAI

Singleton, Caitlin M.; Petriglieri, Francesca; Kristensen, Jannie M.; Kirkegaard, Rasmus H.; Michaelsen, Thomas Y.; Andersen, Martin H.; Kondrotaite, Zivile; Karst, Soren M.; Dueholm, Morten S.; Nielsen, Per H.; Albertsen, Mads

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

NATURE METHODS

IF32.1

2021-01-11

212

OAAI

Karst, Soren M.; Ziels, Ryan M.; Kirkegaard, Rasmus H.; Sorensen, Emil A.; McDonald, Daniel; Zhu, Qiyun; Knight, Rob; Albertsen, Mads

Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax)通过高通量全长16s rRNA基因测序和自动分类分配 (AutoTax) 生成具有物种级分辨率的综合生态系统特定参考数据库

MBIO

IF4.7

2020-10-27

OAAI

Dueholm, Morten Simonsen; Andersen, Kasper Skytte; McIlroy, Simon Jon; Kristensen, Jannie Munk; Yashiro, Erika; Karst, Soren Michael; Albertsen, Mads; Nielsen, Per Halkjaer

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerantNitrospira 探索亚硝酸盐氧化的pH上限: 卤代碱的多样性，生态生理学和适应性特征

ISME JOURNAL

IF10

2020-07-24

OAAI

Daebeler, Anne; Kitzinger, Katharina; Koch, Hanna; Herbold, Craig W.; Steinfeder, Michaela; Schwarz, Jasmin; Zechmeister, Thomas; Karst, Soren M.; Albertsen, Mads; Nielsen, Per H.; Wagner, Michael; Daims, Holger

Characterization of the First Candidatus Nitrotoga Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria 第一个念珠菌Nitrotoga分离株的表征揭示了广泛的亚硝酸盐氧化细菌的代谢多功能性和单独进化

MBIO

IF4.7

2018-09-05

111

OAAI

Kitzinger, Katharina; Koch, Hanna; Lucker, Sebastian; Sedlacek, Christopher J.; Herbold, Craig; Schwarz, Jasmin; Daebeler, Anne; Mueller, Anna J.; Lukumbuzya, Michael; Romano, Stefano; Leisch, Nikolaus; Karst, Soren Michael; Kirkegaard, Rasmus; Albertsen, Mads; Nielsen, Per Halkjaer; Wagner, Michael; Daims, Holger

Novel prosthecate bacteria from the candidate phylum Acetothermia 来自候选乙酰热疗门的新型修复细菌

ISME JOURNAL

IF10

2018-06-08

OAAI

Hao, Liping; McIlroy, Simon Jon; Kirkegaard, Rasmus Hansen; Karst, Soren Michael; Fernando, Warnakulasuriya Eustace Yrosh; Aslan, Husnu; Meyer, Rikke Louise; Albertsen, Mads; Nielsen, Per Halkjaer; Dueholm, Morten Simonsen

Genomic and in Situ Analyses Reveal the Micropruina spp. as Abundant Fermentative Glycogen Accumulating Organisms in Enhanced Biological Phosphorus Removal Systems

FRONTIERS IN MICROBIOLOGY

IF4.5

2018-05-23

OAAI

McIlroy, Simon J.; Onetto, Cristobal A.; McIlroy, Bianca; Herbst, Florian-Alexander; Dueholm, Morten S.; Kirkegaard, Rasmus H.; Fernando, Eustace; Karst, Soren M.; Nierychlo, Marta; Kristensen, Jannie M.; Eales, Kathryn L.; Grbin, Paul R.; Wimmer, Reinhard; Nielsen, Per Halkjaer

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias 检索一百万个高质量，全长微生物16s和18s rRNA基因序列，而没有引物偏倚

NATURE BIOTECHNOLOGY

IF41.7

2018-01-01

133

OAAI

Karst, Soren M.; Dueholm, Morten S.; McIlroy, Simon J.; Kirkegaard, Rasmus H.; Nielsen, Per H.; Albertsen, Mads

The impact of immigration on microbial community composition in full-scale anaerobic digesters

SCIENTIFIC REPORTS

IF3.9

2017-08-24

123

OAAI

Kirkegaard, Rasmus H.; McIlroy, Simon J.; Kristensen, Jannie M.; Nierychlo, Marta; Karst, Soren M.; Dueholm, Morten S.; Albertsen, Mads; Nielsen, Per H.

Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge

FRONTIERS IN MICROBIOLOGY

IF4.5

2017-06-23

171

OAAI

Mcllroy, Simon J.; Kirkegaard, Rasmus H.; Dueholm, Morten S.; Fernando, Eustace; Karst, Soren M.; Albertsen, Mads; Nielsen, Per H.

A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems

FRONTIERS IN MICROBIOLOGY

IF4.5

2017-04-27

250

OAAI

Stokholm-Bjerregaard, Mikkel; McIlroy, Simon J.; Nierychlo, Marta; Karst, Soren M.; Albertsen, Mads; Nielsen, Per H.

MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-03-18

127

OAAI

McIlroy, Simon Jon; Kirkegaard, Rasmus Hansen; McIlroy, Bianca; Nierychlo, Marta; Kristensen, Jannie Munk; Karst, Soren Michael; Albertsen, Mads; Nielsen, Per Halkjaer

The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors

MICROBIOLOGYOPEN

IF4.6

2017-03-10

OAAI

Agrawal, Shelesh; Karst, Soren M.; Gilbert, Eva M.; Horn, Harald; Nielsen, Per H.; Lackner, Susanne

Candidatus Propionivibrio aalborgensis: A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants

FRONTIERS IN MICROBIOLOGY

IF4.5

2016-07-04

111

OAAI

Albertsen, Mads; McIlroy, Simon J.; Stokholm-Bjerregaard, Mikkel; Karst, Soren M.; Nielsen, Per H.

研究方向