John I. Murray - Publications, H-index & Citations

John I. Murray

university of pennsylvania

37H指数

109论文数

9.1K被引数

收录论文 36

发表时间

A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types

GENOME RESEARCH

IF5.5

2024-08-14

OAAI

Peng, Felicia; Nordgren, C. Erik; Murray, John Isaac

Mechanisms of lineage specification in Caenorhabditis elegans 秀丽隐杆线虫谱系规范的机制

GENETICS

IF5.1

2023-10-17

PREAI

Liu, Jun; Murray, John Isaac

Transcript accumulation rates in the early Caenorhabditis elegans embryo

SCIENCE ADVANCES

IF12.5

2023-08-25

OAAI

Sivaramakrishnan, Priya; Watkins, Cameron; Murray, John Isaac

Young transposable elements rewired gene regulatory networks in human and chimpanzee hippocampal intermediate progenitors

DEVELOPMENT

IF3.6

2022-10-04

OAAI

Patoori, Sruti; Barnada, Samantha M.; Large, Christopher; Murray, John I.; Trizzino, Marco

The anterior Hox gene ceh-13 and elt-1/GATA activate the posterior Hox genes nob-1 and php-3 to specify posterior lineages in the C. elegans embryo

PLOS GENETICS

IF3.7

2022-05-02

OAAI

Murray, John Isaac; Preston, Elicia; Crawford, Jeremy P.; Rumley, Jonathan D.; Amom, Prativa; Anderson, Breana D.; Sivaramakrishnan, Priya; Patel, Shaili D.; Bennett, Barrington Alexander; Lavon, Teddy D.; Hsiao, Erin; Peng, Felicia; Zacharias, Amanda L.

Single cell biology-a Keystone Symposia report

ANNALS OF THE NEW YORK ACADEMY OF SCIENCES

IF4.8

2021-10-03

OAAI

Cable, Jennifer; Elowitz, Michael B.; Domingos, Ana I.; Habib, Naomi; Itzkovitz, Shalev; Hamidzada, Homaira; Balzer, Michael S.; Yanai, Itai; Liberali, Prisca; Whited, Jessica; Streets, Aaron; Cai, Long; Stergachis, Andrew B.; Hong, Clarice Kit Yee; Keren, Leeat; Guilliams, Martin; Alon, Uri; Shalek, Alex K.; Hamel, Regan; Pfau, Sarah J.; Raj, Arjun; Quake, Stephen R.; Zhang, Nancy R.; Fan, Jean; Trapnell, Cole; Wang, Bo; Greenwald, Noah F.; Vento-Tormo, Roser; Santos, Silvia D. M.; Spencer, Sabrina L.; Garcia, Hernan G.; Arekatla, Geethika; Gaiti, Federico; Arbel-Goren, Rinat; Rulands, Steffen; Junker, Jan Philipp; Klein, Allon M.; Morris, Samantha A.; Murray, John I.; Galloway, Kate E.; Ratz, Michael; Romeike, Merrit

Lineage-specific control of convergent differentiation by a Forkhead repressor

DEVELOPMENT

IF3.6

2021-09-28

OAAI

Mizeracka, Karolina; Rogers, Julia M.; Rumley, Jonathan D.; Shaham, Shai; Bulyk, Martha L.; Murray, John, I; Heiman, Maxwell G.

H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis

ELIFE

IF0

2019-10-01

OAAI

Poleshko, Andrey; Smith, Cheryl L.; Nguyen, Son C.; Sivaramakrishnan, Priya; Wong, Karen G.; Murray, John Isaac; Lakadamyali, Melike; Joyce, Eric F.; Jain, Rajan; Epstein, Jonathan A.

Silencing the alternative

ELIFE

IF0

2019-08-06

OAAI

Sivaramakrishnan, Priya; Murray, John Isaac

Gene expression distribution deconvolution in single-cell RNA sequencing 单细胞RNA测序中的基因表达分布去卷积

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2018-06-26

OAAI

Wang, Jingshu; Huang, Mo; Torre, Eduardo; Dueck, Hannah; Shaffer, Sydney; Murray, John; Raj, Arjun; Li, Mingyao; Zhang, Nancy R.

SAVER: gene expression recovery for single-cell RNA sequencing

NATURE METHODS

IF32.1

2018-06-25

500

OAAI

Huang, Mo; Wang, Jingshu; Torre, Eduardo; Dueck, Hannah; Shaffer, Sydney; Bonasio, Roberto; Murray, John I.; Raj, Arjun; Li, Mingyao; Zhang, Nancy R.

Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH

CELL SYSTEMS

IF7.7

2018-02-01

OAAI

Torre, Eduardo; Dueck, Hannah; Shaffer, Sydney; Gospocic, Janko; Gupte, Rohit; Bonasio, Roberto; Kim, Junhyong; Murray, John; Raj, Arjun

The Lipocalin LPR-1 Cooperates with LIN-3/EGF Signaling To Maintain Narrow Tube Integrity in Caenorhabditis elegans 脂质运载蛋白LPR-1与LIN-3/EGF信号传导合作，以维持秀丽隐杆线虫的狭窄管完整性

GENETICS

IF5.1

2017-03-01

OAAI

Pu, Pu; Stone, Craig E.; Burdick, Joshua T.; Murray, John I.; Sundaram, Meera V.

Overlapping cell population expression profiling and regulatory inference in C. elegans

BMC GENOMICS

IF3.7

2016-02-29

OAAI

Burdick, Joshua; Walton, Travis; Preston, Elicia; Zacharias, Amanda; Raj, Arjun; Murray, John Isaac

Gene targets of mouse miR-709: regulation of distinct pools

SCIENTIFIC REPORTS

IF3.9

2016-01-08

OAAI

Surendran, Sneha; Jideonwo, Victoria N.; Merchun, Chris; Ahn, Miwon; Murray, John; Ryan, Jennifer; Dunn, Kenneth W.; Kota, Janaiah; Morral, Nuria

Quantitative Differences in Nuclear β-catenin and TCF Pattern Embryonic Cells in C. elegans

PLOS GENETICS

IF3.7

2015-10-21

OAAI

Zacharias, Amanda L.; Walton, Travis; Preston, Elicia; Murray, John Isaac

The Bicoid Class Homeodomain Factors ceh-36/OTX and unc-30/PITX Cooperate in C. elegans Embryonic Progenitor Cells to Regulate Robust Development

PLOS GENETICS

IF3.7

2015-03-04

OAAI

Walton, Travis; Preston, Elicia; Nair, Gautham; Zacharias, Amanda L.; Raj, Arjun; Murray, John Isaac

Construction of a system for single-cell transgene induction in Caenorhabditis elegans using a pulsed infrared laser

METHODS

IF4.3

2014-08-01

OAAI

Churgin, Matthew A.; He, Liping; Murray, John I.; Christopher Fang-Yen

Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification

DEVELOPMENT

IF3.6

2013-08-15

OAAI

Nair, Gautham; Walton, Travis; Murray, John Isaac; Raj, Arjun

Multidimensional regulation of gene expression in the C. elegans embryo

GENOME RESEARCH

IF5.5

2012-04-16

135

OAAI

Murray, John Isaac; Boyle, Thomas J.; Preston, Elicia; Vafeados, Dionne; Mericle, Barbara; Weisdepp, Peter; Zhao, Zhongying; Bao, Zhirong; Boeck, Max; Waterston, Robert H.

研究方向