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I

Ikuo Fukuda

riken

20H指数
81论文数
1.2K被引数
收录论文 19
发表时间
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A cutoff-based method with charge-distribution-data driven pair potentials for efficiently estimating electrostatic interactions in molecular systems
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2023-12-19
err0
PREAI
errFukuda, Ikuo; Moritsugu, Kei; Higo, Junichi; Fukunishi, Yoshifumi
err分享
err收藏
Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule
errSCIENTIFIC REPORTS
IF3.9
err2022-08-13
err7
errOAAI
errHigo, Junichi; Kasahara, Kota; Bekker, Gert-Jan; Ma, Benson; Sakuraba, Shun; Iida, Shinji; Kamiya, Narutoshi; Fukuda, Ikuo; Kono, Hidetoshi; Fukunishi, Yoshifumi; Nakamura, Haruki
err分享
err收藏
Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nose-Hoover Equation
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2021-04-09
err2
PREAI
errMoritsugu, Kei; Takeuchi, Koh; Kamiya, Narutoshi; Higo, Junichi; Yasumatsu, Isao; Fukunishi, Yoshifumi; Fukuda, Ikuo
err分享
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Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations
errSCIENTIFIC REPORTS
IF3.9
err2021-03-03
err13
errOAAI
errBekker, Gert-Jan; Fukuda, Ikuo; Higo, Junichi; Fukunishi, Yoshifumi; Kamiya, Narutoshi
err分享
err收藏
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-09-10
err11
errOAAI
errHigo, Junichi; Kawabata, Takeshi; Kusaka, Ayumi; Kasahara, Kota; Kamiya, Narutoshi; Fukuda, Ikuo; Mori, Kentaro; Hata, Yutaka; Fukunishi, Yoshifumi; Nakamura, Haruki
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Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations
errSCIENTIFIC REPORTS
IF3.9
err2020-01-29
err31
errOAAI
errBekker, Gert-Jan; Fukuda, Ikuo; Higo, Junichi; Kamiya, Narutoshi
err分享
err收藏
Performance evaluation of the zero-multipole summation method in modern molecular dynamics software
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2018-05-04
err8
errOAAI
errSakuraba, Shun; Fukuda, Ikuo
err分享
err收藏
Accurate Prediction of Complex Structure and Affinity for a Flexible Protein Receptor and Its Inhibitor
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2017-05-18
err42
PREAI
errBekker, Gert-Jan; Kamiya, Narutoshi; Araki, Mitsugu; Fukuda, Ikuo; Okuno, Yasushi; Nakamura, Haruki
err分享
err收藏
A critical appraisal of the zero-multipole method: Structural, thermodynamic, dielectric, and dynamical properties of a water system
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2016-03-21
err8
errOAAI
errWang, Han; Nakamura, Haruki; Fukuda, Ikuo
err分享
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The zero-multipole summation method for estimating electrostatic interactions in molecular dynamics: Analysis of the accuracy and application to liquid systems
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2014-05-20
err19
errOAAI
errFukuda, Ikuo; Kamiya, Narutoshi; Nakamura, Haruki
err分享
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Molecular Dynamics Simulations Accelerated by GPU for Biological Macromolecules with a Non-Ewald Scheme for Electrostatic Interactions
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2013-11-19
err49
errOAAI
errMashimo, Tadaaki; Fukunishi, Yoshifumi; Kamiya, Narutoshi; Takano, Yu; Fukuda, Ikuo; Nakamura, Haruki
err分享
err收藏
Zero-multipole summation method for efficiently estimating electrostatic interactions in molecular system
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2013-11-05
err32
errOAAI
errFukuda, Ikuo
err分享
err收藏
Simple and accurate scheme to compute electrostatic interaction: Zero-dipole summation technique for molecular system and application to bulk water
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2012-08-07
err40
errOAAI
errFukuda, Ikuo; Kamiya, Narutoshi; Yonezawa, Yasushige; Nakamura, Haruki
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err收藏
Zero-Dipole Summation Method for Precisely Estimating Electrostatic Interactions in Molecular Simulation
errBIOPHYSICAL JOURNAL
IF3.1
err2012-01-01
err0
errOAAI
errFukuda, Ikuo; Kamiya, Narutoshi; Nakamura, Haruki
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Molecular dynamics scheme for precise estimation of electrostatic interaction via zero-dipole summation principle
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2011-04-28
err84
errOAAI
errFukuda, Ikuo; Yonezawa, Yasushige; Nakamura, Haruki
err分享
err收藏
Free Energy Landscapes of Alanine Dipeptide in Explicit Water Reproduced by the Force-Switching Wolf Method
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2011-03-30
err27
PREAI
errYonezawa, Yasushige; Fukuda, Ikuo; Kamiya, Narutoshi; Shimoyama, Hiromitsu; Nakamura, Haruki
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Comment on 'Preserving the Boltzmann ensemble in replica-exchange molecular dynamics' (vol 129, 164112, 2008)
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2010-04-26
err0
errOAAI
errFukuda, Ikuo
err分享
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Comment on Preserving the Boltzmann ensemble in replica-exchange molecular dynamics [J. Chem. Phys. 129, 164112 (2008)]
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2010-03-22
err9
errOAAI
errFukuda, Ikuo
err分享
err收藏
Numerical Examination of the Extended Phase-Space Volume-Preserving Integrator by the Nose-Hoover Molecular Dynamics Equations
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2008-12-17
err12
PREAI
errQueyroy, Severine; Nakamura, Haruki; Fukuda, Ikuo
err分享
err收藏

研究方向

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合作学者
合作期刊
H
Haruki Nakamura
H 指数: 75 · 论文数: 846
Y
Yasushi Okuno
H 指数: 53 · 论文数: 410
Y
Yutaka Hata
H 指数: 47 · 论文数: 266
K
Koh Takeuchi
H 指数: 42 · 论文数: 378
T
Takeshi Kawabata
H 指数: 42 · 论文数: 276
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