Malte D. Luecken - Publications, H-index & Citations

Malte D. Luecken

university of technology sydney

25H指数

68论文数

7.3K被引数

收录论文 28

发表时间

Author Correction: Single-cell atlas of the transcriptome and chromatin accessibility in the human retina 作者更正：人类视网膜中转录组和染色质可及性的单细胞图谱

Nature Genetics

IF29

2026-02-18

PREAI

Jin Li; Jun Wang; Ignacio L. Ibarra; Xuesen Cheng; Malte D. Luecken; Jiaxiong Lu; Aboozar Monavarfeshani; Wenjun Yan; Yiqiao Zheng; Zhen Zuo; Samantha Lynn Zayas Colborn; Berenice Sarahi Cortez; Leah A. Owen; Brittney Wick; Xuan Bao; Jongsu Choi; Maximilian Haeussler; Nicholas M. Tran; Karthik Shekhar; Joshua R. Sanes; J. Timothy Stout; Shiming Chen; Yumei Li; Margaret M. DeAngelis; Fabian J. Theis; Rui Chen

Toward informed batch correction for single-cell transcriptome integration 面向单细胞转录组整合的知情批次校正

Nature Computational Science

IF18.3

2026-02-16

PREAI

Shuang Li; Malte Lücken; John C. Marioni; Sarah A. Teichmann; Peng He

Single-cell atlas of the transcriptome and chromatin accessibility in the human retina 人类视网膜中转录组和染色质可及性的单细胞图谱

Nature Genetics

IF29

2026-01-23

PREAI

Jin Li; Jun Wang; Ignacio L. Ibarra; Xuesen Cheng; Malte D. Luecken; Jiaxiong Lu; Aboozar Monavarfeshani; Wenjun Yan; Yiqiao Zheng; Zhen Zuo; Samantha Lynn Zayas Colborn; Berenice Sarahi Cortez; Leah A. Owen; Brittney Wick; Xuan Bao; Maximilian Haeussler; Nicholas M. Tran; Karthik Shekhar; Joshua R. Sanes; J. Timothy Stout; Shiming Chen; Yumei Li; Margaret M. DeAngelis; Fabian J. Theis; Rui Chen

Single-cell characterization of the adult male hippocampus suggests a prominent, and cell-type specific, role for Nrgn and Sgk1 in response to a social stressor 成年男性海马的单细胞特征表明，Nrgn和Sgk1在应对社会压力方面具有突出的细胞类型特异性作用。

Molecular Psychiatry

IF10.1

2026-01-19

OAAI

Carlo De Donno; Juan Pablo Lopez; Malte D. Luecken; Aron Kos; Elena Brivio; Joeri Bordes; Huanqing Yang; Jan M. Deussing; Mathias V. Schmidt; Fabian J. Theis; Alon Chen

Multi-omics to study chronic respiratory diseases and viral infections 多组学方法研究慢性呼吸道疾病和病毒感染

European Respiratory Review

IF10.4

2026-01-01

PREAI

Idrees, Sobia; Chen, Hao; Sadaf, Tayyaba; Rehman, Saima Firdous; Johansen, Matt D.; Paudel, Keshav Raj; Liu, Gang; Wang, Yuting; Luecken, Malte D.; Hortle, Elinor; Philp, Ashleigh S.; Budden, Kurtis F.; O'rourke, Matthew; Kaiko, Gerard E.; Lucas, Sionne E. M.; Dickinson, Joanne L.; Allen, Peter C.; Powell, Joseph E.; Zhang, Lai-Ying; Chambers, Daniel C.; Corte, Tamera; Caramori, Gaetano; Sauler, Maor; Wark, Peter A.; Gote-Schniering, Janine; Lehmann, Mareike; Conlon, Thomas M.; Kapellos, Theodore S.; Yildirim, Ali Onder; Faner, Rosa; Dharmage, Shyamali C.; Wheelock, Craig E.; Van Den Berge, Maarten; Nawijn, Martijn C.; Polverino, Francesca; Belz, Gabrielle T.; Chotirmall, Sanjay H.; Segal, Leopoldo N.; Faiz, Alen; Hansbro, Philip M.

Spatial single-cell atlas reveals regional variations in healthy and diseased human lung 空间单细胞图谱揭示了健康与患病人类肺部的区域性差异

Nature Communications

IF15.7

2025-11-05

OAAI

Alexandra B. Firsova; Sergio Marco Salas; Louis B. Kuemmerle; Xesús M. Abalo; Alexandros Sountoulidis; Ludvig Larsson; Krishnaa T. Mahbubani; Jonas Theelke; Zaneta Andrusivova; Leire Alonso Galicia; Andreas Liontos; Tamás Balassa; Ferenc Kovacs; Peter Horvath; Yuexin Chen; Janine Gote-Schniering; Mircea-Gabriel Stoleriu; Jürgen Behr; Kerstin B. Meyer; Wim Timens; Herbert B. Schiller; Malte D. Luecken; Fabian J. Theis; Joakim Lundeberg; Mats Nilsson; Martijn C. Nawijn; Christos Samakovlis

Defining and benchmarking open problems in single-cell analysis 在单细胞分析中定义和基准测试开放问题

Nature Biotechnology

IF41.7

2025-07-01

OAAI

Malte D. Luecken; Scott Gigante; Daniel B. Burkhardt; Robrecht Cannoodt; Daniel C. Strobl; Nikolay S. Markov; Luke Zappia; Giovanni Palla; Wesley Lewis; Daniel Dimitrov; Michael E. Vinyard; D. S. Magruder; Michaela F. Mueller; Alma Andersson; Emma Dann; Qian Qin; Dominik J. Otto; Michal Klein; Olga Borisovna Botvinnik; Louise Deconinck; Kai Waldrant; Sai Nirmayi Yasa; Artur Szałata; Andrew Benz; Zhijian Li; Jonathan M. Bloom; Angela Oliveira Pisco; Julio Saez-Rodriguez; Drausin Wulsin; Luca Pinello; Yvan Saeys; Fabian J. Theis; Smita Krishnaswamy

Feature selection methods affect the performance of scRNA-seq data integration and querying 特征选择方法影响scRNA-seq数据整合与查询的性能

Nature Methods

IF32.1

2025-03-13

OAAI

Luke Zappia; Sabrina Richter; Ciro Ramírez-Suástegui; Raphael Kfuri-Rubens; Larsen Vornholz; Weixu Wang; Oliver Dietrich; Amit Frishberg; Malte D. Luecken; Fabian J. Theis

Biases in machine-learning models of human single-cell data 人类单细胞数据机器学习模型中的偏差

NATURE CELL BIOLOGY

IF19.1

2025-02-19

PREAI

Willem, Theresa; Shitov, Vladimir A.; Luecken, Malte D.; Kilbertus, Niki; Bauer, Stefan; Piraud, Marie; Buyx, Alena

Considerations for building and using integrated single-cell atlases

NATURE METHODS

IF32.1

2024-12-13

PREAI

Hrovatin, Karin; Sikkema, Lisa; Shitov, Vladimir A.; Heimberg, Graham; Shulman, Maiia; Oliver, Amanda J.; Mueller, Michaela F.; Ibarra, Ignacio L.; Wang, Hanchen; Ramirez-Suastegui, Ciro; He, Peng; Schaar, Anna C.; Teichmann, Sarah A.; Theis, Fabian J.; Luecken, Malte D.

Heterogeneity-driven phenotypic plasticity and treatment response in branched-organoid models of pancreatic ductal adenocarcinoma

NATURE BIOMEDICAL ENGINEERING

IF26.6

2024-12-10

OAAI

Papargyriou, Aristeidis; Najajreh, Mulham; Cook, David P.; Maurer, Carlo H.; Baerthel, Stefanie; Messal, Hendrik A.; Ravichandran, Sakthi K.; Richter, Till; Knolle, Moritz; Metzler, Thomas; Shastri, Akul R.; Oellinger, Rupert; Jasper, Jacob; Schmidleitner, Laura; Wang, Surui; Schneeweis, Christian; Ishikawa-Ankerhold, Hellen; Engleitner, Thomas; Mataite, Laura; Semina, Mariia; Trabulssi, Hussein; Lange, Sebastian; Ravichandra, Aashreya; Schuster, Maximilian; Mueller, Sebastian; Peschke, Katja; Schaefer, Arlett; Dobiasch, Sophie; Combs, Stephanie E.; Schmid, Roland M.; Bausch, Andreas R.; Braren, Rickmer; Heid, Irina; Scheel, Christina H.; Schneider, Guenter; Zeigerer, Anja; Luecken, Malte D.; Steiger, Katja; Kaissis, Georgios; van Rheenen, Jacco; Theis, Fabian J.; Saur, Dieter; Rad, Roland; Reichert, Maximilian

Probe set selection for targeted spatial transcriptomics 靶向空间转录组学的探针集选择

NATURE METHODS

IF32.1

2024-11-18

OAAI

Kuemmerle, Louis B.; Luecken, Malte D.; Firsova, Alexandra B.; Andrade e Sousa, Lisa Barros de; Strasser, Lena; Mekki, Ilhem Isra; Campi, Francesco; Heumos, Lukas; Shulman, Maiia; Beliaeva, Valentina; Hediyeh-Zadeh, Soroor; Schaar, Anna C.; Mahbubani, Krishnaa T.; Sountoulidis, Alexandros; Balassa, Tamas; Kovacs, Ferenc; Horvath, Peter; Piraud, Marie; Erturk, Ali; Samakovlis, Christos; Theis, Fabian J.

LSC-2024-Deciphering the spatial heterogeneity of interstitial lung disease by integrative radiomics and single-nucleus transcriptomics

EUROPEAN RESPIRATORY JOURNAL

IF21

2024-10-30

PREAI

Ammeter, Michael; Chen, Yuexin; Mueller, Michaela; Zhou, Shuhong; De Sadeleer, Laurens J.; Brunner, Matthias; Distler, Oliver; Gabrys, Hubert S.; Tanadini-Lang, Stephanie; Luecken, Malte D.; Verleden, Stijn; Maurer, Britta; Schiller, Herbert B.; Gote-Schniering, Janine

Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis

SCIENCE TRANSLATIONAL MEDICINE

IF14.6

2023-12-06

OAAI

Lang, Niklas J.; Gote-Schniering, Janine; Porras-Gonzalez, Diana; Yang, Lin; De Sadeleer, Laurens J.; Jentzsch, R. Christoph; Shitov, Vladimir A.; Zhou, Shuhong; Ansari, Meshal; Agami, Ahmed; Mayr, Christoph H.; Hooshiar Kashani, Baharak; Chen, Yuexin; Heumos, Lukas; Pestoni, Jeanine C.; Molnar, Eszter Sarolta; Geeraerts, Emiel; Anquetil, Vincent; Saniere, Laurent; Woegrath, Melanie; Gerckens, Michael; Lehmann, Mareike; Yildirim, Ali Onder; Hatz, Rudolf; Kneidinger, Nikolaus; Behr, Juergen; Wuyts, Wim A.; Stoleriu, Mircea-Gabriel; Luecken, Malte D.; Theis, Fabian J.; Burgstaller, Gerald; Schiller, Herbert B.

Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus

SCIENCE ADVANCES

IF12.5

2023-12-01

OAAI

Kos, Aron; Lopez, Juan Pablo; Bordes, Joeri; de Donno, Carlo; Dine, Julien; Brivio, Elena; Karamihalev, Stoyo; Luecken, Malte D.; Almeida-Correa, Suellen; Gasperoni, Serena; Dick, Alec; Miranda, Lucas; Buettner, Maren; Stoffel, Rainer; Flachskamm, Cornelia; Theis, Fabian J.; Schmidt, Mathias V.; Chen, Alon

Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multi-lineage cell circuit dynamics in human lung fibrogenesis

EUROPEAN RESPIRATORY JOURNAL

IF21

2023-10-27

OAAI

Lang, Niklas Jonathan; Gote-Schniering, Janine; Porras-Gonzalez, Diana; Yang, Lin; De Sadeleer, Laurens J.; Jentzsch, R. Christoph; Shitov, Vladimir A.; Zhou, Shuhong; Ansari, Meshal; Agami, Ahmed; Mayr, Christoph H.; Kashani, Baharak Hooshiar; Chen, Yuexin; Heumos, Lukas; Pestoni, Jeanine C.; Geeraerts, Emil; Anquetil, Vincent; Saniere, Laurent; Woegrath, Melanie; Gerckens, Michael; Hatz, Rudolf; Kneidinger, Nikolaus; Behr, Juergen; Wuyts, Wim A.; Stoleriu, Mircea-Gabriel; Luecken, Malte D.; Theis, Fabian J.; Burgstaller, Gerald; Schiller, Herbert. B.

A Roadmap for a Consensus Human Skin Cell Atlas and Single-Cell Data Standardization

JOURNAL OF INVESTIGATIVE DERMATOLOGY

IF5.7

2023-09-01

OAAI

Almet, Axel A.; Yuan, Hao; Annusver, Karl; Ramos, Raul; Liu, Yingzi; Wiedemann, Julie; Sorkin, Dara H.; Landen, Ning Xu; Sonkoly, Eniko; Haniffa, Muzlifah; Nie, Qing; Lichtenberger, Beate M.; Luecken, Malte D.; Andersen, Bogi; Tsoi, Lam C.; Watt, Fiona M.; Gudjonsson, Johann E.; Plikus, Maksim, V; Kasper, Maria

An integrated cell atlas of the lung in health and disease 健康和疾病中肺的综合细胞图谱

NATURE MEDICINE

IF50

2023-06-08

163

OAAI

Sikkema, Lisa; Ramirez-Suastegui, Ciro; Strobl, Daniel C.; Gillett, Tessa E.; Zappia, Luke; Madissoon, Elo; Markov, Nikolay S.; Zaragosi, Laure-Emmanuelle; Ji, Yuge; Ansari, Meshal; Arguel, Marie-Jeanne; Apperloo, Leonie; Banchero, Martin; Becavin, Christophe; Berg, Marijn; Chichelnitskiy, Evgeny; Chung, Mei-i; Collin, Antoine; Gay, Aurore C. A.; Gote-Schniering, Janine; Kashani, Baharak Hooshiar; Inecik, Kemal; Jain, Manu; Kapellos, Theodore S.; Kole, Tessa M.; Leroy, Sylvie; Mayr, Christoph H.; Oliver, Amanda J.; von Papen, Michael; Peter, Lance; Taylor, Chase J.; Walzthoeni, Thomas; Xu, Chuan; Bui, Linh T.; De Donno, Carlo; Dony, Leander; Faiz, Alen; Guo, Minzhe; Gutierrez, Austin J.; Heumos, Lukas; Huang, Ni; Ibarra, Ignacio L.; Jackson, Nathan D.; Murthy, Preetish Kadur Lakshminarasimha; Lotfollahi, Mohammad; Tabib, Tracy; Talavera-Lopez, Carlos; Travaglini, Kyle J.; Wilbrey-Clark, Anna; Worlock, Kaylee B.; Yoshida, Masahiro; van den Berge, Maarten; Bosse, Yohan; Desai, Tushar J.; Eickelberg, Oliver; Kaminski, Naftali; Krasnow, Mark A.; Lafyatis, Robert; Nikolic, Marko Z.; Powell, Joseph E.; Rajagopal, Jayaraj; Rojas, Mauricio; Rozenblatt-Rosen, Orit; Seibold, Max A.; Sheppard, Dean; Shepherd, Douglas P.; Sin, Don D.; Timens, Wim; Tsankov, Alexander M.; Whitsett, Jeffrey; Xu, Yan; Banovich, Nicholas E.; Barbry, Pascal; Duong, Thu Elizabeth; Falk, Christine S.; Meyer, Kerstin B.; Kropski, Jonathan A.; Pe'er, Dana; Schiller, Herbert B.; Tata, Purushothama Rao; Schultze, Joachim L.; Teichmann, Sara A.; Misharin, Alexander, V; Nawijn, Martijn C.; Luecken, Malte D.; Theis, Fabian J.; Chen, Yuexin; Hagood, James S.; Agami, Ahmed; Horvath, Peter; Lundeberg, Joakim; Marquette, Charles-Hugo; Pryhuber, Gloria; Samakovlis, Chistos; Sun, Xin; Ware, Lorraine B.; Zhang, Kun

Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy 癌细胞中STING信号的综合实施使免疫微环境适合检查点抑制剂治疗

SCIENCE ADVANCES

IF12.5

2023-03-17

OAAI

Vornholz, Larsen; Isay, Sophie E.; Kurgyis, Zsuzsanna; Strobl, Daniel C.; Loll, Patricia; Mosa, Mohammed H.; Luecken, Malte D.; Sterr, Michael; Lickert, Heiko; Winter, Christof; Greten, Florian R.; Farin, Henner F.; Theis, Fabian J.; Ruland, Juergen

Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease

NATURE COMMUNICATIONS

IF15.7

2022-08-16

OAAI

Schmidt, Sebastian; Luecken, Malte D.; Truembach, Dietrich; Hembach, Sina; Niedermeier, Kristina M.; Wenck, Nicole; Pfluegler, Klaus; Stautner, Constantin; Boettcher, Anika; Lickert, Heiko; Ramirez-Suastegui, Ciro; Ahmad, Ruhel; Ziller, Michael J.; Fitzgerald, Julia C.; Ruf, Viktoria; van de Berg, Wilma D. J.; Jonker, Allert J.; Gasser, Thomas; Winner, Beate; Winkler, Juergen; Weisenhorn, Daniela M. Vogt; Giesert, Florian; Theis, Fabian J.; Wurst, Wolfgang

研究方向