Mason, Mike; Lapuente-Santana, Oscar; Halkola, Anni S.; Wang, Wenyu; Mall, Raghvendra; Xiao, Xu; Kaufman, Jacob; Fu, Jingxin; Pfeil, Jacob; Banerjee, Jineta; Chung, Verena; Chang, Han; Chasalow, Scott D.; Lin, Hung Ying; Chai, Rongrong; Yu, Thomas; Finotello, Francesca; Mirtti, Tuomas; Mayranpaa, Mikko I.; Bao, Jie; Verschuren, Emmy W.; Ahmed, Eiman I.; Ceccarelli, Michele; Miller, Lance D.; Monaco, Gianni; Hendrickx, Wouter R. L.; Sherif, Shimaa; Yang, Lin; Tang, Ming; Gu, Shengqing Stan; Zhang, Wubing; Zhang, Yi; Zeng, Zexian; Das Sahu, Avinash; Liu, Yang; Yang, Wenxian; Bedognetti, Davide; Tang, Jing; Eduati, Federica; Laajala, Teemu D.; Geese, William J.; Guinney, Justin; Szustakowski, Joseph D.; Vincent, Benjamin G.; Carbone, David P.

Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA

NATURE PROTOCOLS

IF16

2023-06-305

PRE

A landscape of response to drug combinations in non-small cell lung cancer

NATURE COMMUNICATIONS

IF15.7

2023-06-2814

OAAI

Nair, Nishanth Ulhas; Greninger, Patricia; Zhang, Xiaohu; Friedman, Adam A.; Amzallag, Arnaud; Cortez, Eliane; Sahu, Avinash Das; Lee, Joo Sang; Dastur, Anahita; Egan, Regina K.; Murchie, Ellen; Ceribelli, Michele; Crowther, Giovanna S.; Beck, Erin; McClanaghan, Joseph; Klump-Thomas, Carleen; Boisvert, Jessica L.; Damon, Leah J.; Wilson, Kelli M.; Ho, Jeffrey; Tam, Angela; McKnight, Crystal; Michael, Sam; Itkin, Zina; Garnett, Mathew J.; Engelman, Jeffrey A.; Haber, Daniel A.; Thomas, Craig J.; Ruppin, Eytan; Benes, Cyril H.

Discovery of Targets for Immune-Metabolic Antitumor Drugs Identifi es Estrogen-Related Receptor Alpha

CANCER DISCOVERY

IF33.3

2023-02-0614

OAAI

Sahu, Avinash; Wang, Xiaoman; Munson, Phillip; Klomp, Jan P. G.; Wang, Xiaoqing; Gu, Shengqing Stan; Han, Ya; Qian, Gege; Nicol, Phillip; Zeng, Zexian; Wang, Chenfei; Tokheim, Collin; Zhang, Wubing; Fu, Jingxin; Wang, Jin; Nair, Nishanth Ulhas; Rens, Joost A. P.; Bourajjaj, Meriem; Jansen, Bas; Leenders, Inge; Lemmers, Jaap; Musters, Mark; van Zanten, Sanne; van Zelst, Laura; Worthington, Jenny; Lu, Jun S.; Juric, Dejan; Meyer, Clifford A.; Oubrie, Arthur; Liu, X. Shirley; Fisher, David E.; Flaherty, Keith T.

Genome-wide CRISPR screens reveal metabolic and transcriptional regulation of BTN3A and cancer susceptibility to VγgVδ2 T cell targeting

JOURNAL OF IMMUNOLOGY

IF3.4

2022-05-010

PRE

A large cellular screen charting the landscape of synergistic drug combinations in lung cancer.

CANCER RESEARCH

IF16.6

2021-07-010

PRE

Cell-free DNA captures tumor heterogeneity and driver alterations in rapid autopsies with pre-treated metastatic cancer

NATURE COMMUNICATIONS

IF15.7

2021-05-2739

OAAI

Evolution of delayed resistance to immunotherapy in a melanoma responder

NATURE MEDICINE

IF50

2021-05-0367

OAAI

Liu, David; Lin, Jia-Ren; Robitschek, Emily J.; Kasumova, Gyulnara G.; Heyde, Alex; Shi, Alvin; Kraya, Adam; Zhang, Gao; Moll, Tabea; Frederick, Dennie T.; Chen, Yu-An; Wang, Shu; Schapiro, Denis; Ho, Li-Lun; Bi, Kevin; Sahu, Avinash; Mei, Shaolin; Miao, Benchun; Sharova, Tatyana; Alvarez-Breckenridge, Christopher; Stocking, Jackson H.; Kim, Tommy; Fadden, Riley; Lawrence, Donald; Hoang, Mai P.; Cahill, Daniel P.; Malehmir, Mohsen; Nowak, Martin A.; Brastianos, Priscilla K.; Lian, Christine G.; Ruppin, Eytan; Izar, Benjamin; Herlyn, Meenhard; Van Allen, Eliezer M.; Nathanson, Katherine; Flaherty, Keith T.; Sullivan, Ryan J.; Kellis, Manolis; Sorger, Peter K.; Boland, Genevieve M.

Therapeutically Increasing MHC-I Expression Potentiates Immune Checkpoint Blockade

治疗性增加mhc-i表达增强免疫检查点阻断

CANCER DISCOVERY

IF33.3

2021-02-15132

Gu, Shengqing Stan; Zhang, Wubing; Wang, Xiaoqing; Jiang, Peng; Traugh, Nicole; Li, Ziyi; Meyer, Clifford; Stewig, Blair; Xie, Yingtian; Bu, Xia; Manos, Michael P.; Font-Tello, Alba; Gjini, Evisa; Lako, Ana; Lim, Klothilda; Conway, Jake; Tewari, Alok K.; Zeng, Zexian; Das Sahu, Avinash; Tokheim, Collin; Weirather, Jason L.; Fu, Jingxin; Zhang, Yi; Kroger, Benjamin; Liang, Jin Hua; Cejas, Paloma; Freeman, Gordon J.; Rodig, Scott; Long, Henry W.; Gewurz, Benjamin E.; Hodi, F. Stephen; Brown, Myles; Liu, X. Shirley

Clonal tracing reveals diverse patterns of response to immune checkpoint blockade

GENOME BIOLOGY

IF9.4

2020-10-1516

OAAI

CRISPR Screens Identify Essential Cell Growth Mediators in BRAF Inhibitor-Resistant Melanoma

GENOMICS PROTEOMICS & BIOINFORMATICS

IF7.9

2020-05-130

OAAI

Plasma sequencing demonstrates that breast cancer patients have a higher prevalence of clonal and multiple PIK3CA mutations than other solid tumor patients

CANCER RESEARCH