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S

Stephen Nayfach

Lawrence Berkeley National Laboratory
H指数:34
被引数:1.1万

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荣誉奖项

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Customizing CRISPR–Cas PAM specificity with protein language models

使用蛋白质语言模型定制crispr-cas PAM特异性

Nature Biotechnology
IF41.7
2026-02-020
PRE
Stephen Nayfach; Aadyot Bhatnagar; Andrey Novichkov; Nahye Kim; Alexander M. Hoffnagle; Riffat Hussain; Gabriella O. Estevam; Emily Hill; Jeffrey A. Ruffolo; Rachel A. Silverstein; Joseph Gallagher; Benjamin P. Kleinstiver; Alexander J. Meeske; Peter Cameron; Ali Madani
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata

IMG/PR: 来自基因组和元基因组的质粒数据库，具有丰富的注释和元数据

NUCLEIC ACIDS RESEARCH
IF13.1
2023-11-0116
OA
Camargo, Antonio Pedro; Call, Lee; Roux, Simon; Nayfach, Stephen; Huntemann, Marcel; Palaniappan, Krishnaveni; Ratner, Anna; Chu, Ken; Mukherjeep, Supratim; Reddy, T. B. K.; Chen, I-Min A.; Ivanova, Natalia N.; Eloe-Fadrosh, Emiley A.; Woyke, Tanja; Baltrus, David A.; Castaneda-Barba, Salvador; de la Cruz, Fernando; Funnell, Barbara E.; Hall, James P. J.; Mukhopadhyay, Aindrila; Rocha, Eduardo P. C.; Stalder, Thibault; Top, Eva; Kyrpides, Nikos C.
Unraveling the functional dark matter through global metagenomics

通过全球宏基因组学解开功能性暗物质

Nature
IF48.5
2023-10-110
OAAI
Georgios A. Pavlopoulos; Fotis A. Baltoumas; Sirui Liu; Oguz Selvitopi; Antonio Pedro Camargo; Stephen Nayfach; Ariful Azad; Simon Roux; Lee Call; Natalia N. Ivanova; I. Min Chen; David Paez-Espino; Evangelos Karatzas; Ioannis Iliopoulos; Konstantinos Konstantinidis; James M. Tiedje; Jennifer Pett-Ridge; David Baker; Axel Visel; Christos A. Ouzounis; Sergey Ovchinnikov; Aydin Buluç; Nikos C. Kyrpides
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes

用824分离的参考基因组扩展放线菌的基因组百科全书

CELL GENOMICS
IF9
2022-12-0122
OAAI
Seshadri, Rekha; Roux, Simon; Huber, Katharina J.; Wu, Dongying; Yu, Sora; Udwary, Dan; Call, Lee; Nayfach, Stephen; Hahnke, Richard L.; Pukall, Rudiger; White, James R.; Varghese, Neha J.; Webb, Cody; Palaniappan, Krishnaveni; Reimer, Lorenz C.; Sarda, Joaquim; Bertsch, Jonathon; Mukherjee, Supratim; Reddy, T. B. K.; Hajek, Patrick P.; Huntemann, Marcel; Chen, I-Min A.; Spunde, Alex; Clum, Alicia; Shapiro, Nicole; Wu, Zong-Yen; Zhao, Zhiying; Zhou, Yuguang; Evtushenko, Lyudmila; Thijs, Sofie; Stevens, Vincent; Eloe-Fadrosh, Emiley A.; Mouncey, Nigel J.; Yoshikuni, Yasuo; Whitman, William B.; Klenk, Hans-Peter; Woyke, Tanja; Goeker, Markus; Kyrpides, Nikos C.; Ivanova, Natalia N.
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata

IMG/VR v4: 在广泛的功能，分类和生态元数据框架内的未培养病毒基因组的扩展数据库

NUCLEIC ACIDS RESEARCH
IF13.1
2022-11-18119
OA
Camargo, Antonio Pedro; Nayfach, Stephen; Chen, I-Min A.; Palaniappan, Krishnaveni; Ratner, Anna; Chu, Ken; Ritter, Stephan J.; Reddy, T. B. K.; Mukherjee, Supratim; Schulz, Frederik; Call, Lee; Neches, Russell Y.; Woyke, Tanja; Ivanova, Natalia N.; Eloe-Fadrosh, Emiley A.; Kyrpides, Nikos C.; Roux, Simon
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

基于单细胞基因组分辨率的全社区采样解剖优势温泉微生物种群

ISME JOURNAL
IF10
2021-12-3019
OAAI
Bowers, Robert M.; Nayfach, Stephen; Schulz, Frederik; Jungbluth, Sean P.; Ruhl, Ilona A.; Sheremet, Andriy; Lee, Janey; Goudeau, Danielle; Eloe-Fadrosh, Emiley A.; Stepanauskas, Ramunas; Malmstrom, Rex R.; Kyrpides, Nikos C.; Dunfield, Peter F.; Woyke, Tanja
Ecology and molecular targets of hypermutation in the global microbiome

全球微生物组中超突变的生态学和分子靶标

NATURE COMMUNICATIONS
IF15.7
2021-05-2427
OAAI
Roux, Simon; Paul, Blair G.; Bagby, Sarah C.; Nayfach, Stephen; Allen, Michelle A.; Attwood, Graeme; Cavicchioli, Ricardo; Chistoserdova, Ludmila; Gruninger, Robert J.; Hallam, Steven J.; Hernandez, Maria E.; Hess, Matthias; Liu, Wen-Tso; McAllister, Tim A.; O'Malley, Michelle A.; Peng, Xuefeng; Rich, Virginia, I; Saleska, Scott R.; Eloe-Fadrosh, Emiley A.
A genomic catalog of Earth's microbiomes (Nov, 10.1038/s41587-020-0718-6, 2020)

地球微生物组的基因组目录 (11月，10.1038/s41587-020-0718-6，2020)

NATURE BIOTECHNOLOGY
IF41.7
2021-04-016
OAAI
Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I- Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A.
A genomic catalog of Earth's microbiomes (November, 10.1038/s41587-020-0718-6, 2020)

地球微生物组的基因组目录 (11月，10.1038/s41587-020-0718-6，2020)

NATURE BIOTECHNOLOGY
IF41.7
2020-11-184
OAAI
Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A.
A genomic catalog of Earth's microbiomes

地球微生物组的基因组目录

NATURE BIOTECHNOLOGY
IF41.7
2020-11-09458
OAAI
Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A.

研究方向

暂未获取到该数据
N
Nikos C. Kyrpides
H 指数:116论文数:956被引数:8.8万
S
Simon Roux
H 指数:77论文数:396被引数:3.1万
E
Emiley A. Eloe‐Fadrosh
H 指数:55论文数:218被引数:1.8万
F
Frederik Schulz
H 指数:44论文数:164被引数:1.2万
T
Tanja Woyke
H 指数:104论文数:847被引数:5.1万
N
Natalia Ivanova
H 指数:89论文数:691被引数:4.4万
D
David Páez-Espino
H 指数:40论文数:93被引数:1.1万
T
T. B. K. Reddy
H 指数:38论文数:191被引数:1.0万
K
Katherine S. Pollard
H 指数:100论文数:487被引数:8.0万
I
I-Min A. Chen
H 指数:30论文数:91被引数:9,354