Xiaoyang Chen - Publications, H-index & Citations

Xiaoyang Chen

fudan university

18H指数

94论文数

1.3K被引数

收录论文 35

发表时间

Hi-Cformer enables multiscale chromatin contact map modeling for single-cell Hi-C data analysis Hi-Cformer实现对单细胞Hi-C数据分析的多尺度染色质接触图建模

Science Advances

IF12.5

2026-08-28

OAAI

Xiaoqing Wu; Zian Wang; Rui Jiang; Xiaoyang Chen

Cross-modality representation and multi-sample integration of spatially resolved omics data 空间分辨组学数据跨模态表示与多样本整合

Briefings in Bioinformatics

IF7.7

2026-05-01

PREAI

Li, Zhen; Cui, Xuejian; Chen, Xiaoyang; Gao, Zijing; Liu, Yuyao; Pan, Yan; Chen, Shengquan; Lv, Hairong; Zhai, Lei; Jiang, Rui

Spatial microbiome-metabolic crosstalk drives CD8+ T-cell exhaustion through the butyrate-HDAC axis in colorectal cancer 空间微生物组-代谢串扰通过丁酸-HDAC轴驱动结直肠癌中CD8+ T细胞耗竭

Frontiers in Microbiology

IF4.5

2025-12-08

OAAI

Xiaoyang Chen†; Yinxu Zhang†; Guangyu Zhang†; Dai Wang; Linhua Dou; Yuxi Wang; Zining Huang; Xiaomei Liu

Human-scATAC-Corpus: a comprehensive database of scATAC-seq data Human-scATAC-Corpus：一个全面的scATAC-seq数据数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2025-11-01

PREAI

Chen, Xiaoyang; Gao, Zijing; Li, Keyi; Wang, Zian; Jiang, Qun; Cui, Xuejian; Li, Zhen; Jiang, Rui

EpiAgent: foundation model for single-cell epigenomics EpiAgent：单细胞表观基因组学的基座模型

Nature Methods

IF32.1

2025-09-25

OAAI

Xiaoyang Chen; Keyi Li; Xuejian Cui; Zian Wang; Qun Jiang; Jiacheng Lin; Zhen Li; Zijing Gao; Hairong Lv; Rui Jiang

CREATE: cell-type-specific cis-regulatory element identification via discrete embedding 创建：基于离散嵌入的细胞类型特异性顺式调控元件识别

NATURE COMMUNICATIONS

IF15.7

2025-05-17

OAAI

Cui, Xuejian; Yin, Qijin; Gao, Zijing; Li, Zhen; Chen, Xiaoyang; Lv, Hairong; Chen, Shengquan; Liu, Qiao; Zeng, Wanwen

Paeonol Suppresses Bladder Cancer Progression via Apoptotic Pathways: Insights from In Vitro and In Vivo Studies 白藓抑制膀胱癌进展的机制：凋亡通路的作用——体外和体内研究的见解

PHARMACEUTICALS

IF4.8

2025-03-27

OAAI

Ying, Lu; Chen, Ruolan; Guo, Rui; Liang, Youfeng; Hao, Mingxuan; Chen, Xiaoyang; Zhang, Wenjing; Yu, Changyuan; Yang, Zhao

Ferroptosis suppressor protein 1 regulated oligodendrocytes ferroptosis rescued by idebenone in spinal cord injury 铁死亡抑制蛋白1调节艾地苯醌在脊髓损伤中拯救的少突胶质细胞铁死亡

FREE RADICAL BIOLOGY AND MEDICINE

IF8.2

2025-02-01

PREAI

Fan, Baoyou; Liu, Derong; Qin, Jia; Shi, Zhongju; Hu, Zicheng; Gao, Xiang; Ren, Yifei; Zhao, Pengtian; Chen, Xiaoyang; Ren, Yiming; Ning, Guangzhi; Liu, Tao; Feng, Shiqing

The effect of probiotics supplementation on cancer-treatment complications: a critical umbrella review of interventional meta-analyses

CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

IF8.8

2024-07-13

PREAI

Yang, Zhao; Zhang, Shijie; Ying, Lu; Zhang, Wenjing; Chen, Xiaoyang; Liang, Youfeng; Chen, Ruolan; Yao, Keying; Li, Chunhui; Yu, Changyuan; Jamilian, Parmida; Zarezadeh, Meysam; Kord-Varkaneh, Hamed; Wang, Jianfeng; Li, Hanmin

Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity

NATURE COMPUTATIONAL SCIENCE

IF18.3

2024-05-10

PREAI

Cui, Xuejian; Chen, Xiaoyang; Li, Zhen; Gao, Zijing; Chen, Shengquan; Jiang, Rui

scEpiTools: a database to comprehensively interrogate analytic tools for single-cell epigenomic data

JOURNAL OF GENETICS AND GENOMICS

IF7.1

2024-04-01

OAAI

Gao, Zijing; Chen, Xiaoyang; Li, Zhen; Cui, Xuejian; Jiang, Qun; Li, Keyi; Chen, Shengquan; Jiang, Rui

Cofea: correlation-based feature selection for single-cell chromatin accessibility data

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-12-18

OAAI

Li, Keyi; Chen, Xiaoyang; Song, Shuang; Hou, Lin; Chen, Shengquan; Jiang, Rui

Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics

GENOME RESEARCH

IF5.5

2023-10-30

OAAI

Li, Zhen; Chen, Xiaoyang; Zhang, Xuegong; Jiang, Rui; Chen, Shengquan

Specific subsets of urothelial bladder carcinoma infiltrating T cells associated with poor prognosis

SCIENTIFIC REPORTS

IF3.9

2023-08-07

OAAI

Guo, Rui; Wang, Luyao; Bai, Suhang; Kang, Danyue; Zhang, Wei; Ding, Zhenshan; Xing, Tianying; Hao, Mingxuan; Liang, Youfeng; Jiao, Binbin; Zhang, Guan; Ying, Lu; Chen, Ruolan; Chen, Xiaoyang; Zhang, Wenjing; Wang, Jiansong; Wan, Chuanxing; Yu, Changyuan; Wang, Haifeng; Yang, Zhao

Associations between cord blood metabolic factors and early-childhood growth and overweight and obesity

FRONTIERS IN ENDOCRINOLOGY

IF4.6

2023-07-11

OAAI

Jin, Wen-Yuan; Chen, Xiao-Yang; Han, Ting; Jin, Yan; Chen, Ting-Ting; Wang, Zi-Han; Zhao, Zheng-Yan; Zhu, Zhi-Wei

The effect of green coffee extract supplementation on obesity indices: critical umbrella review of interventional meta-analyses

CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

IF8.8

2023-06-21

PREAI

Yang, Zhao; Shao, Zhuo; Ouyang, Weiyi; Ying, Lu; Guo, Rui; Hao, Mingxuan; Liang, Youfeng; Zhang, Wenjing; Chen, Xiaoyang; Chen, Ruolan; Yu, Changyuan; Prabahar, Kousalya; Gaman, Mihnea-Alexandru; Kord-Varkaneh, Hamed; Li, Hao; Zhao, Binbin

Tertiary lymphoid structures in breast ductal carcinoma in situ correlate with adverse pathological parameters

HISTOPATHOLOGY

IF4.1

2023-01-30

PREAI

Zeng, Lixia; Koh, Valerie Cui Yun; Chen, Xiao-Yang; Tan, Puay Hoon

The Hand as Foot teaching method in the coronary veins

ASIAN JOURNAL OF SURGERY

IF3.8

2022-11-01

OAAI

Wang, Chun-fang; Zhang, Fang-xia; Chen, Xiao-yang; Wang, Jian

Case report: A rapid response to immunotherapy in a thoracic SMARCA4-deficient undifferentiated tumor with respiratory failure

FRONTIERS IN ONCOLOGY

IF3.3

2022-11-01

OAAI

Shi, Liyong; Lin, Lianshun; Ding, Yin; Zeng, Yiming; Chen, Xiaoyang

Airway acidification impaired host defense against Pseudomonas aeruginosa infection by promoting type 1 interferon β response

EMERGING MICROBES & INFECTIONS

IF7.5

2022-09-14

OAAI

Liu, Yang; Xie, Ying-Zhou; Shi, Yi-Han; Yang, Ling; Chen, Xiao-Yang; Wang, Ling-Wei; Qu, Jie-Ming; Weng, Dong; Wang, Xiao-Jian; Liu, Hai-Peng; Ge, Bao-Xue; Xu, Jin-Fu

研究方向