Alexander G. Lucaci - Publications, H-index & Citations

Alexander G. Lucaci

weill cornell medicine

16H指数

58论文数

3.7K被引数

收录论文 18

发表时间

Adaptive Response of Escherichia coli to Pexiganan: Insights from Genomic Analysis 大肠杆菌对培西加南的适应性反应：基因组分析见解

Antibiotics-Basel

IF4.6

2026-08-27

OAAI

Kübra Can Kurt; Liam F. Katzin; Landon Tamaddon; Ali Arslan; Alexander G. Lucaci; Christopher E. Mason

On the ancestry and evolution of the extinct dire wolf 关于已灭绝的恐狼的祖先及其演化

Cell Genomics

IF9

2026-07-27

OAAI

Gregory L. Gedman; Kathleen Morrill Pirovich; Jonas Oppenheimer; Chaz Hyseni; Molly Cassatt-Johnstone; Alexander G. Lucaci; Nicolas Alexandre; William Troy; J. Chris Chao; Olivier Fedrigo; Savannah J. Hoyt; Patrick G.S. Grady; Sam Sacco; William Seligmann; Ayusman Dash; Mithil Chokshi; Laura Knecht; James B. Papizan; Tyler Miyawaki; Sven Bocklandt

Diversity and distinctive characteristics of the global RNA virome in urban and peri-urban environments 城市和城郊环境中全球RNA病毒体的多样性和独特特征

Nature Communications

IF15.7

2026-07-16

OAAI

Zihao Gao; Jun Wu; Alexander G. Lucaci; Jian Ouyang; Lan Wang; Krista A. Ryon; Eran Elhaik; Alexander J. Probst; Xavier Rodó; Thirumalaisamy P. Velavan; Anastasia Chasapi; Christos A. Ouzounis; Manuela Oliveira; Emmanuel Dias-Neto; Olayinka Osuolale; Michael Poulsen; Dmitry Meleshko; Malay Bhattacharyya; Juan A. Ugalde; Alba Tull; Kathleen H. Rubins; Maria A. Sierra; Braden T. Tierney; Bharath Prithiviraj; Nitesh Kumar Sharma; Viorel Munteanu; Serghei Mangul; Kubra Can Kurt; Masayuki Ushio; Natalia Mazur-Panasiuk; Katarzyna Kopera; Kamila Marszałek; Michał Kowalski; Rodolfo Brizola Toscan; Wojciech Branicki; Krzysztof Pyrć; Paweł P. Łabaj; Balakrishnan Subramanian; Alina Frolova; Joshua G. Burkhart; Youping Deng; Klas I. Udekwu; Lynn M. Schriml; Nur Hazlin Hazrin-Chong; Haruo Suzuki; Patrick K. H. Lee; Antonio Pedro Camargo; Nikos C. Kyrpides; Di Liu; Lin-Fa Wang; Christopher E. Mason; Tieliu Shi

Towards a decentralized future for open-science databases 走向开放科学数据库的分散未来

Nature Genetics

IF29

2026-05-19

PREAI

Gaurav Sharma; Viorel Munteanu; Nika Mansouri Ghiasi; Utkarsha Mahanta; Jineta Banerjee; Susheel Varma; Luca Foschini; Kyle Ellrott; Onur Mutlu; Dumitru Ciorbă; Roel A. Ophoff; Viorel Bostan; Jason H. Moore; Despoina Sousoni; Arunkumar Krishnan; Alexander G. Lucaci; Alba Tull; Christopher E. Mason; Mihai Dimian; Gustavo Stolovitzky; Fabio G. Liberante; Taras K. Oleksyk; Serghei Mangul

CAMP: a modular metagenomics analysis system for integrated multistep data exploration CAMP：一种用于集成多步数据探索的模块化宏基因组分析系统

NAR Genomics and Bioinformatics

IF2.8

2026-03-01

PREAI

Mak, Lauren; Tierney, Braden; Wei, Wei; Ronkowski, Cynthia; Toscan, Rodolfo Brizola; Turhan, Berk; Toomey, Michael; Andrade-Martinez, Juan Sebastian; Fu, Chenlian; Lucaci, Alexander g; Solano, Arthur Henrique Barrios; Setubal, Joao Carlos; Henriksen, James r; Zimmerman, Sam; Kopbayeva, Malika; Noyvert, Anna; Iwan, Zana; Kar, Shraman; Nakazawa, Nikita; Meleshko, Dmitry; Horyslavets, Dmytro; Kantsypa, Valeriia; Frolova, Alina; Kahles, Andre; Danko, David; Elhaik, Eran; Labaj, Pawel; Mangul, Serghei; Mason, Christopher E.; Hajirasouliha, Iman

SARS-CoV-2 wastewater genomic surveillance: approaches, challenges, and opportunities SARS-CoV-2废水基因组监测: 方法、挑战和机遇

Genome Biology

IF9.4

2026-01-12

OAAI

Viorel Munteanu; Michael A. Saldana; David Dreifuss; Wenhao O. Ouyang; Jannatul Ferdous; Fatemeh Mohebbi; Jessica Schlueter Roseberry; Dumitru Ciorba; Viorel Bostan; Victor Gordeev; Nicolae Drabcinski; Justin Maine Su; Nadiia Kasianchuk; Nitesh Kumar Sharma; Sergey Knyazev; Eva Aßmann; Andrei Lobiuc; Mihai Covasa; Keith A. Crandall; Nicholas C. Wu; Christopher E. Mason; Braden T. Tierney; Alexander G. Lucaci; Roel A. Ophoff; Cynthia Gibas; Piotr Rzymski; Pavel Skums; Helena Solo-Gabriele; Beerenwinkel Niko; Alex Zelikovsky; Martin Hölzer; Adam Smith; Serghei Mangul

Proof-of-concept of host attribution of antimicrobial resistance genes using wastewater Hi-C metagenome sequencing 利用废水Hi-C宏基因组测序进行抗性基因宿主溯源的概念验证

Journal of Water and Health

IF2.4

2025-12-01

PREAI

Zhu, Kongyang; Amirali, Ayaaz; Auch, Benjamin; Babler, Kristina M.; Biswas, Pratim; Bowie, Kate; Choudhary, Shruti; Currall, Benjamin B.; Grills, George S.; Healy, Hannah G.; Liachko, Ivan; Lucaci, Alexander G.; Mason, Christopher E.; Sharkey, Mark; Shigeno Risse-Adams, Oona; Shukla, Bhavarth S.; Sisson, Zach; Stevenson, Mario; Williams, Sion L.; Zulli, Alessandro; Peccia, Jordan; Solo-Gabriele, Helena M.

Global biogeography of airborne viruses in public transit systems and their host interactions 公共交通系统中气传病毒的全球生物地理分布及其宿主相互作用

Microbiome

IF12.7

2025-08-30

OAAI

Huaxin Lei; Shicong Du; Xinzhao Tong; Wing Lam Chan; Marcus H. Y. Leung; Kari O. Bøifot; Daniela Bezdan; Daniel J. Butler; David C. Danko; David C. Green; Mark T. Hernandez; Frank J. Kelly; Alexander G. Lucaci; Cem Meydan; Marina Nieto-Caballero; Krista Ryon; Braden Tierney; Klas I. Udekwu; Benjamin G. Young; Christopher E. Mason; Marius Dybwad; Patrick K. H. Lee

Long term assessment of SARS-CoV-2 in wastewater and the transition to evaluate additional viral targets SARS-CoV-2废水中的长期评估及向评估其他病毒目标的转变

Science of The Total Environment

IF8

2025-07-24

PREAI

Ayaaz Amirali; Mark E. Sharkey; Shruti Choudhary; Kristina M. Babler; Cynthia C. Beaver; Pratim Biswas; Kate R. Bowie; Taylor Burke; Benjamin B. Currall; George S. Grills; Hannah G. Healy; Alexander G. Lucaci; Christopher E. Mason; Michaela McGuire; Rosemarie Ramos; Madelena Ruedaflores; Natasha Schaefer Solle; Stephan C. Schürer; Bhavarth S. Shukla; Mario Stevenson; Dušica Vidović; Sion L. Williams; Kongyang Zhu; Alessandro Zulli; Jordan Peccia; Helena M. Solo-Gabriele

Towards geospatially-resolved public-health surveillance via wastewater sequencing

NATURE COMMUNICATIONS

IF15.7

2024-09-27

OAAI

Tierney, Braden T.; Foox, Jonathan; Ryon, Krista A.; Butler, Daniel; Damle, Namita; Young, Benjamin G.; Mozsary, Christopher; Babler, Kristina M.; Yin, Xue; Carattini, Yamina; Andrews, David; Lucaci, Alexander G.; Solle, Natasha Schaefer; Kumar, Naresh; Shukla, Bhavarth; Vidovic, Dusica; Currall, Benjamin; Williams, Sion L.; Schurer, Stephan C.; Stevenson, Mario; Amirali, Ayaaz; Beaver, Cynthia Campos; Kobetz, Erin; Boone, Melinda M.; Reding, Brian; Laine, Jennifer; Comerford, Samuel; Lamar, Walter E.; Tallon, John J.; Hirschberg, Jeremy Wain; Proszynski, Jacqueline; Al Ghalith, Gabriel; Kurt, Kubra Can; Sharkey, Mark E.; Church, George M.; Grills, George S.; Solo-Gabriele, Helena M.; Mason, Christopher E.

Genome and clonal hematopoiesis stability contrasts with immune, cfDNA, mitochondrial, and telomere length changes during short duration spaceflight

PRECISION CLINICAL MEDICINE

IF5

2024-04-08

OAAI

Garcia-Medina, J. Sebastian; Sienkiewicz, Karolina; Narayanan, S. Anand; Overbey, Eliah G.; Grigorev, Kirill; Ryon, Krista A.; Burke, Marissa; Proszynski, Jacqueline; Tierney, Braden; Schmidt, Caleb M.; Mencia-Trinchant, Nuria; Klotz, Remi; Ortiz, Veronica; Foox, Jonathan; Chin, Christopher; Najjar, Deena; Matei, Irina; Chan, Irenaeus; Cruchaga, Carlos; Kleinman, Ashley; Kim, Jangkeun; Lucaci, Alexander; Loy, Conor; Mzava, Omary; De Vlaminck, Iwijn; Singaraju, Anvita; Taylor, Lynn E.; Schmidt, Julian C.; Schmidt, Michael A.; Blease, Kelly; Moreno, Juan; Boddicker, Andrew; Zhao, Junhua; Lajoie, Bryan; Altomare, Andrew; Kruglyak, Semyon; Levy, Shawn; Yu, Min; Hassane, Duane C.; Bailey, Susan M.; Bolton, Kelly; Mateus, Jaime; Mason, Christopher E.

Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses 通过多核苷酸取代的进化捷径及其对自然选择分析的影响

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2023-07-03

OAAI

Lucaci, Alexander G.; Zehr, Jordan D.; Enard, David; Thornton, Joseph W.; Pond, Sergei L. Kosakovsky

The phylogenomics and evolutionary dynamics of the organellar genomes in carnivorous Utricularia and Genlisea species (Lentibulariaceae)

MOLECULAR PHYLOGENETICS AND EVOLUTION

IF3.6

2023-04-01

PREAI

Silva, Saura R.; Miranda, Vitor F. O.; Michael, Todd P.; Plachno, Bartosz J.; Matos, Ramon G.; Adamec, Lubomir; Pond, Sergei L. K.; Lucaci, Alexander G.; Pinheiro, Daniel G.; Varani, Alessandro M.

Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes

VIRUS EVOLUTION

IF4

2023-03-15

OAAI

Zehr, Jordan D.; Kosakovsky Pond, Sergei L.; Millet, Jean K.; Olarte-Castillo, Ximena A.; Lucaci, Alexander G.; Shank, Stephen D.; Ceres, Kristina M.; Choi, Annette; Whittaker, Gary R.; Goodman, Laura B.; Stanhope, Michael J.

Human HspB1, HspB3, HspB5 and HspB8: Shaping these disease factors during vertebrate evolution

CELL STRESS & CHAPERONES

IF3.2

2022-07-01

OAAI

Benndorf, Rainer; Velazquez, Ryan; Zehr, Jordan D.; Pond, Sergei L. Kosakovsky; Martin, Jody L.; Lucaci, Alexander G.

Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

NATURE MEDICINE

IF50

2022-06-27

432

OAAI

Tegally, Houriiyah; Moir, Monika; Everatt, Josie; Giovanetti, Marta; Scheepers, Cathrine; Wilkinson, Eduan; Subramoney, Kathleen; Makatini, Zinhle; Moyo, Sikhulile; Amoako, Daniel G.; Baxter, Cheryl; Althaus, Christian L.; Anyaneji, Ugochukwu J.; Kekana, Dikeledi; Viana, Raquel; Giandhari, Jennifer; Lessells, Richard J.; Maponga, Tongai; Maruapula, Dorcas; Choga, Wonderful; Matshaba, Mogomotsi; Mbulawa, Mpaphi B.; Msomi, Nokukhanya; Naidoo, Yeshnee; Pillay, Sureshnee; Sanko, Tomasz Janusz; San, James E.; Scott, Lesley; Singh, Lavanya; Magini, Nonkululeko A.; Smith-Lawrence, Pamela; Stevens, Wendy; Dor, Graeme; Tshiabuila, Derek; Wolter, Nicole; Preiser, Wolfgang; Treurnicht, Florette K.; Venter, Marietjie; Chiloane, Georginah; McIntyre, Caitlyn; O'Toole, Aine; Ruis, Christopher; Peacock, Thomas P.; Roemer, Cornelius; Kosakovsky Pond, Sergei L.; Williamson, Carolyn; Pybus, Oliver G.; Bhiman, Jinal N.; Glass, Allison; Martin, Darren P.; Jackson, Ben; Rambaut, Andrew; Laguda-Akingba, Oluwakemi; Gaseitsiwe, Simani; von Gottberg, Anne; de Oliveira, Tulio; Bester, Armand Phillip; Claassen, Mathilda; Doolabh, Deelan; Mudau, Innocent; Mbhele, Nokuzola; Engelbrecht, Susan; Goedhals, Dominique; Hardie, Diana; Hsiao, Nei-Yuan; Iranzadeh, Arash; Ismail, Arshad; Joseph, Rageema; Maharaj, Arisha; Mahlangu, Boitshoko; Mahlakwane, Kamela; Davis, Ashlyn; Marais, Gert; Mlisana, Koleka; Mnguni, Anele; Mohale, Thabo; Motsatsi, Gerald; Mwangi, Peter; Ntuli, Noxolo; Nyaga, Martin; Olubayo, Luicer; Radibe, Botshelo; Ramphal, Yajna; Ramphal, Upasana; Strasheim, Wilhelmina; Tebeila, Naume; van Wyk, Stephanie; Wilson, Shannon; Lucaci, Alexander G.; Weaver, Steven; Maharaj, Akhil; Pillay, Yusasha; Davids, Michaela; Mendes, Adriano; Mayaphi, Simnikiwe

The evolution of BDNF is defined by strict purifying selection and prodomain spatial coevolution, but what does it mean for human brain disease?

TRANSLATIONAL PSYCHIATRY

IF6.2

2022-06-22

OAAI

Lucaci, Alexander G.; Notaras, Michael J.; Pond, Sergei L. Kosakovsky; Colak, Dilek

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function 选择分析确定了Omicron谱系BA.1中可能影响尖峰功能的异常突变变化簇

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2022-03-24

OAAI

Martin, Darren P.; Lytras, Spyros; Lucaci, Alexander G.; Maier, Wolfgang; Gruening, Bjoern; Shank, Stephen D.; Weaver, Steven; MacLean, Oscar A.; Orton, Richard J.; Lemey, Philippe; Boni, Maciej F.; Tegally, Houriiyah; Harkins, Gordon W.; Scheepers, Cathrine; Bhiman, Jinal N.; Everatt, Josie; Amoako, Daniel G.; San, James Emmanuel; Giandhari, Jennifer; Sigal, Alex; Williamson, Carolyn; Hsiao, Nei-yuan; von Gottberg, Anne; De Klerk, Arne; Shafer, Robert W.; Robertson, David L.; Wilkinson, Robert J.; Sewell, B. Trevor; Lessells, Richard; Nekrutenko, Anton; Greaney, Allison J.; Starr, Tyler N.; Bloom, Jesse D.; Murrell, Ben; Wilkinson, Eduan; Gupta, Ravindra K.; de Oliveira, Tulio; Kosakovsky Pond, Sergei L.

研究方向