Uğis Sarkans

european bioinformatics institute

H指数:33

被引数:1.1万

个人简介

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教育背景

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工作经历

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荣誉奖项

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A FAIR road to a bioAFM databank

一个公平的道路通向生物原子力显微镜数据库

Nature Methods

IF32.1

2026-08-280

PRE

Jean-Luc Pellequer; Sebastian Aguayo; Andrea Alessandrini; David Alsteens; Toshio Ando; Audrey Beaussart; Michael Betton; Timo Betz; Kerstin G. Blank; Simone Bovio; Clément Campillo; Claudio Canale; Alexander X. Cartagena-Rivera; Filomena A. Carvalho; Ignacio Casuso; Guillaume Charras; Marti Checa; Liam Collins; Adai Colom; Luca Costa; Etienne Dague; Tanya E. S. Dahms; Pedro Jose de Pablo; Alexandra Delvallée; Simone Dinarelli; Lorna Dougan; Yves F. Dufrêne; Andra C. Dumitru; Yuri M. Efremov; Sofiane El-Kirat-Chatel; Paolo Facci; Georg E. Fantner; Amir Farokh Payam; Cécile Feuillie; Cristina Flors; Nancy Forde; Cécile Formosa-Dague; Gregory Francius; Clemens M. Franz; Kristian Franze; Ricardo Garcia; Sergi Garcia-Manyes; Núria Gavara; Marina I. Giannotti; Marco Girasole; Martin Guthold; George R. Heath; Céline Heu; Peter Hinterdorfer; Jamie K. Hobbs; Bart W. Hoogenboom; Sébastien Janel; Miklós Kellermayer; Petr Klapetek; Noriyuki Kodera; Melanie Koehler; Frank Lafont; Guillaume Lamour; Jessem Landoulsi; Valérie M. Laurent; Philippe Leclère; Malgorzata Lekka; Hongbin Li; Giovanni Longo; Arin Marchesi; Marion Mathelié-Guinlet; Gerald A. Meininger; Ioanna Mela; Pierre-Emmanuel Milhiet; Ruben Millan-Solsona; Tea Mišić Radić; Michaël Molinari; Fernando Moreno-Herrero; Michael A. Nash; Olivier Noël; Yoo Jin Oh; Laia Pasquina-Lemonche; Shivprasad Patil; Patricia Pedraz; Ana Paula Pêgo; Thomas T. Perkins; Martin Pesl; Tri Thanh Pham; Laura Picas; Alessandro Podestà; Johannes Preiner; Jan Přibyl; Roger Proksch; Pierre-Henri Puech; Alice L. B. Pyne; Manfred Radmacher; Lorena Redondo-Morata; Felix Rico; Wouter H. Roos; Robert Ros; Nuno C. Santos; Ugis Sarkans; Tilman E. Schäffer; Hermann Schillers; Zhifeng Shao; Delphine Sicard; Adam Cohen Simonsen; Igor Sokolov; Susana R. Sousa; Bjørn T. Stokke; Andreas Stylianou; Marek Szymonski; Florence Tama; Neil H. Thomson; Takayuki Uchihashi; Massimo Vassalli; Claude Verdier; Anthony Vial; Véronique Vié; Tomaso Zambelli; Renato Zenobi; Peng Zheng; Claire Valotteau

BioStudies Database: a platform for life sciences study data dissemination

BioStudies数据库：一个用于生命科学研究数据传播的平台

Journal of Molecular Biology

IF4.5

2026-05-200

OAAI

Curcumin-Based Virtual Screening Identifies Inhibitors of SARS-CoV-2 Spike Protein and ACE2 Receptor Binding

Medicinal Chemistry

IF2.6

2026-01-011

PRE

BioSamples database: the global hub for sample metadata and multi-omics integration

生物样本数据库：样本元数据和多组学集成的全球枢纽

NUCLEIC ACIDS RESEARCH

IF13.1

2025-11-010

OAAI

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2025

欧洲分子生物学实验室的欧洲生物信息学研究所（EMBL-EBI）在2025年

NUCLEIC ACIDS RESEARCH

IF13.1

2025-11-012

PRE

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

Nature Methods

IF32.1

2025-09-150

PRE

bia-binder: a web-native cloud compute service for the bioimage analysis community

BIOINFORMATICS

IF5.4

2025-08-010

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024

NUCLEIC ACIDS RESEARCH

IF13.1

2024-11-281

OAAI

MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data

Nature Microbiology

IF19.4

2024-05-070

PRE

Kang Soo Lee; Zachary Landry; Awais Athar; Uria Alcolombri; Pratchaya Pramoj Na Ayutthaya; David Berry; Philippe de Bettignies; Ji-Xin Cheng; Gabor Csucs; Li Cui; Volker Deckert; Thomas Dieing; Jennifer Dionne; Ondrej Doskocil; Glen D’Souza; Cristina García-Timermans; Notburga Gierlinger; Keisuke Goda; Roland Hatzenpichler; Richard J. Henshaw; Wei E. Huang; Ievgeniia Iermak; Natalia P. Ivleva; Janina Kneipp; Patrick Kubryk; Kirsten Küsel; Tae Kwon Lee; Sung Sik Lee; Bo Ma; Clara Martínez-Pérez; Pavel Matousek; Rainer U. Meckenstock; Wei Min; Peter Mojzeš; Oliver Müller; Naresh Kumar; Per Halkjær Nielsen; Ioan Notingher; Márton Palatinszky; Fátima C. Pereira; Giuseppe Pezzotti; Zdenek Pilat; Filip Plesinger; Jürgen Popp; Alexander J. Probst; Alessandra Riva; Amr. A. E. Saleh; Ota Samek; Haley M. Sapers; Olga T. Schubert; Astrid K. M. Stubbusch; Loza F. Tadesse; Gordon T. Taylor; Michael Wagner; Jing Wang; Huabing Yin; Yang Yue; Renato Zenobi; Jacopo Zini; Ugis Sarkans; Roman Stocker

Be sustainable: EOSC-Life recommendations for implementation of FAIR principles in life science data handling

EMBO JOURNAL

IF8.3

2023-11-158

David, Romain; Rybina, Arina; Burel, Jean-Marie; Heriche, Jean-Karim; Audergon, Pauline; Boiten, Jan-Willem; Coppens, Frederik; Crockett, Sara; Exter, Katrina; Fahrner, Sven; Fratelli, Maddalena; Goble, Carole; Gormanns, Philipp; Grantner, Tobias; Gruening, Bjoern; Gurwitz, Kim Tamara; Hancock, John M.; Harmse, Henriette; Holub, Petr; Juty, Nick; Karnbach, Geoffrey; Karoune, Emma; Keppler, Antje; Lancelotti, Carla; Klemeier, Jessica; Legras, Jean-Luc; Lister, Allyson L.; Longo, Dario Livio; Ludwig, Rebecca; Madon, Benedicte; Massimi, Marzia; Matser, Vera; Matteoni, Rafaele; Mayrhofer, Michaela Th; Ohmann, Christian; Panagiotopoulou, Maria; Parkinson, Helen; Perseil, Isabelle; Pfander, Claudia; Pieruschka, Roland; Raess, Michael; Rauber, Andreas; Richard, Audrey S.; Romano, Paolo; Rosato, Antonio; Sanchez-Pla, Alex; Sansone, Susanna-Assunta; Sarkans, Ugis; Serrano-Solano, Beatriz; Tang, Jing; Tanoli, Ziaurrehman; Tedds, Jonathan; Wagener, Harald; Weise, Martin; Westerhoff, Hans, V; Wittner, Rudolf; Ewbank, Jonathan; Blomberg, Niklas; Gribbon, Philip

The discovAIR project: a roadmap towards the Human Lung Cell Atlas

EUROPEAN RESPIRATORY JOURNAL

IF21

2022-01-2714

OAAI

Luecken, Malte D.; Zaragosi, Laure-Emmanuelle; Madissoon, Elo; Sikkema, Lisa; Firsova, Alexandra B.; De Domenico, Elena; Kuemmerle, Louis; Saglam, Adem; Berg, Marijn; Gay, Aurore C. A.; Schniering, Janine; Mayr, Christoph H.; Abalo, Xesus M.; Larsson, Ludvig; Sountoulidis, Alexandros; Teichmann, Sarah A.; Van Eunen, Karen; Koppelman, Gerard H.; Saeb-Parsy, Kourosh; Leroy, Sylvie; Powell, Pippa; Sarkans, Ugis; Timens, Wim; Lundeberg, Joakim; van den Berge, Maarten; Nilsson, Mats; Horvath, Peter; Denning, Jessica; Papatheodorou, Irene; Schultze, Joachim L.; Schiller, Herbert B.; Barbry, Pascal; Petoukhov, Ilya; Misharin, Alexander V.; Adcock, Ian M.; von Papen, Michael; Theis, Fabian J.; Samakovlis, Christos; Meyer, Kerstin B.; Nawijn, Martijn C.

NATURE METHODS

IF32.1

2021-05-2163

OAAI

Sarkans, Ugis; Chiu, Wah; Collinson, Lucy; Darrow, Michele C.; Ellenberg, Jan; Grunwald, David; Heriche, Jean-Karim; Iudin, Andrii; Martins, Gabriel G.; Meehan, Terry; Narayan, Kedar; Patwardhan, Ardan; Russell, Matthew Robert Geoffrey; Saibil, Helen R.; Strambio-De-Castillia, Caterina; Swedlow, Jason R.; Tischer, Christian; Uhlmann, Virginie; Verkade, Paul; Barlow, Mary; Bayraktar, Omer; Birney, Ewan; Catavitello, Cesare; Cawthorne, Christopher; Wagner-Conrad, Stephan; Duke, Elizabeth; Paul-Gilloteaux, Perrine; Gustin, Emmanuel; Harkiolaki, Maria; Kankaanpaa, Pasi; Lemberger, Thomas; McEntyre, Jo; Moore, Josh; Nicholls, Andrew W.; Onami, Shuichi; Parkinson, Helen; Parsons, Maddy; Romanchikova, Marina; Sofroniew, Nicholas; Swoger, Jim; Utz, Nadine; Voortman, Lenard M.; Wong, Frances; Zhang, Peijun; Kleywegt, Gerard J.; Brazma, Alvis

A global view of standards for open image data formats and repositories

NATURE METHODS

IF32.1

2021-05-0433

OAAI

From ArrayExpress to BioStudies

NUCLEIC ACIDS RESEARCH

IF13.1

2020-11-1955

OAAI

Network integration and modelling of dynamic drug responses at multi-omics levels

COMMUNICATIONS BIOLOGY

IF5.1

2020-10-1530

OAAI

Selevsek, Nathalie; Caiment, Florian; Nudischer, Ramona; Gmuender, Hans; Agarkova, Irina; Atkinson, Francis L.; Bachmann, Ivo; Baier, Vanessa; Barel, Gal; Bauer, Chris; Boerno, Stefan; Bosc, Nicolas; Clayton, Olivia; Cordes, Henrik; Deeb, Sally; Gotta, Stefano; Guye, Patrick; Hersey, Anne; Hunter, Fiona M. I.; Kunz, Laura; Lewalle, Alex; Lienhard, Matthias; Merken, Jort; Minguet, Jasmine; Oliveira, Bernardo; Pluess, Carla; Sarkans, Ugis; Schrooders, Yannick; Schuchhardt, Johannes; Smit, Ines; Thiel, Christoph; Timmermann, Bernd; Verheijen, Marcha; Wittenberger, Timo; Wolski, Witold; Zerck, Alexandra; Heymans, Stephane; Kuepfer, Lars; Roth, Adrian; Schlapbach, Ralph; Niederer, Steven; Herwig, Ralf; Kleinjans, Jos

The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods

欧盟-毒物风险方法文件、数据处理和化学测试管道，用于新方法方法的监管使用

ARCHIVES OF TOXICOLOGY

IF6.9

2020-07-0629

OAAI

Krebs, Alice; van Vugt-Lussenburg, Barbara M. A.; Waldmann, Tanja; Albrecht, Wiebke; Boei, Jan; ter Braak, Bas; Brajnik, Maja; Braunbeck, Thomas; Brecklinghaus, Tim; Busquet, Francois; Dinnyes, Andras; Dokler, Joh; Dolde, Xenia; Exner, Thomas E.; Fisher, Ciaran; Fluri, David; Forsby, Anna; Hengstler, Jan G.; Holzer, Anna-Katharina; Janstova, Zofia; Jennings, Paul; Kisitu, Jaffar; Kobolak, Julianna; Kumar, Manoj; Limonciel, Alice; Lundqvist, Jessica; Mihalik, Balazs; Moritz, Wolfgang; Pallocca, Giorgia; Ulloa, Andrea Paola Cediel; Pastor, Manuel; Rovida, Costanza; Sarkans, Ugis; Schimming, Johannes P.; Schmidt, Bela Z.; Stoeber, Regina; Strassfeld, Tobias; van de Water, Bob; Wilmes, Anja; van der Burg, Bart; Verfaillie, Catherine M.; von Hellfeld, Rebecca; Vrieling, Harry; Vrijenhoek, Nanette G.; Leist, Marcel

A call for public archives for biological image data

NATURE METHODS

IF32.1

2018-10-3081

OAAI

ArrayExpress update - from bulk to single-cell expression data

NUCLEIC ACIDS RESEARCH

IF13.1

2018-10-24434

OAAI

Image Data Resource: a bioimage data integration and publication platform (vol 14, pg 775, 2017)

NATURE METHODS