Karel Břinda - Publications, H-index & Citations

Karel Břinda

Charles University Prague

13H指数

102论文数

969被引数

收录论文 11

发表时间

FroM Superstring to Indexing: a space-efficient index for unconstrained k-mer sets using the Masked Burrows-Wheeler Transform (MBWT)从超字符串到索引：使用掩码Burrows-Wheeler变换（MBWT）为无约束k-mer集合构建空间高效的索引

Bioinformatics Advances

IF2.8

2026-01-01

OAAI

Sladky, Ondrej; Vesely, Pavel; Brinda, Karel

Efficient and robust search of microbial genomes via phylogenetic compression 通过系统发育压缩实现微生物基因组的高效鲁棒搜索

NATURE METHODS

IF32.1

2025-04-09

OAAI

Brinda, Karel; Lima, Leandro; Pignotti, Simone; Quinones-Olvera, Natalia; Salikhov, Kamil; Chikhi, Rayan; Kucherov, Gregory

Rapid inference of antibiotic susceptibility phenotype of uropathogens using metagenomic sequencing with neighbor typing

MICROBIOLOGY SPECTRUM

IF3.8

2025-01-07

OAAI

Carroll, Amanda C.; Mortimer, Leanne; Ghosh, Hiren; Reuter, Sandra; Grundmann, Hajo; Brinda, Karel; Hanage, William P.; Li, Angel; Paterson, Aimee; Purssell, Andrew; Rooney, Ashley; Yee, Noelle R.; Coburn, Bryan; Able-Thomas, Shola; Antonio, Martin; Mcgeer, Allison; Macfadden, Derek R.

SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics

SCIENCE ADVANCES

IF12.5

2022-01-28

OAAI

Wikle, Nathan B.; Thu Nguyen-Anh Tran; Gentilesco, Bethany; Leighow, Scott M.; Albert, Emmy; Strong, Emily R.; Brinda, Karel; Inam, Haider; Yang, Fuhan; Hossain, Sajid; Chan, Philip; Hanage, William P.; Messick, Maria; Pritchard, Justin R.; Hanks, Ephraim M.; Boni, Maciej F.

High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria

MICROBIOME

IF12.7

2022-01-25

OAAI

Che, You; Xu, Xiaoqing; Yang, Yu; Brinda, Karel; Hanage, William; Yang, Chao; Zhang, Tong

REPLY TO PARTRIDGE ET AL.: Complementary bioinformatics and experimental approaches to investigate the transfer of AMR genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-08-27

OAAI

Che, You; Yang, Yu; Xu, Xiaoqing; Brinda, Karel; Polz, Martin F.; Hanage, William P.; Zhang, Tong

Optimal SARS-CoV-2 vaccine allocation using real-time attack-rate estimates in Rhode Island and Massachusetts

BMC MEDICINE

IF8.3

2021-07-13

OAAI

Thu Nguyen-Anh Tran; Wikle, Nathan B.; Albert, Emmy; Inam, Haider; Strong, Emily; Brinda, Karel; Leighow, Scott M.; Yang, Fuhan; Hossain, Sajid; Pritchard, Justin R.; Chan, Philip; Hanage, William P.; Hanks, Ephraim M.; Boni, Maciej F.

Challenges for enrichment analysis of AMR gene-bearing plasmids AMR基因质粒富集分析的挑战

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-05-11

159

OAAI

Che, You; Yang, Yu; Xu, Xiaoqing; Brinda, Karel; Polz, Martin F.; Hanage, William P.; Zhang, Tong

Simplitigs as an efficient and scalable representation of de Bruijn graphs

GENOME BIOLOGY

IF9.4

2021-04-06

OAAI

Brinda, Karel; Baym, Michael; Kucherov, Gregory

Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes 接合质粒与插入序列相互作用以形成抗菌素抗性基因的水平转移

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-02-01

159

OAAI

Che, You; Yang, Yu; Xu, Xiaoqing; Brinda, Karel; Polz, Martin F.; Hanage, William P.; Zhang, Tong

Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IF4.5

2020-04-21

OAAI

MacFadden, Derek R.; Coburn, Bryan; Brinda, Karel; Corbeil, Antoine; Daneman, Nick; Fisman, David; Lee, Robyn S.; Lipsitch, Marc; McGeer, Allison; Melano, Roberto G.; Mubareka, Samira; Hanage, William P.

研究方向