Timothy D. Read - Publications, H-index & Citations

Timothy D. Read

emory university

60H指数

295论文数

1.9W被引数

收录论文 109

发表时间

Phylogenetic diversity, functional pathways, and network interactions of ocular chlamydia-like organisms (CLOs) in trachoma-endemic Ethiopia 眼结膜沙眼衣原体样生物（CLOs）的系统发育多样性、功能通路和网络相互作用：以衣原体流行区埃塞俄比亚为例

mBio

IF4.7

2026-05-13

PREAI

Olagoke, Olusola; Zheng, Xinhe; Chung, Seongwon; Mengistie, Hiwot Degineh; Asfaha, Kaleb; Read, Timothy D.; Dean, Deborah

camlhmp: a simple framework for building reproducible microbial genome-based typing tools camlhmp：一种构建可重复微生物基因组分型工具的简单框架

Microbiology Resource Announcements

IF0.6

2026-05-07

PREAI

Petit, Robert A.; Rowley, Chayse M.; Fearing, Taylor R.; Verwimp, Stefaan; Christensen, Rob G.; Mildenberger, Jim A.; Reed, Joseph M.; Read, Timothy D.

Characterizing Oral Microbiome and Periodontal Disease in Oral HPV-Positive (COMP-HPV) individuals with HIV: an observational longitudinal study protocol 在HIV感染者中表征口腔微生物组与牙周疾病关系的口腔HPV阳性（COMP-HPV）观察性纵向研究方案

BMC Oral Health

IF3.1

2026-04-14

OAAI

Sohan Rodney Bangera; Raju Subbiah; Sakthivel Govindaraj; Chris Ibegbu; David Reznik; Timothy D. Read; Terryl J. Hartman; Sudeshna Paul; Natalia Torres–Patarroyo; Kadera Jana Lymon; Nichole Alicia Ciers-Davis; Minh Ly Nguyen; Deborah W. Bruner; Lisa Flowers; Vijayakumar Velu; Canhua Xiao

Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections 阿奇霉素改变了沙眼衣原体感染女性中的微生物群组成、功能及耐药组。

npj Biofilms and Microbiomes

IF9.2

2025-12-13

OAAI

Sankhya Bommana; Olusola Olagoke; Yi-Juan Hu; Ruohong Wang; Mike Kama; Morgan Dehdashti; Reshma Kodimerla; Timothy D. Read; Deborah Dean

Staphylococcus aureus induces Gasdermin A-dependent keratinocyte pyroptosis 金黄色葡萄球菌诱导Gasdermin A依赖性的角质形成细胞焦亡

Nature Communications

IF15.7

2025-11-26

OAAI

Doris L. LaRock; Jacob D. Sherman; Claire Qu; William Ngai; Timothy D. Read; Martin J. McGavin; Christopher N. LaRock

Using wastewater surveillance to investigate community-level differences in antibacterial resistance in a major urban center, USA 使用废水监测来调查美国主要城市中心社区一级抗菌素耐药性的差异

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2025-10-01

PREAI

Goetgeluck, Cameron; Olojo, Oluwatosin; Hilton, Stephen P.; Sablon III, Orlando; Freeman, Lorenzo; Person, Patrick; Clark, David; Lyles, Robert H.; Read, Timothy D.; Sheikhzadeh, Caroline; Wolfe, Marlene K.; Nadimpalli, Maya L.

Integrative Analysis of Microbial 16S Gene and Shotgun Metagenomic Sequencing Data Improves Statistical Efficiency in Testing Differential Abundance 整合微生物16S基因和宏基因组 shotgun 测序数据分析可提高差异丰度检验的统计效率

Journal of the American Statistical Association

IF3

2025-08-05

PREAI

Ye Yue; Yicong Mao; Timothy D. Read; Veronika Fedirko; Glen A. Satten; Xuan Chen; Xiang Zhan; Yi-Juan Hu

Methicillin-Resistant Staphylococcus aureus Bacteremia Relapses Show Diverse Genomic Profiles but Convergence in Bacteremia-Associated Genes 耐甲氧西林金黄色葡萄球菌菌血症复发病例显示基因组谱系多样，但在菌血症相关基因上存在趋同。

JOURNAL OF INFECTIOUS DISEASES

IF4.5

2025-07-01

PREAI

Talbot, Brooke M.; Jacko, Natasia F.; Hofstetter, Katrina S.; Alahakoon, Tara; Bouiller, Kevin; Read, Timothy D.; David, Michael Z.

Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline 使用集成的CtGAP管道从参考，体外和临床样品中提取沙眼衣原体菌株的全基因组自动组装管道

genomics proteomics bioinformatics

IF2.8

2025-01-07

OAAI

Olagoke, Olusola; Aziz, Ammar; Zhu, Lucile H.; Read, Timothy D.; Dean, Deborah

A laboratory-based predictive pathway for the development of Neisseria gonorrhoeae high-level resistance to corallopyronin A, an inhibitor of bacterial RNA polymerase (vol 12, pg e00560, 2024)一种基于实验室的预测途径，用于发展淋病奈瑟菌对细菌RNA聚合酶抑制剂corallopyronin A的高水平抗性 (vol 12，pg e00560，2024)

MICROBIOLOGY SPECTRUM

IF3.8

2024-08-06

OAAI

Balthazar, Jacqueline T.; Golparian, Daniel; Unemo, Magnus; Read, Timothy D.; Grosse, Miriam; Stadler, Marc; Pfarr, Kenneth; Schiefer, Andrea; Hoerauf, Achim; Edwards, Jennifer L.; Vassylyev, Dmitry G.; Shafer, William M.

Chlamydia suis undergoes interclade recombination promoting Tet-island exchange 衣原体经历了进化枝间重组，促进了Tet岛交换

BMC GENOMICS

IF3.7

2024-07-26

OAAI

Seth-Smith, Helena; Bommana, Sankhya; Dean, Deborah; Read, Timothy D.; Marti, Hanna

Genomic insights into the evolution of secondary metabolism of Escovopsis and its allies, specialized fungal symbionts of fungus-farming ants 对Escovopsis及其盟友的次生代谢进化的基因组见解，真菌养殖蚂蚁的特殊真菌共生体

MSYSTEMS

IF4.6

2024-07-23

OAAI

Berasategui, Aileen; Salem, Hassan; Moller, Abraham G.; Christopher, Yuliana; Vidaurre Montoya, Quimi; Conn, Caitlin; Read, Timothy D.; Rodrigues, Andre; Ziemert, Nadine; Gerardo, Nicole

Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome 基于平均核苷酸身份的金黄色葡萄球菌菌株分组可以鉴定pangenome中的菌株特异性基因

MSYSTEMS

IF4.6

2024-07-23

OAAI

Raghuram, Vishnu; Petit, Robert A.; Karol, Zach; Mehta, Rohan; Weissman, Daniel B.; Read, Timothy D.

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis (vol 14, 1154664, 2023)

FRONTIERS IN MICROBIOLOGY

IF4.5

2024-06-25

OAAI

Joseph, Sandeep J.; Bommana, Sankhya; Ziklo, Noa; Kama, Mike; Dean, Deborah; Read, Timothy D.

A laboratory-based predictive pathway for the development of Neisseria gonorrhoeae high-level resistance to corallopyronin A, an inhibitor of bacterial RNA polymerase 基于实验室的预测途径，用于发展淋病奈瑟菌对细菌RNA聚合酶抑制剂corallopyronin A的高水平抗性

MICROBIOLOGY SPECTRUM

IF3.8

2024-06-04

OAAI

Strain Differences in Bloodstream and Skin Infection: Methicillin-Resistant Staphylococcus aureus Isolated in 2018-2021 in a Single Health System 血液和皮肤感染的菌株差异: 2018中分离出的耐甲氧西林金黄色葡萄球菌-单一卫生系统中的2021

OPEN FORUM INFECTIOUS DISEASES

IF3.8

2024-05-06

OAAI

Hofstetter, Katrina S.; Jacko, Natasia F.; Shumaker, Margot J.; Talbot, Brooke M.; Petit III, Robert A.; Read, Timothy D.; David, Michael Z.

Incomplete immunity in a natural animal-microbiota interaction selects for higher pathogen virulence

CURRENT BIOLOGY

IF7.5

2024-03-01

OAAI

Hoang, Kim L.; Read, Timothy D.; King, Kayla C.

Factors associated with foreign body infection in methicillin-resistant Staphylococcus aureus bacteremia 耐甲氧西林金黄色葡萄球菌菌血症异物感染的相关因素

FRONTIERS IN IMMUNOLOGY

IF5.9

2024-02-16

OAAI

Bouiller, Kevin; Jacko, Natasia F.; Shumaker, Margot J.; Talbot, Brooke M.; Read, Timothy D.; David, Michael Z.

The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection 高突变和侧支敏感性在囊性纤维化肺部感染中铜绿假单胞菌群体耐药性多样性中的作用

MBIO

IF4.7

2024-02-14

OAAI

Vanderwoude, Jelly; Azimi, Sheyda; Read, Timothy D.; Diggle, Stephen P.

The Burden and Impact of Early Post-transplant Multidrug-Resistant Organism Detection Among Renal Transplant Recipients, 2005-2021 肾移植受者移植后早期多药耐药菌检测的负担和影响，2005-2021

OPEN FORUM INFECTIOUS DISEASES

IF3.8

2024-02-13

OAAI

Babiker, Ahmed; Karadkhele, Geeta; Bombin, Andrei; Watkins, Rockford; Robichaux, Chad; Smith, Gillian; Beechar, Vivek B.; Steed, Danielle B.; Jacobs, Jesse T.; Read, Timothy D.; Satola, Sarah; Larsen, Christian P.; Kraft, Colleen S.; Pouch, Stephanie M.; Woodworth, Michael H.

研究方向