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Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma 免疫检查点阻断治疗的晚期黑色素瘤的纵向肠道微生物组变化 Bjork, Johannes R.; Bolte, Laura A.; Thomas, Andrew Maltez; Lee, Karla A.; Rossi, Niccolo; Wind, Thijs T.; Smit, Lotte M.; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M.; Tamburini, Sabrina; Valpione, Sara; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G. E.; Nathan, Paul; Fehrmann, Rudolf S. N.; Spector, Tim D.; Bataille, Veronique; Segata, Nicola; Hospers, Geke A. P.; Weersma, Rinse K. 分享 收藏
MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice 未知物种水平基因组的metaplan 4分析可改善小鼠饮食相关微生物组变化的特征 Manghi, Paolo; Blanco-Miguez, Aitor; Manara, Serena; NabiNejad, Amir; Cumbo, Fabio; Beghini, Francesco; Armanini, Federica; Golzato, Davide; Huang, Kun D.; Thomas, Andrew M.; Piccinno, Gianmarco; Puncochar, Michal; Zolfo, Moreno; Lesker, Till R.; Bredon, Marius; Planchais, Julien; Glodt, Jeremy; Valles-Colomer, Mireia; Koren, Omry; Pasolli, Edoardo; Asnicar, Francesco; Strowig, Till; Sokol, Harry; Segata, Nicola 分享 收藏
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 使用methaplan 4扩展和改善未表征物种的宏基因组分类学概况 Blanco-Miguez, Aitor; Beghini, Francesco; Cumbo, Fabio; McIver, Lauren J.; Thompson, Kelsey N.; Zolfo, Moreno; Manghi, Paolo; Dubois, Leonard; Huang, Kun D.; Thomas, Andrew Maltez; Nickols, William A.; Piccinno, Gianmarco; Piperni, Elisa; Puncochar, Michal; Valles-Colomer, Mireia; Tett, Adrian; Giordano, Francesca; Davies, Richard; Wolf, Jonathan; Berry, Sarah E.; Spector, Tim D.; Franzosa, Eric A.; Pasolli, Edoardo; Asnicar, Francesco; Huttenhower, Curtis; Segata, Nicola 分享 收藏
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Automated identification of sequence-tailored Cas9 proteins using massive metagenomic data Ciciani, Matteo; Demozzi, Michele; Pedrazzoli, Eleonora; Visentin, Elisabetta; Pezze, Laura; Signorini, Lorenzo Federico; Blanco-Miguez, Aitor; Zolfo, Moreno; Asnicar, Francesco; Casini, Antonio; Cereseto, Anna; Segata, Nicola 分享 收藏
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma 跨队列肠道菌群与晚期黑色素瘤免疫检查点抑制剂反应的关联 Lee, Karla A.; Thomas, Andrew Maltez; Bolte, Laura A.; Bjork, Johannes R.; de Ruijter, Laura Kist; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Leeming, Emily R.; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M.; Tamburini, Sabrina; Valpione, Sara; Vijay, Amrita; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G. E.; Nathan, Paul; Fehrmann, Rudolf S. N.; Bataille, Veronique; Hospers, Geke A. P.; Spector, Tim D.; Weersma, Rinse K.; Segata, Nicola 分享 收藏
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly Karcher, Nicolai; Nigro, Eleonora; Puncochar, Michal; Blanco-Miguez, Aitor; Ciciani, Matteo; Manghi, Paolo; Zolfo, Moreno; Cumbo, Fabio; Manara, Serena; Golzato, Davide; Cereseto, Anna; Arumugam, Manimozhiyan; Bui, Thi Phuong Nam; Tytgat, Hanne L. P.; Valles-Colomer, Mireia; de Vos, Willem M.; Segata, Nicola 分享 收藏
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 将各种微生物群落的分类学，功能和菌株水平的分析与bioBakery 3相结合 Beghini, Francesco; McIver, Lauren J.; Blanco-Miguez, Aitor; Dubois, Leonard; Asnicar, Francesco; Maharjan, Sagun; Mailyan, Ana; Manghi, Paolo; Scholz, Matthias; Thomas, Andrew Maltez; Valles-Colomer, Mireia; Weingart, George; Zhang, Yancong; Zolfo, Moreno; Huttenhower, Curtis; Franzosa, Eric A.; Segata, Nicola 分享 收藏
Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics Ghensi, Paolo; Manghi, Paolo; Zolfo, Moreno; Armanini, Federica; Pasolli, Edoardo; Bolzan, Mattia; Bertelle, Alberto; Dell'Acqua, Federico; Dellasega, Ester; Waldner, Romina; Tessarolo, Francesco; Tomasi, Cristiano; Segata, Nicola 分享 收藏
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations 来自宏基因组的1321个大肠杆菌基因组的分析揭示了复杂的系统地理种群结构和亚种功能适应 Karcher, Nicolai; Pasolli, Edoardo; Asnicar, Francesco; Huang, Kun D.; Tett, Adrian; Manara, Serena; Armanini, Federica; Bain, Debbie; Duncan, Sylvia H.; Louis, Petra; Zolfo, Moreno; Manghi, Paolo; Valles-Colomer, Mireia; Raffaeta, Roberta; Rota-Stabelli, Omar; Carmen Collado, Maria; Zeller, Georg; Falush, Daniel; Maixner, Frank; Walker, Alan W.; Huttenhower, Curtis; Segata, Nicola 分享 收藏
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 Asnicar, Francesco; Thomas, Andrew Maltez; Beghini, Francesco; Mengoni, Claudia; Manara, Serena; Manghi, Paolo; Zhu, Qiyun; Bolzan, Mattia; Cumbo, Fabio; May, Uyen; Sanders, Jon G.; Zolfo, Moreno; Kopylova, Evguenia; Pasolli, Edoardo; Knight, Rob; Mirarab, Siavash; Huttenhower, Curtis; Segata, Nicola 分享 收藏
Longitudinal survey of microbiome associated with particulate matter in a megacity Qin, Nan; Liang, Peng; Wu, Chunyan; Wang, Guanqun; Xu, Qian; Xiong, Xiao; Wang, Tingting; Zolfo, Moreno; Segata, Nicola; Qin, Huanlong; Knight, Rob; Gilbert, Jack A.; Zhu, Ting F. 分享 收藏
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species 来自非人灵长类动物肠道元基因组的微生物基因组通过1000多种新物种扩展了灵长类动物相关的细菌生命之树 Manara, Serena; Asnicar, Francesco; Beghini, Francesco; Bazzani, Davide; Cumbo, Fabio; Zolfo, Moreno; Nigro, Eleonora; Karcher, Nicolai; Manghi, Paolo; Metzger, Marisa Isabell; Pasolli, Edoardo; Segata, Nicola 分享 收藏
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Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation (vol 25, pg 667, 2019) 结直肠癌数据集的宏基因组分析确定了跨队列微生物诊断特征以及与胆碱降解的联系 (第25卷，667页，2019页) Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M.; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, Joao Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola 分享 收藏
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation 结直肠癌数据集的宏基因组分析确定了跨队列微生物诊断特征以及与胆碱降解的联系 Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M.; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, Joao Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola 分享 收藏
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Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Armanini, Federica; Turroni, Francesca; James, Kieran; Ferretti, Pamela; Gorfer, Valentina; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Zolfo, Moreno; Viappiani, Alice; Pasolli, Edoardo; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifo, Tiziana; Cusumano, Giuseppina; Fedi, Sabina; Gottardi, Stefania; Innamorati, Claudia; Mase, Caterina; Postai, Daniela; Savoi, Daniela; Soffiati, Massimo; Tateo, Saverio; Pedrotti, Anna; Segata, Nicola; van Sinderen, Douwe; Ventura, Marco 分享 收藏
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