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Q

Qiyun Zhu

University of California San Diego
H指数:52
被引数:4.1万

个人简介

We are the Qiyun Lab at the Biodesign Center for Fundamental and Applied Microbiomics (CFAM) at Arizona State University (ASU). We study computational microbiomics. We are interested in the development of computational tools and resources to improve microbiome data analytics, the study of various host and environmental microbiomes and their influence on human health, and the investigation of the evolution of microbes and their hosts, with a focus on vertical and horizontal genetic connections between organisms. We strive to expand understanding of the microbial world through its multiple levels: genes, genomes, lineages, communities, hosts, and environments.

教育背景

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工作经历

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荣誉奖项

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Scikit-bio: a fundamental Python library for biological omic data analysis

Scikit-bio: 用于生物组学数据分析的基本Python库

Nature Methods
IF32.1
2025-12-110
PRE
Matthew Aton; Daniel McDonald; Jorge Cañardo Alastuey; Raeed Azom; Paarth Batra; Valentyn Bezshapkin; Evan Bolyen; Alexander Cagle; J. Gregory Caporaso; Justine W. Debelius; Kestrel Gorlick; Nirmitha Hamsanipally; Lars Hunger; Aryan Keluskar; Disen Liao; Yang Young Lu; Jose A. Navas-Molina; Anders Pitman; Jai Ram Rideout; Anton Sazonov; Bharath Sathappan; Karen Schwarzberg Lipson; Igor Sfiligoi; Chris Tapo; Yoshiki Vázquez-Baeza; Zijun Wu; Zhenjiang Zech Xu; Mingsong Sam Ye; Jianshu Zhao; Rob Knight; James T. Morton; Qiyun Zhu
Associations between relative abundances of Bifidobacterium species in the gut and DNA methylation of cortisol-related genes in a pediatric population

肠道中双歧杆菌属（Bifidobacterium）相对丰度与皮质醇相关基因DNA甲基化之间的关联：一项针对儿科人群的研究

Frontiers in Microbiology
IF4.5
2025-09-220
OAAI
Samantha A. Harker; Kevin S. Bonham; Shelley Hoeft McCann; Alexandra R. Volpe; Qiyun Zhu; Viren D’Sa; Daphne Koinis-Mitchell; Sean C. L. Deoni; Vanja Klepac-Ceraj; Candace R. Lewis
CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments

CaDAVEr：一个跨越脊椎动物环境的微生物分解者宏基因组组装基因组目录

MICROBIOLOGY RESOURCE ANNOUNCEMENTS
IF0.6
2025-09-010
PRE
Seitz, Valerie A.; McGivern, Bridget B.; Shaffer, Michael; Borton, Mikayla A.; Belk, Aeriel D.; Ghadermazi, Parsa; Martino, Cameron; Shenhav, Liat; Zhang, Anru R.; Shi, Pixu; Emmons, Alexandra; Deel, Heather; Xu, Zhenjiang Zech; Nieciecki, Victoria; Zhu, Qiyun; Cantrell, Kalen; Ben-Hur, Asa; Reed, Sasha C.; Humphry, Greg C.; Ackermann, Gail; McDonald, Daniel; Chan, Siu Hung Joshua; Connor, Melissa; Boyd, Derek A.; Smith, Jake; Watson, Jenna M. S.; Vidoli, Giovanna; Steadman, Dawnie; Lynne, Aaron M.; Bucheli, Sibyl; Carter, David O.; Burcham, Zachary M.; Knight, Rob; Wrighton, Kelly C.; Metcalf, Jessica L.
Metatranscriptomics uncovers diurnal functional shifts in bacterial transgenes with profound metabolic effects

元转录组学揭示了细菌转基因的昼夜功能转变，并具有深远代谢影响。

Cell Host & Microbe
IF18.7
2025-06-180
PRE
Stephany Flores Ramos; Nicole Siguenza; Wuling Zhong; Ipsita Mohanty; Amulya Lingaraju; R. Alexander Richter; Smruthi Karthikeyan; April L. Lukowski; Qiyun Zhu; Wilhan D.G. Nunes; Jasmine Zemlin; Zhenjiang Zech Xu; Jeff Hasty; Pieter C. Dorrestein; Satchidananda Panda; Rob Knight; Amir Zarrinpar
SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

SARS-CoV-2感染性可以通过糖萼的细菌修饰来调节

MBIO
IF4.7
2025-02-250
OAAI
Martino, Cameron; Kellman, Benjamin P.; Sandoval, Daniel R.; Clausen, Thomas Mandel; Cooper, Robert; Benjdia, Alhosna; Soualmia, Feryel; Clark, Alex E.; Garretson, Aaron F.; Marotz, Clarisse A.; Song, Se Jin; Wandro, Stephen; Zaramela, Livia S.; Salido, Rodolfo A.; Zhu, Qiyun; Armingol, Erick; Vazquez-Baeza, Yoshiki; Mcdonald, Daniel; Sorrentino, James T.; Taylor, Bryn; Belda-Ferre, Pedro; Das, Promi; Ali, Farhana; Liang, Chenguang; Zhang, Yujie; Schifanella, Luca; Covizzi, Alice; Lai, Alessia; Riva, Agostino; Basting, Christopher; Broedlow, Courtney Ann; Havulinna, Aki S.; Jousilahti, Pekka; Estaki, Mehrbod; Kosciolek, Tomasz; Kuplicki, Rayus; Victor, Teresa A.; Paulus, Martin P.; Savage, Kristen E.; Benbow, Jennifer L.; Spielfogel, Emma S.; Anderson, Cheryl A. M.; Martinez, Maria Elena; Lacey, James V.; Huang, Shi; Haiminen, Niina; Parida, Laxmi; Kim, Ho-Cheol; Gilbert, Jack A.; Sweeney, Daniel A.; Allard, Sarah M.; Swafford, Austin D.; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Zengler, Karsten; Klatt, Nichole R.; Hasty, Jeff; Berteau, Olivier; Carlin, Aaron F.; Esko, Jeffrey D.; Lewis, Nathan E.; Knight, Rob
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy (vol 7, pg e00167, 2023)

基于匹配的参考基因组，同时绕过分类学，对宏基因组群落生态学进行系统发育感知分析 (第7卷，pg e00167，2023)

MSYSTEMS
IF4.6
2024-11-190
PRE
Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; Mcgrath, Imran; Mcdonald, Daniel; Haiminen, Niina; Armstrong, George; Vazquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D.; Swafford, Austin D.; Das, Promi; Shaffer, Justin P.; Lejzerowicz, Franck; Belda-Ferre, Pedro; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Kim, Ho-Cheol; Jain, Mohit; Inouye, Michael; Gilbert, Jack A.; Knight, Rob
Robustness of cancer microbiome signals over a broad range of methodological variation (vol 43, pg 1127, 2024)
ONCOGENE
IF7.3
2024-04-050
OAAI
Sepich-Poore, Gregory D.; McDonald, Daniel; Kopylova, Evguenia; Guccione, Caitlin; Zhu, Qiyun; Austin, George; Carpenter, Carolina; Fraraccio, Serena; Wandro, Stephen; Kosciolek, Tomasz; Janssen, Stefan; Metcalf, Jessica L.; Song, Se Jin; Kanbar, Jad; Miller-Montgomery, Sandrine; Heaton, Robert; Mckay, Rana; Patel, Sandip Pravin; Swafford, Austin D.; Korem, Tal; Knight, Rob
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort (vol 54, pg 134, 2022)
NATURE GENETICS
IF31.8
2024-02-293
OA
Qin, Youwen; Havulinna, Aki S.; Liu, Yang; Jousilahti, Pekka; Ritchie, Scott C.; Tokolyi, Alex; Sanders, Jon G.; Valsta, Liisa; Brozynska, Marta; Zhu, Qiyun; Tripathi, Anupriya; Vazquez-Baeza, Yoshiki; Loomba, Rohit; Cheng, Susan; Jain, Mohit; Niiranen, Teemu; Lahti, Leo; Knight, Rob; Salomaa, Veikko; Inouye, Michael; Meric, Guillaume
Robustness of cancer microbiome signals over a broad range of methodological variation

癌症微生物组信号在广泛的方法学变化范围内的稳健性

ONCOGENE
IF7.3
2024-02-235
OAAI
Sepich-Poore, Gregory D.; Mcdonald, Daniel; Kopylova, Evguenia; Guccione, Caitlin; Zhu, Qiyun; Austin, George; Carpenter, Carolina; Fraraccio, Serena; Wandro, Stephen; Kosciolek, Tomasz; Janssen, Stefan; Metcalf, Jessica L.; Song, Se Jin; Kanbar, Jad; Miller-Montgomery, Sandrine; Heaton, Robert; Mckay, Rana; Patel, Sandip Pravin; Swafford, Austin D.; Korem, Tal; Knight, Rob
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables
Nature Microbiology
IF19.4
2024-02-120
OAAI
Zachary M. Burcham; Aeriel D. Belk; Bridget B. McGivern; Amina Bouslimani; Parsa Ghadermazi; Cameron Martino; Liat Shenhav; Anru R. Zhang; Pixu Shi; Alexandra Emmons; Heather L. Deel; Zhenjiang Zech Xu; Victoria Nieciecki; Qiyun Zhu; Michael Shaffer; Morgan Panitchpakdi; Kelly C. Weldon; Kalen Cantrell; Asa Ben-Hur; Sasha C. Reed; Greg C. Humphry; Gail Ackermann; Daniel McDonald; Siu Hung Joshua Chan; Melissa Connor; Derek Boyd; Jake Smith; Jenna M. S. Watson; Giovanna Vidoli; Dawnie Steadman; Aaron M. Lynne; Sibyl Bucheli; Pieter C. Dorrestein; Kelly C. Wrighton; David O. Carter; Rob Knight; Jessica L. Metcalf

研究方向

computational microbiomicsmicrobiome data analyticshost and environmental microbiomes and their influevolution of microbes and their hostsvertical and horizontal genetic connections betwee
R
Rob Knight
H 指数:255论文数:1,814被引数:46.5万
D
Daniel McDonald
H 指数:73论文数:319被引数:10.9万
Y
Yoshiki Vázquez‐Baeza
H 指数:54论文数:136被引数:6.2万
P
Pieter C. Dorrestein
H 指数:122论文数:885被引数:8.9万
A
Austin D. Swafford
H 指数:39论文数:106被引数:3.4万
J
Jon G. Sanders
H 指数:49论文数:168被引数:1.9万
A
Anupriya Tripathi
H 指数:34论文数:83被引数:3.8万
A
Antonio González
H 指数:52论文数:159被引数:5.3万
S
Se Jin Song
H 指数:51论文数:122被引数:4.5万
徐
徐振江
H 指数:52论文数:155被引数:4.7万