Timothy L. Tickle

Broad Institute of Harvard and MIT

H指数:30

被引数:1.7万

个人简介

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教育背景

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工作经历

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荣誉奖项

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MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data

GENOME BIOLOGY

IF9.4

2024-08-011

OAAI

The single-cell opioid responses in the context of HIV (SCORCH) consortium

MOLECULAR PSYCHIATRY

IF10.1

2024-06-151

OAAI

Ament, Seth A.; Campbell, Rianne R.; Lobo, Mary Kay; Receveur, Joseph P.; Agrawal, Kriti; Borjabad, Alejandra; Byrareddy, Siddappa N.; Chang, Linda; Clarke, Declan; Emani, Prashant; Gabuzda, Dana; Gaulton, Kyle J.; Giglio, Michelle; Giorgi, Federico M.; Gok, Busra; Guda, Chittibabu; Hadas, Eran; Herb, Brian R.; Hu, Wen; Huttner, Anita; Ishmam, Mohammad R.; Jacobs, Michelle M.; Kelschenbach, Jennifer; Kim, Dong-Wook; Lee, Cheyu; Liu, Shuhui; Liu, Xiaokun; Madras, Bertha K.; Mahurkar, Anup A.; Mash, Deborah C.; Mukamel, Eran A.; Niu, Meng; O'Connor, Richard M.; Pagan, Chelsea M.; Pang, Alina P. S.; Pillai, Piya; Repunte-Canonigo, Vez; Ruzicka, W. Brad; Stanley, Jay; Tickle, Timothy; Tsai, Shang-Yi A.; Wang, Allen; Wills, Lauren; Wilson, Alyssa M.; Wright, Susan N.; Xu, Siwei; Yang, Junchen; Zand, Maryam; Zhang, Le; Zhang, Jing; Akbarian, Schahram; Buch, Shilpa; Cheng, Christine S.; Corley, Michael J.; Fox, Howard S.; Gerstein, Mark; Gummuluru, Suryaram; Heiman, Myriam; Ho, Ya-Chi; Kellis, Manolis; Kenny, Paul J.; Kluger, Yuval; Milner, Teresa A.; Moore, David J.; Morgello, Susan; Ndhlovu, Lishomwa C.; Rana, Tariq M.; Sanna, Pietro Paolo; Satterlee, John S.; Sestan, Nenad; Spector, Stephen A.; Spudich, Serena; Tilgner, Hagen U.; Volsky, David J.; White, Owen R.; Williams, Dionne W.; Zeng, Hongkui

Guided construction of single cell reference for human and mouse lung

指导构建人与小鼠肺单细胞参考

NATURE COMMUNICATIONS

IF15.7

2023-07-2925

OAAI

Guo, Minzhe; Morley, Michael P.; Jiang, Cheng; Wu, Yixin; Li, Guangyuan; Du, Yina; Zhao, Shuyang; Wagner, Andrew; Cakar, Adnan Cihan; Kouril, Michal A.; Jin, Kang; Gaddis, Nathan C.; Kitzmiller, Joseph A. M.; Stewart, Kathleen; Basil, Maria C.; Lin, Susan M. A.; Ying, Yun; Babu, Apoorva P.; Wikenheiser-Brokamp, Kathryn A.; Mun, Kyu Shik N.; Naren, Anjaparavanda P. S.; Clair, Geremy S.; Adkins, Joshua N. J.; Pryhuber, Gloria S. L.; Misra, Ravi S.; Aronow, Bruce J.; Tickle, Timothy L. E.; Salomonis, Nathan A.; Sun, Xin; Morrisey, Edward E.; Whitsett, Jeffrey A.; Xu, Yan

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

CELL REPORTS METHODS

IF4.5

2023-05-014

OAAI

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain

NUCLEIC ACIDS RESEARCH

IF13.1

2022-11-0115

OAAI

Ament, Seth A.; Adkins, Ricky S.; Carter, Robert; Chrysostomou, Elena; Colantuoni, Carlo; Crabtree, Jonathan; Creasy, Heather H.; Degatano, Kylee; Felix, Victor; Gandt, Peter; Garden, Gwenn A.; Giglio, Michelle; Herb, Brian R.; Khajouei, Farzaneh; Kiernan, Elizabeth; McCracken, Carrie; McDaniel, Kennedy; Nadendla, Suvarna; Nickel, Lance; Olley, Dustin; Orvis, Joshua; Receveur, Joseph P.; Schor, Mike; Sonthalia, Shreyash; Tickle, Timothy L.; Way, Jessica; Hertzano, Ronna; Mahurkar, Anup A.; White, Owen R.

Toward a data infrastructure for the Plant Cell Atlas

PLANT PHYSIOLOGY

IF6.9

2022-10-067

GA4GH: International policies and standards for data sharing across genomic research and healthcare

GA4GH: 跨基因组研究和医疗保健的数据共享的国际政策和标准

CELL GENOMICS

IF9

2021-11-0196

OAAI

Rehm, Heidi L.; Page, Angela J. H.; Smith, Lindsay; Adams, Jeremy B.; Alterovitz, Gil; Babb, Lawrence J.; Barkley, Maxmillian P.; Baudis, Michael; Beauvais, Michael J. S.; Beck, Tim; Beckmann, Jacques S.; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K.; Boughtwood, Tiffany F.; Bourque, Guillaume; Bowers, Sarion R.; Brookes, Anthony J.; Brudno, Michael; Brush, Matthew H.; Bujold, David; Burdett, Tony; Buske, Orion J.; Cabili, Moran N.; Cameron, Daniel L.; Carroll, Robert J.; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P.; Chen, Shu Hui; Cherry, J. Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L.; Cook-Deegan, Robert M.; Courtot, Melanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M.; Denisko, Danielle; Doerr, Megan J.; Dolman, Lena I.; Dove, Edward S.; Dursi, L. Jonathan; Dyke, Stephanie O. M.; Eddy, James A.; Eilbeck, Karen; Ellrott, Kyle P.; Fairley, Susan; Fakhro, Khalid A.; Firth, Helen V.; Fitzsimons, Michael S.; Fiume, Marc; Flicek, Paul; Fore, Ian M.; Freeberg, Mallory A.; Freimuth, Robert R.; Fromont, Lauren A.; Fuerth, Jonathan; Gaff, Clara L.; Gan, Weiniu; Ghanaim, Elena M.; Glazer, David; Green, Robert C.; Griffith, Malachi; Griffith, Obi L.; Grossman, Robert L.; Groza, Tudor; Auvil, Jaime M. Guidry; Guigo, Roderic; Gupta, Dipayan; Haendel, Melissa A.; Hamosh, Ada; Hansen, David P.; Hart, Reece K.; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M.; Ho, Calvin W. L.; Hobb, Ashley E.; Hoffman, Michael M.; Hofmann, Oliver M.; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E.; Husami, Ammar; Jacobsen, Julius O.; Jamuar, Saumya S.; Janes, Elizabeth L.; Jeanson, Francis; Jene, Aina; Johns, Amber L.; Joly, Yann; Jones, Steven J. M.; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M.; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M.; Konopko, Melissa A.; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F.; Linden, Mikael; Liu, Xianglin; Liyanage, Isuru Udara; Lopez, Javier; Lucassen, Anneke M.; Lukowski, Michael; Mann, Alice L.; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J.; Molnar-Gabor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C.; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H.; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyronen, Tommi H.; O'Connor, Brian D.; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A. D.; Palumbo, Emilio; Parkinson, Helen E.; Philippakis, Anthony A.; Pizarro, Angel D.; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A.; Robinson, Peter N.; Rodarmer, Kurt W.; Rodriguez, Laura Lyman; Rubin, Alan F.; Rueda, Manuel; Rushton, Gregory A.; Ryan, Rosalyn S.; Saunders, Gary I.; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C.; Skantharajah, Neerjah; Smith, Albert V.; Sofia, Heidi J.; Spalding, Dylan; Spurdle, Amanda B.; Stark, Zornitza; Stein, Lincoln D.; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A.; Thomson, Alastair A.; Thorogood, Adrian; Tickle, Timothy L.; Tokunaga, Katsushi; Tomroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F.; Viner, Coby; Voisin, Craig; Wagner, Alex H.; Wallace, Susan E.; Walsh, Brian P.; Williams, Marc S.; Winkler, Eva C.; Wold, Barbara J.; Wood, Grant M.; Woolley, J. Patrick; Yamasaki, Chisato; Yates, Andrew D.; Yung, Christina K.; Zass, Lyndon J.; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan

Blood and immune development in human fetal bone marrow and Down syndrome

Nature

IF48.5

2021-09-290

PRE

Laura Jardine; Simone Webb; Issac Goh; Mariana Quiroga Londoño; Gary Reynolds; Michael Mather; Bayanne Olabi; Emily Stephenson; Rachel A. Botting; Dave Horsfall; Justin Engelbert; Daniel Maunder; Nicole Mende; Caitlin Murnane; Emma Dann; Jim McGrath; Hamish King; Iwo Kucinski; Rachel Queen; Christopher D. Carey; Caroline Shrubsole; Elizabeth Poyner; Meghan Acres; Claire Jones; Thomas Ness; Rowen Coulthard; Natalina Elliott; Sorcha O’Byrne; Myriam L. R. Haltalli; John E. Lawrence; Steven Lisgo; Petra Balogh; Kerstin B. Meyer; Elena Prigmore; Kirsty Ambridge; Mika Sarkin Jain; Mirjana Efremova; Keir Pickard; Thomas Creasey; Jaume Bacardit; Deborah Henderson; Jonathan Coxhead; Andrew Filby; Rafiqul Hussain; David Dixon; David McDonald; Dorin-Mirel Popescu; Monika S. Kowalczyk; Bo Li; Orr Ashenberg; Marcin Tabaka; Danielle Dionne; Timothy L. Tickle; Michal Slyper; Orit Rozenblatt-Rosen; Aviv Regev; Sam Behjati; Elisa Laurenti; Nicola K. Wilson; Anindita Roy; Berthold Göttgens; Irene Roberts; Sarah A. Teichmann; Muzlifah Haniffa

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

Cumulus为大规模单细胞和单核rna-seq提供基于云的数据分析

NATURE METHODS

IF32.1

2020-07-27110

OAAI

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors (vol 26, pg 792, 2020)

NATURE MEDICINE

IF50

2020-06-2515

OAAI

Slyper, Michal; Porter, Caroline B. M.; Ashenberg, Orr; Waldman, Julia; Drokhlyansky, Eugene; Wakiro, Isaac; Smillie, Christopher; Smith-Rosario, Gabriela; Wu, Jingyi; Dionne, Danielle; Vigneau, Sebastien; Jane-Valbuena, Judit; Tickle, Timothy L.; Napolitano, Sara; Su, Mei-Ju; Patel, Anand G.; Karlstrom, Asa; Gritsch, Simon; Nomura, Masashi; Waghray, Avinash; Gohil, Satyen H.; Tsankov, Alexander M.; Jerby-Arnon, Livnat; Cohen, Ofir; Klughammer, Johanna; Rosen, Yanay; Gould, Joshua; Nguyen Lan; Hofree, Matan; Tramontozzi, Peter J.; Li, Bo; Wu, Catherine J.; Izar, Benjamin; Haq, Rizwan; Hodi, F. Stephen; Yoon, Charles H.; Hata, Aaron N.; Baker, Suzanne J.; Suva, Mario L.; Bueno, Raphael; Stover, Elizabeth H.; Clay, Michael R.; Dyer, Michael A.; Collins, Natalie B.; Matulonis, Ursula A.; Wagle, Nikhil; Johnson, Bruce E.; Rotem, Asaf; Rozenblatt-Rosen, Orit; Regev, Aviv

Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes

IMMUNITY

IF26.3

2020-06-0181

OAAI

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

NATURE MEDICINE

IF50

2020-05-11400

OAAI

Slyper, Michal; Porter, Caroline B. M.; Ashenberg, Orr; Waldman, Julia; Drokhlyansky, Eugene; Wakiro, Isaac; Smillie, Christopher; Smith-Rosario, Gabriela; Wu, Jingyi; Dionne, Danielle; Vigneau, Sebastien; Jane-Valbuena, Judit; Tickle, Timothy L.; Napolitano, Sara; Su, Mei-Ju; Patel, Anand G.; Karlstrom, Asa; Gritsch, Simon; Nomura, Masashi; Waghray, Avinash; Gohil, Satyen H.; Tsankov, Alexander M.; Jerby-Arnon, Livnat; Cohen, Ofir; Klughammer, Johanna; Rosen, Yanay; Gould, Joshua; Lan Nguyen; Hofree, Matan; Tramontozzi, Peter J.; Li, Bo; Wu, Catherine J.; Izar, Benjamin; Haq, Rizwan; Hodi, F. Stephen; Yoon, Charles H.; Hata, Aaron N.; Baker, Suzanne J.; Suva, Mario L.; Bueno, Raphael; Stover, Elizabeth H.; Clay, Michael R.; Dyer, Michael A.; Collins, Natalie B.; Matulonis, Ursula A.; Wagle, Nikhil; Johnson, Bruce E.; Rotem, Asaf; Rozenblatt-Rosen, Orit; Regev, Aviv

The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution

DEVELOPMENTAL CELL

IF8.7

2019-04-0149

OAAI

Taylor, Deanne M.; Aronow, Bruce J.; Tan, Kai; Bernt, Kathrin; Salomonis, Nathan; Greene, Casey S.; Frolova, Alina; Henrickson, Sarah E.; Wells, Andrew; Pei, Liming; Jaiswal, Jyoti K.; Whitsett, Jeffrey; Hamilton, Kathryn E.; MacParland, Sonya A.; Kelsen, Judith; Heuckeroth, Robert O.; Potter, S. Steven; Vella, Laura A.; Terry, Natalie A.; Ghanem, Louis R.; Kennedy, Benjamin C.; Helbig, Ingo; Sullivan, Kathleen E.; Castelo-Soccio, Leslie; Kreigstein, Arnold; Herse, Florian; Nawijn, Martijn C.; Koppelman, Gerard H.; Haendel, Melissa; Harris, Nomi L.; Rokita, Jo Lynne; Zhang, Yuanchao; Regev, Aviv; Rozenblatt-Rosen, Orit; Rood, Jennifer E.; Tickle, Timothy L.; Vento-Tormo, Roser; Alimohamed, Saif; Lek, Monkol; Mar, Jessica C.; Loomes, Kathleen M.; Barrett, David M.; Uapinyoying, Prech; Beggs, Alan H.; Agrawal, Pankaj B.; Chen, Yi-Wen; Muir, Amanda B.; Garmire, Lana X.; Snapper, Scott B.; Nazarian, Javad; Seeholzer, Steven H.; Fazelinia, Hossein; Singh, Larry N.; Faryabi, Robert B.; Raman, Pichai; Dawany, Noor; Xie, Hongbo Michael; Devkota, Batsal; Diskin, Sharon J.; Anderson, Stewart A.; Rappaport, Eric F.; Peranteau, William; Wikenheiser-Brokamp, Kathryn A.; Teichmann, Sarah; Wallace, Douglas; Peng, Tao; Ding, Yang-yang; Kim, Man S.; Xing, Yi; Kong, Sek Won; Bonnemann, Carsten G.; Mandl, Kenneth D.; White, Peter S.

Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer

SCIENTIFIC REPORTS

IF3.9

2017-12-1593

OAAI

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

组织映射的Axolotl从头转录组可以鉴定肢体再生因子

CELL REPORTS

IF6.9

2017-01-01677

OAAI

Fast and accurate fusion transcript detection using the Trinity Cancer Transcriptome Analysis Toolkit