logo
科言猫学术研究的AI总结
language
手机端手机端
  • Phone Feature微信小程序
简体中文简体中文
notice消息通知
博客博客
delete
arrow
返回
P

Pemra Doruker

University of Pittsburgh

34H指数
106论文数
3.8K被引数
收录论文 37
发表时间
logo
A Computationally Efficient Method to Generate Plausible Conformers for Ensemble Docking and Binding Free Energy Calculations一种计算高效的方法，用于生成合理的构象，以进行集合对接和结合自由能计算
errJournal of Chemical Information and Modeling
IF5.3
err2025-07-23
err0
errOAAI
errÖ. Zeynep Güner Yılmaz; Pemra Doruker; Ozge Kurkcuoglu
err分享
err收藏
Influence of point mutations on PR65 conformational adaptability: Insights from molecular simulations and nanoaperture optical tweezers
errSCIENCE ADVANCES
IF12.5
err2024-05-31
err1
errOAAI
errBanerjee, Anupam; Mathew, Samuel; Naqvi, Mohsin M.; Yilmaz, Sema Z.; Zacharopoulou, Maria; Doruker, Pemra; Kumita, Janet R.; Yang, Shang-Hua; Gur, Mert; Itzhaki, Laura S.; Gordon, Reuven; Bahar, Ivet
err分享
err收藏
GPCR kinases generate an APH1A phosphorylation barcode to regulate amyloid-D generation
errCELL REPORTS
IF6.9
err2022-07-01
err7
errOAAI
errK. Todd, Nicholas; Huang, Yunhong; Lee, Ji Young; Doruker, Pemra; Krieger, James M.; Salisbury, Ryan; MacDonald, Matthew; Bahar, Ivet; Thathiah, Amantha
err分享
err收藏
Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2022-02-04
err19
errOAAI
errKaynak, Burak T.; Krieger, James M.; Dudas, Balint; Dahmani, Zakaria L.; Costa, Mauricio G. S.; Balog, Erika; Scott, Ana Ligia; Doruker, Pemra; Perahia, David; Bahar, Ivet
err分享
err收藏
Precise druggability of the PTH type 1 receptor
errNATURE CHEMICAL BIOLOGY
IF13.7
err2021-12-23
err19
errOAAI
errSutkeviciute, Ieva; Lee, Ji Young; White, Alex D.; Maria, Christian Santa; Pena, Karina A.; Savransky, Sofya; Doruker, Pemra; Li, Hongchun; Lei, Saifei; Kaynak, Burak; Tu, Chialing; Clark, Lisa J.; Sanker, Subramaniam; Gardella, Thomas J.; Chang, Wenhan; Bahar, Ivet; Vilardaga, Jean-Pierre
err分享
err收藏
Precision druggability of a class B GPCR, the PTH type 1 receptor
errFASEB JOURNAL
IF4.2
err2021-05-14
err0
PREAI
errSutkeviciute, Ieva; Lee, Ji-Young; White, Alex; Doruker, Pemra; Pena, Karina; Sanker, Subramaniam; Lei, Saifei; Kaynak, Burak; Chang, Wenhan; Bahar, Ivet; Vilardaga, Jean-Pierre
err分享
err收藏
Editorial: Understanding Protein Dynamics, Binding and Allostery for Drug Design
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2021-04-21
err6
errOAAI
errHu, Guang; Doruker, Pemra; Li, Hongchun; Demet Akten, Ebru
err分享
err收藏
Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2020-10-01
err28
errOAAI
errKrieger, James M.; Doruker, Pemra; Scott, Ana Ligia; Perahia, David; Bahar, Ivet
err分享
err收藏
Allosteric interactions in the parathyroid hormone GPCR-arrestin complex formation
errNATURE CHEMICAL BIOLOGY
IF13.7
err2020-07-06
err34
errOAAI
errClark, Lisa J.; Krieger, James; White, Alex D.; Bondarenko, Vasyl; Lei, Saifei; Fang, Fei; Lee, Ji Young; Doruker, Pemra; Bottke, Thore; Jean-Alphonse, Frederic; Tang, Pei; Gardella, Thomas J.; Xiao, Kunhong; Sutkeviciute, Ieva; Coin, Irene; Bahar, Ivet; Vilardaga, Jean-Pierre
err分享
err收藏
Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2020-06-01
err79
errOAAI
errZhang, Yan; Doruker, Pemra; Kaynak, Burak; Zhang, She; Krieger, James; Li, Hongchun; Bahar, Ivet
err分享
err收藏
Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding环形蛋白动力学的调节有利于配体结合的功能机制
errBIOPHYSICAL JOURNAL
IF3.1
err2020-04-07
err7
PREAI
errLi, Hongchun; Doruker, Pemra; Hu, Guang; Bahar, Ivet
err分享
err收藏
Protein-Ligand Complexes as Constrained Dynamical Systems
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2019-03-26
err10
PREAI
errKaynak, Burak T.; Doruker, Pemra
err分享
err收藏
Ligand-binding affinity of alternative conformers of human β2-adrenergic receptor in the presence of intracellular loop 3 (ICL3) and their potential use in virtual screening studies
errCHEMICAL BIOLOGY & DRUG DESIGN
IF3.3
err2019-02-12
err10
PREAI
errDilcan, Gonca; Doruker, Pemra; Akten, Ebru Demet
err分享
err收藏
ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic ResolutionClustENM: 基于ENM的全原子分辨率基本构象空间采样
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2016-08-18
err42
errOAAI
errKurkcuoglu, Zeynep; Bahar, Ivet; Doruker, Pemra
err分享
err收藏
How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase Dynamics
errBIOPHYSICAL JOURNAL
IF3.1
err2015-09-01
err25
errOAAI
errKurkcuoglu, Zeynep; Findik, Doga; Akten, Ebru Demet; Doruker, Pemra
err分享
err收藏
Targeted Conformational Transitions of Multimeric Proteins by Monte Carlo Simulations Combined with Collective Anisotropic Network Model Modes
errBIOPHYSICAL JOURNAL
IF3.1
err2015-01-01
err0
errOAAI
errYesiltepe, Yasemin; Uyar, Arzu; Turgut, Deniz; Haliloglu, Turkan; Doruker, Pemra; Ozisik, Rahmi
err分享
err收藏
Features of Large Hinge-Bending Conformational Transitions. Prediction of Closed Structure from Open State
errBIOPHYSICAL JOURNAL
IF3.1
err2014-06-01
err23
errOAAI
errUyar, Arzu; Kantarci-Carsibasi, Nigar; Haliloglu, Turkan; Doruker, Pemra
err分享
err收藏
Effect of Intracellular Loop 3 on Intrinsic Dynamics of Human β2-Adrenergic Receptor
errBIOPHYSICAL JOURNAL
IF3.1
err2014-01-01
err0
errOAAI
errOzcan, Ozer; Uyar, Arzu; Doruker, Pemra; Akten, Ebru Demet
err分享
err收藏
Assessing Dynamic Features of NF-κB via Molecular Dynamics Simulations and Elastic Network Model
errBIOPHYSICAL JOURNAL
IF3.1
err2014-01-01
err0
errOAAI
errUyar, Arzu; Pande, Vineet; Mura, Cameron; McCammon, J. Andrew; Doruker, Pemra; Nilsson, Lennart
err分享
err收藏
Effect of Ligand Binding on the Intraminimum Dynamics of Proteins
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2010-08-20
err12
PREAI
errAlakent, Burak; Baskan, Sena; Doruker, Pemra
err分享
err收藏

研究方向

暂时未获取到该数据
合作学者
合作期刊
J
J. Andrew McCammon
H 指数: 134 · 论文数: 1.1K
I
IoshikhesIlya (İvet Bahar)
H 指数: 89 · 论文数: 588
R
Robert L. Jernigan
H 指数: 64 · 论文数: 410
L
Lennart Nilsson
H 指数: 59 · 论文数: 289
T
Thomas J. Gardella
H 指数: 56 · 论文数: 204
查看更多