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Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols Forry, Samuel P.; Servetas, Stephanie L.; Kralj, Jason G.; Soh, Keng; Hadjithomas, Michalis; Cano, Raul; Carlin, Martha; de Amorim, Maria G.; Auch, Benjamin; Bakker, Matthew G.; Bartelli, Thais F.; Bustamante, Juan P.; Cassol, Ignacio; Chalita, Mauricio; Dias-Neto, Emmanuel; Del Duca, Aaron; Gohl, Daryl M.; Kazantseva, Jekaterina; Haruna, Muyideen T.; Menzel, Peter; Moda, Bruno S.; Neuberger-Castillo, Lorieza; Nunes, Diana N.; Patel, Isha R.; Peralta, Rodrigo D.; Saliou, Adrien; Schwarzer, Rolf; Sevilla, Samantha; Takenaka, Isabella K. T. M.; Wang, Jeremy R.; Knight, Rob; Gevers, Dirk; Jackson, Scott A. 分享 收藏
Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics 微生物合生素在酒精或抗生素扰动后拯救肠道微生物组体外代谢活性的能力 Tierney, Braden T.; Van den Abbeele, Pieter; Al-Ghalith, Gabriel A.; Verstrepen, Lynn; Ghyselinck, Jonas; Calatayud, Marta; Marzorati, Massimo; Gadir, Azza A.; Daisley, Brendan; Reid, Gregor; Bron, Peter A.; Gevers, Dirk; Dhir, Raja; Simmons, Sheri L. 分享 收藏
Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas 定义的微生物群移植可恢复炎症性肠病微生物定植小鼠的Th17/ror γ T调节性T细胞平衡 Britton, Graham J.; Contijoch, Eduardo J.; Spindler, Matthew P.; Aggarwala, Varun; Dogan, Belgin; Bongers, Gerold; San Mateo, Lani; Baltus, Andrew; Das, Anuk; Gevers, Dirk; Borody, Thomas J.; Kaakoush, Nadeem O.; Kamm, Michael A.; Mitchell, Hazel; Paramsothy, Sudarshan; Clemente, Jose C.; Colombel, Jean-Frederic; Simpson, Kenneth W.; Dubinsky, Marla C.; Grinspan, Ari; Faith, Jeremiah J. 分享 收藏
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Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice Britton, Graham J.; Contijoch, Eduardo J.; Mogno, Ilaria; Vennaro, Olivia H.; Llewellyn, Sean R.; Ng, Ruby; Li, Zhihua; Mortha, Arthur; Merad, Miriam; Das, Anuk; Gevers, Dirk; McGovern, Dermot P. B.; Singh, Namita; Braun, Jonathan; Jacobs, Jonathan P.; Clemente, Jose C.; Grinspan, Ari; Sands, Bruce E.; Colombel, Jean-Frederic; Dubinsky, Marla C.; Faith, Jeremiah J. 分享 收藏
The classroom microbiome and asthma morbidity in children attending 3 inner-city schools Lai, Peggy S.; Kolde, Raivo; Franzosa, Eric A.; Gaffin, Jonathan M.; Baxi, Sachin N.; Sheehan, William J.; Gold, Diane R.; Gevers, Dirk; Xavier, Ramnik J.; Phipatanakul, Wanda 分享 收藏
Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer Boernigen, Daniela; Ren, Boyu; Pickard, Robert; Li, Jingfeng; Ozer, Enver; Hartmann, Erica M.; Xiao, Weihong; Tickle, Timothy; Rider, Jennifer; Gevers, Dirk; Franzosa, Eric A.; Davey, Mary Ellen; Gillison, Maura L.; Huttenhower, Curtis 分享 收藏
Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment Hsu, Tiffany; Joice, Regina; Vallarino, Jose; Abu-Ali, Galeb; Hartmann, Erica M.; Shafquat, Afrah; DuLong, Casey; Baranowski, Catherine; Gevers, Dirk; Green, Jessica L.; Morgan, Xochitl C.; Spengle, John D.; Huttenhower, Curtis 分享 收藏
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability Yassour, Moran; Vatanen, Tommi; Siljander, Heli; Hamalainen, Anu-Maaria; Harkonen, Taina; Ryhanen, Samppa J.; Franzosa, Eric A.; Vlamakis, Hera; Huttenhower, Curtis; Gevers, Dirk; Lander, Eric S.; Knip, Mikael; Xavier, Ramnik J. 分享 收藏
Gene-Microbiome Interactions Underlying the Onset and the Clinical Phenotypes of Inflammatory Bowel Disease Imhann, Floris; Vila, Arnau Vich; Bonder, Marc Jan; Gevers, Dirk; Fu, Jingyuan; Visschedijk, Marijn C.; Spekhorst, Lieke M.; Franke, Lude; van Dullemen, Hendrik; Ter Steege, Rinze; Huttenhower, Curtis; Dijkstra, Gerard; Xavier, Ramnik; Wijmenga, Cisca; Festen, Eleonora A.; Zhernakova, Alexandra; Weersma, Rinse K. 分享 收藏
Characterization of Intestinal Microbiota in Ulcerative Colitis Patients with and without Primary Sclerosing Cholangitis Kevans, D.; Tyler, A. D.; Holm, K.; Jorgensen, K. K.; Vatn, M. H.; Karlsen, T. H.; Kaplan, G. G.; Eksteen, B.; Gevers, D.; Hov, J. R.; Silverberg, M. S. 分享 收藏
The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids Fu, Jingyuan; Bonder, Marc Jan; Cenit, Maria Carmen; Tigchelaar, Ettje F.; Maatman, Astrid; Dekens, Jackie A. M.; Brandsma, Eelke; Marczynska, Joanna; Imhann, Floris; Weersma, Rinse K.; Franke, Lude; Poon, Tiffany W.; Xavier, Ramnik J.; Gevers, Dirk; Hofker, Marten H.; Wijmenga, Cisca; Zhernakova, Alexandra 分享 收藏
Host genetic variation impacts microbiome composition across human body sites Blekhman, Ran; Goodrich, Julia K.; Huang, Katherine; Sun, Qi; Bukowski, Robert; Bell, Jordana T.; Spector, Timothy D.; Keinan, Alon; Ley, Ruth E.; Gevers, Dirk; Clark, Andrew G. 分享 收藏
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Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease Morgan, Xochitl C.; Kabakchiev, Boyko; Waldron, Levi; Tyler, Andrea D.; Tickle, Timothy L.; Milgrom, Raquel; Stempak, Joanne M.; Gevers, Dirk; Xavier, Ramnik J.; Silverberg, Mark S.; Huttenhower, Curtis 分享 收藏
Pediatric Crohn disease patients exhibit specific Heal transcriptome and microbiome signature (vol 124, pg 3617, 2014) Haberman, Yael; Tickle, Timothy L.; Dexheimer, Phillip J.; Kim, Mi-Ok; Tang, Dora; Karns, Rebekah; Baldassano, Robert N.; Noe, Joshua D.; Rosh, Joel; Markowitz, James; Heyman, Melvin B.; Griffiths, Anne M.; Crandall, Wallace V.; Mack, David R.; Baker, Susan S.; Huttenhower, Curtis; Keljo, David J.; Hyams, Jeffrey S.; Kugathasan, Subra; Walters, Thomas D.; Aronow, Bruce; Xavier, Ramnik J.; Gevers, Dirk; Denson, Lee A. 分享 收藏
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature Haberman, Yael; Tickle, Timothy L.; Dexheimer, Phillip J.; Kim, Mi-Ok; Tang, Dora; Karns, Rebekah; Baldassano, Robert N.; Noe, Joshua D.; Rosh, Joel; Markowitz, James; Heyman, Melvin B.; Griffiths, Anne M.; Crandall, Wallace V.; Mack, David R.; Baker, Susan S.; Huttenhower, Curtis; Keljo, David J.; Hyams, Jeffrey S.; Kugathasan, Subra; Walters, Thomas D.; Aronow, Bruce; Xavier, Ramnik J.; Gevers, Dirk; Denson, Lee A. 分享 收藏
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