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SaveEmpirical validation of an automated approach to data use oversightCabili, Moran N.; Lawson, Jonathan; Saltzman, Andrea; Rushton, Greg; O'Rourke, Pearl; Wilbanks, John; Rodriguez, Laura Lyman; Nyronen, Tommi; Courtot, Melanie; Donnelly, Stacey; Philippakis, Anthony A. Share Save The Data Use Ontology to streamline responsible access to human biomedical datasetsLawson, Jonathan; Cabili, Moran N.; Kerry, Giselle; Boughtwood, Tiffany; Thorogood, Adrian; Alper, Pinar; Bowers, Sarion R.; Boyles, Rebecca R.; Brookes, Anthony J.; Brush, Matthew; Burdett, Tony; Clissold, Hayley; Donnelly, Stacey; Dyke, Stephanie O. M.; Freeberg, Mallory A.; Haendel, Melissa A.; Hata, Chihir; Holub, Petr; Jeanson, Francis; Jene, Aina; Kawashima, Minae; Kawashima, Shuichi; Konopko, Melissa; Kyomugisha, Irene; Li, Haoyuan; Linden, Mikael; Rodriguez, Laura Lyman; Morita, Mizuki; Mulder, Nicola; Muller, Jean; Nagaie, Satoshi; Nasir, Jamal; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura D.; Pandya, Ravi N.; Parkinson, Helen; Philippakis, Anthony A.; Prasser, Fabian; Rambla, Jordi; Reinold, Kathy; Rushton, Gregory A.; Saltzman, Andrea; Saunders, Gary; Sofia, Heidi J.; Spalding, John D.; Swertz, Morris A.; Tulchinsky, Ilia; Enckevort, Esther J. van; Varma, Susheel; Voisin, Craig; Yamamoto, Natsuko; Yamasaki, Chisato; Zass, Lyndon; Auvil, Jaime M. Guidry; Nyronen, Tommi H.; Courtot, Melanie Share Save GA4GH: International policies and standards for data sharing across genomic research and healthcareRehm, Heidi L.; Page, Angela J. H.; Smith, Lindsay; Adams, Jeremy B.; Alterovitz, Gil; Babb, Lawrence J.; Barkley, Maxmillian P.; Baudis, Michael; Beauvais, Michael J. S.; Beck, Tim; Beckmann, Jacques S.; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K.; Boughtwood, Tiffany F.; Bourque, Guillaume; Bowers, Sarion R.; Brookes, Anthony J.; Brudno, Michael; Brush, Matthew H.; Bujold, David; Burdett, Tony; Buske, Orion J.; Cabili, Moran N.; Cameron, Daniel L.; Carroll, Robert J.; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P.; Chen, Shu Hui; Cherry, J. Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L.; Cook-Deegan, Robert M.; Courtot, Melanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M.; Denisko, Danielle; Doerr, Megan J.; Dolman, Lena I.; Dove, Edward S.; Dursi, L. Jonathan; Dyke, Stephanie O. M.; Eddy, James A.; Eilbeck, Karen; Ellrott, Kyle P.; Fairley, Susan; Fakhro, Khalid A.; Firth, Helen V.; Fitzsimons, Michael S.; Fiume, Marc; Flicek, Paul; Fore, Ian M.; Freeberg, Mallory A.; Freimuth, Robert R.; Fromont, Lauren A.; Fuerth, Jonathan; Gaff, Clara L.; Gan, Weiniu; Ghanaim, Elena M.; Glazer, David; Green, Robert C.; Griffith, Malachi; Griffith, Obi L.; Grossman, Robert L.; Groza, Tudor; Auvil, Jaime M. Guidry; Guigo, Roderic; Gupta, Dipayan; Haendel, Melissa A.; Hamosh, Ada; Hansen, David P.; Hart, Reece K.; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M.; Ho, Calvin W. L.; Hobb, Ashley E.; Hoffman, Michael M.; Hofmann, Oliver M.; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E.; Husami, Ammar; Jacobsen, Julius O.; Jamuar, Saumya S.; Janes, Elizabeth L.; Jeanson, Francis; Jene, Aina; Johns, Amber L.; Joly, Yann; Jones, Steven J. M.; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M.; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M.; Konopko, Melissa A.; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F.; Linden, Mikael; Liu, Xianglin; Liyanage, Isuru Udara; Lopez, Javier; Lucassen, Anneke M.; Lukowski, Michael; Mann, Alice L.; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J.; Molnar-Gabor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C.; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H.; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyronen, Tommi H.; O'Connor, Brian D.; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A. D.; Palumbo, Emilio; Parkinson, Helen E.; Philippakis, Anthony A.; Pizarro, Angel D.; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A.; Robinson, Peter N.; Rodarmer, Kurt W.; Rodriguez, Laura Lyman; Rubin, Alan F.; Rueda, Manuel; Rushton, Gregory A.; Ryan, Rosalyn S.; Saunders, Gary I.; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C.; Skantharajah, Neerjah; Smith, Albert V.; Sofia, Heidi J.; Spalding, Dylan; Spurdle, Amanda B.; Stark, Zornitza; Stein, Lincoln D.; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A.; Thomson, Alastair A.; Thorogood, Adrian; Tickle, Timothy L.; Tokunaga, Katsushi; Tomroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F.; Viner, Coby; Voisin, Craig; Wagner, Alex H.; Wallace, Susan E.; Walsh, Brian P.; Williams, Marc S.; Winkler, Eva C.; Wold, Barbara J.; Wood, Grant M.; Woolley, J. Patrick; Yamasaki, Chisato; Yates, Andrew D.; Yung, Christina K.; Zass, Lyndon J.; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan Share Save International federation of genomic medicine databases using GA4GH standardsThorogood, Adrian; Rehm, Heidi L.; Goodhand, Peter; Page, Angela J. H.; Joly, Yann; Baudis, Michael; Rambla, Jordi; Navarro, Arcadi; Nyronen, Tommi H.; Linden, Mikael; Dove, Edward S.; Fiume, Marc; Brudno, Michael; Cline, Melissa S.; Birney, Ewan Share Save GA4GH Passport standard for digital identity and access permissionsVoisin, Craig; Linden, Mikael; Dyke, Stephanie O. M.; Bowers, Sarion R.; Alper, Pinar; Barkley, Maxmillian P.; Bernick, David; Chao, Jianpeng; Courtot, Melanie; Jeanson, Francis; Konopko, Melissa A.; Kuba, Martin; Lawson, Jonathan; Leinonen, Jaakko; Li, Stephanie; Wang, Vivian Ota; Philippakis, Anthony A.; Reinold, Kathy; Rushton, Gregory A.; Spalding, J. Dylan; Tornroos, Juha; Tulchinsky, Ilya; Auvil, Jaime M. Guidry; Nyronen, Tommi H. Share Save Leveraging European infrastructures to access 1 million human genomes by 2022 (vol 20, pg 693, 2019)Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Beroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Soren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M.; Korbel, Jan O.; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th.; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyronen, Tommi; Page, Angela; Persson, Bengt; Palotie, Aarno; Parkinson, Helen; Rambla, Jordi; Salgado, David; Steinfelder, Erik; Swertz, Morris A.; Valencia, Alfonso; Varma, Susheel; Blomberg, Niklas; Scollen, Serena Share Save Leveraging European infrastructures to access 1 million human genomes by 2022Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Beroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Soren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M.; Korbel, Jan O.; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th.; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyronen, Tommi; Page, Angela; Persson, Bengt; Palotie, Aarno; Parkinson, Helen; Rambla, Jordi; Salgado, David; Steinfelder, Erik; Swertz, Morris A.; Valencia, Alfonso; Varma, Susheel; Blomberg, Niklas; Scollen, Serena Share Save The bio.tools registry of software tools and data resources for the life sciencesIson, Jon; Ienasescu, Hans; Chmura, Piotr; Rydza, Emil; Menager, Herve; Kalas, Matus; Schwammle, Veit; Gruening, Bjoern; Beard, Niall; Lopez, Rodrigo; Duvaud, Severine; Stockinger, Heinz; Persson, Bengt; Varekova, Radka Svobodova; Racek, Tomas; Vondrasek, Jiri; Peterson, Hedi; Salumets, Ahto; Jonassen, Inge; Hooft, Rob; Nyronen, Tommi; Valencia, Alfonso; Capella, Salvador; Gelpi, Josep; Zambelli, Federico; Savakis, Babis; Leskosek, Brane; Rapacki, Kristoffer; Blanchet, Christophe; Jimenez, Rafael; Oliveira, Arlindo; Vriend, Gert; Collin, Olivier; van Helden, Jacques; Longreen, Peter; Brunak, Soren Share Save Registered access: authorizing data accessDyke, Stephanie O. M.; Linden, Mikael; Lappalainen, Ilkka; Rambla De Argila, Jordi; Carey, Knox; Lloyd, David; Spalding, J. Dylan; Cabili, Moran N.; Kerry, Giselle; Foreman, Julia; Cutts, Tim; Shabani, Mahsa; Rodriguez, Laura L.; Haeussler, Maximilian; Walsh, Brian; Jiang, Xiaoqian; Wang, Shuang; Perrett, Daniel; Boughtwood, Tiffany; Matern, Andreas; Brookes, Anthony J.; Cupak, Miro; Fiume, Marc; Pandya, Ravi; Tulchinsky, Ilia; Scollen, Serena; Tornroos, Juha; Das, Samir; Evans, Alan C.; Malin, Bradley A.; Beck, Stephan; Brenner, Steven E.; Nyronen, Tommi; Blomberg, Niklas; Firth, Helen V.; Hurles, Matthew; Philippakis, Anthony A.; Ratsch, Gunnar; Brudno, Michael; Boycott, Kym M.; Rehm, Heidi L.; Baudis, Michael; Sherry, Stephen T.; Kato, Kazuto; Knoppers, Bartha M.; Baker, Dixie; Flicek, Paul Share Save Orchestrating differential data access for translational research: a pilot implementationBrandizi, Marco; Melnichuk, Olga; Bild, Raffael; Kohlmayer, Florian; Rodriguez-Castro, Benedicto; Spengler, Helmut; Kuhn, Klaus A.; Kuchinke, Wolfgang; Ohmann, Christian; Mustonen, Timo; Linden, Mikael; Nyronen, Tommi; Lappalainen, Ilkka; Brazma, Alvis; Sarkans, Ugis Share Save Share Save Best practices in bioinformatics training for life scientistsVia, Allegra; Blicher, Thomas; Bongcam-Rudloff, Erik; Brazas, Michelle D.; Brooksbank, Cath; Budd, Aidan; De Las Rivas, Javier; Dreyer, Jacqueline; Fernandes, Pedro L.; van Gelder, Celia; Jacob, Joachim; Jimenez, Rafael C.; Loveland, Jane; Moran, Federico; Mulder, Nicola; Nyroenen, Tommi; Rother, Kristian; Schneider, Maria Victoria; Attwood, Teresa K. Share Save Bioinformatics Training Network (BTN): a community resource for bioinformatics trainersSchneider, Maria V.; Walter, Peter; Blatter, Marie-Claude; Watson, James; Brazas, Michelle D.; Rother, Kristian; Budd, Aidan; Via, Allegra; van Gelder, CeliaW. G.; Jacob, Joachim; Fernandes, Pedro; Nyroenen, Tommi H.; De Las Rivas, Javier; Blicher, Thomas; Jimenez, Rafael C.; Loveland, Jane; McDowall, Jennifer; Jones, Phil; Vaughan, BrendanW.; Lopez, Rodrigo; Attwood, Teresa K.; Brooksbank, Catherine Share Save Bioinformatics training: a review of challenges, actions and support requirementsSchneider, Maria Victoria; Watson, James; Attwood, Teresa; Rother, Kristian; Budd, Aidan; McDowall, Jennifer; Via, Allegra; Fernandes, Pedro; Nyronen, Tommy; Blicher, Thomas; Jones, Phil; Blatter, Marie-Claude; De las Rivas, Javier; Judge, David Phillip; van der Gool, Wouter; Brooksbank, Cath Share Save Share Save Share Save Small molecule designed to target metal binding site in the α2I domain inhibits integrin functionKapyla, Jarmo; Pentikainen, Olli T.; Nyronen, Tommi; Nissinen, Liisa; Lassander, Sanna; Jokinen, Johanna; Lahti, Matti; Marjamaki, Anne; Johnson, Mark S.; Heino, Jyrki Share Save Share Save Share Save 
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