Ezewudo, Matthew; Borens, Amanda; Chiner-Oms, Alvaro; Miotto, Paolo; Chindelevitch, Leonid; Starks, Angela M.; Hanna, Debra; Liwski, Richard; Zignol, Matteo; Gilpin, Christopher; Niemann, Stefan; Kohl, Thomas Andreas; Warren, Robin M.; Crook, Derrick; Gagneux, Sebastien; Hoffner, Sven; Rodrigues, Camilla; Comas, Inaki; Engelthaler, David M.; Alland, David; Rigouts, Leen; Lange, Christoph; Dheda, Keertan; Hasan, Rumina; McNerney, Ruth; Cirillo, Daniela M.; Schito, Marco; Rodwell, Timothy C.; Posey, James

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

结核分枝杆菌的全基因组测序: 当前标准和开放问题

NATURE REVIEWS MICROBIOLOGY

IF103.3

2019-06-17260

OAAI

Meehan, Conor J.; Goig, Galo A.; Kohl, Thomas A.; Verboven, Lennert; Dippenaar, Anzaan; Ezewudo, Matthew; Farhat, Maha R.; Guthrie, Jennifer L.; Laukens, Kris; Miotto, Paolo; Ofori-Anyinam, Boatema; Dreyer, Viola; Supply, Philip; Suresh, Anita; Utpatel, Christian; van Soolingen, Dick; Zhou, Yang; Ashton, Philip M.; Brites, Daniela; Cabibbe, Andrea M.; de Jong, Bouke C.; de Vos, Margaretha; Menardo, Fabrizio; Gagneux, Sebastien; Gao, Qian; Heupink, Tim H.; Liu, Qingyun; Loiseau, Chloe; Rigouts, Leen; Rodwell, Timothy C.; Tagliani, Elisa; Walker, Timothy M.; Warren, Robin M.; Zhao, Yanlin; Zignol, Matteo; Schito, Marco; Gardy, Jennifer; Cirillo, Daniela M.; Niemann, Stefan; Comas, Inaki; Van Rie, Annelies

Beyond multidrug resistance: Leveraging rare variants with machine and statistical learning models in Mycobacterium tuberculosis resistance prediction

EBIOMEDICINE

IF10.8

2019-05-0147

OAAI

Building the Framework for Standardized Clinical Laboratory Reporting of Next-generation Sequencing Data for Resistance-associated Mutations in Mycobacterium tuberculosis Complex

CLINICAL INFECTIOUS DISEASES

IF7.3

2019-03-1813

OAAI

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

SCIENTIFIC REPORTS

IF3.9

2018-10-1861

OAAI

Ezewudo, Matthew; Borens, Amanda; Chiner-Oms, Alvaro; Miotto, Paolo; Chindelevitch, Leonid; Starks, Angela M.; Hanna, Debra; Liwskil, Richard; Zignol, Matteo; Gilpin, Christopher; Niemann, Stefan; Kohl, Thomas Andreas; Warren, Robin M.; Crook, Derrick; Gagneux, Sebastien; Hoffner, Sven; Rodrigues, Camilla; Comas, Inaki; Engelthaler, David M.; Alland, David; Rigouts, Leen; Lange, Christoph; Dheda, Keertan; Hasan, Rumina; McNerney, Ruth; Cirillo, Daniela M.; Schito, Marco; Rodwell, Timothy C.; Posey, James

Genetic sequencing for surveillance of drug resistance in tuberculosis in highly endemic countries: a multi-country population-based surveillance study

LANCET INFECTIOUS DISEASES

IF31

2018-06-01107

OAAI

Zignol, Matteo; Cabibbe, Andrea Maurizio; Dean, Anna S.; Glaziou, Philippe; Alikhanova, Natavan; Ama, Cecilia; Andres, Sonke; Barbova, Anna; Borbe-Reyes, Angeli; Chin, Daniel P.; Cirillo, Daniela Maria; Colvin, Charlotte; Dadu, Andrei; Dreyer, Andries; Driesen, Michele; Gilpin, Christopher; Hasan, Rumina; Hasan, Zahra; Hoffner, Sven; Hussain, Alamdar; Ismail, Nazir; Kamal, S. M. Mostofa; Khanzada, Faisal Masood; Kimerling, Michael; Kohl, Thomas Andreas; Mansjo, Mikael; Miotto, Paolo; Mukadi, Ya Diul; Mvusi, Lindiwe; Niemann, Stefan; Omar, Shaheed V.; Rigouts, Leen; Schito, Marco; Sela, Ivita; Seyfaddinova, Mehriban; Skenders, Girts; Skrahina, Alena; Tahseen, Sabira; Wells, William A.; Zhurilo, Alexander; Weyer, Karin; Floyd, Katherine; Raviglione, Mario C.

A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis

EUROPEAN RESPIRATORY JOURNAL

IF21

2017-12-28257

OAAI

Miotto, Paolo; Tessema, Belay; Tagliani, Elisa; Chindelevitch, Leonid; Starks, Angela M.; Emerson, Claudia; Hanna, Debra; Kim, Peter S.; Liwski, Richard; Zignol, Matteo; Gilpin, Christopher; Niemann, Stefan; Denkinger, Claudia M.; Fleming, Joy; Warren, Robin M.; Crook, Derrick; Posey, James; Gagneux, Sebastien; Hoffner, Sven; Rodrigues, Camilla; Comas, Inaki; Engelthaler, David M.; Murray, Megan; Alland, David; Rigouts, Leen; Lange, Christoph; Dheda, Keertan; Hasan, Rumina; Ranganathan, Uma Devi K.; McNerney, Ruth; Ezewudo, Matthew; Cirillo, Daniela M.; Schito, Marco; Koser, Claudio U.; Rodwell, Timothy C.

Population-based resistance of Mycobacterium tuberculosis isolates to pyrazinamide and fluoroquinolones: results from a multicountry surveillance project

LANCET INFECTIOUS DISEASES

IF31

2016-10-01132

OAAI

Zignol, Matteo; Dean, Anna S.; Alikhanova, Natavan; Andres, Sonke; Cabibbe, Andrea Maurizio; Cirillo, Daniela Maria; Dadu, Andrei; Dreyer, Andries; Driesen, Michele; Gilpin, Christopher; Hasan, Rumina; Hasan, Zahra; Hoffner, Sven; Husain, Ashaque; Hussain, Alamdar; Ismail, Nazir; Kamal, Mostofa; Mansjo, Mikael; Mvusi, Lindiwe; Niemann, Stefan; Omar, Shaheed V.; Qadeer, Ejaz; Rigouts, Leen; Ruesch-Gerdes, Sabine; Schito, Marco; Seyfaddinova, Mehriban; Skrahina, Alena; Tahseen, Sabira; Wells, William A.; Mukadi, Ya Diul; Kimerling, Michael; Floyd, Katherine; Weyer, Karin; Raviglione, Mario C.

World TB Day 2016: reflections on the global TB emergency

LANCET RESPIRATORY MEDICINE

IF32.8

2016-04-0110

PREAI

Tuberculosis-advances in development of new drugs, treatment regimens, host-directed therapies, and biomarkers

LANCET INFECTIOUS DISEASES

IF31

2016-04-01241

OAAI

A Collaborative Approach for ReSeq-ing Mycobacterium tuberculosis Drug Resistance: Convergence for Drug and Diagnostic Developers

EBIOMEDICINE