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Yana Bromberg

department of biology

38H-index
167Paper Count
6.4KCitation Count
Published Papers 69
Publication Date
Whole metagenome sequencing: not deep enough for complete microbial function recovery
err2026-06-25
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errOAAI
errJia Liu; Modupe Oluseun Coker; Nosayaba Osazuwa-Peters; Oluwaseun Peter; Nosakhare Lawrence Idemudia; Nicolas F. Schlecht; Ozoemene Obuekwe; Fidelis E. Eki-Udoko; Yana Bromberg
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An interdisciplinary perspective of the built-environment microbiome
err2024-12-19
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errOAAI
errMcalister, John S.; Blum, Michael J.; Bromberg, Yana; Fefferman, Nina H.; He, Qiang; Lofgren, Eric; Miller, Debra L.; Schreiner, Courtney; Candan, K. Selcuk; Szabo-Rogers, Heather; Reed, J. Michael
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Variant Effect Prediction in the Age of Machine Learning
err2024-04-15
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PREAI
errBromberg, Yana; Prabakaran, R.; Kabir, Anowarul; Shehu, Amarda
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CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
err2024-02-22
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errOAAI
errJain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult, John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Diez, Orland; Gutierrez-Enriquez, Sara; Fernandez, Alejandro; Montalban, Gemma; Ootes, Lars; Ozkan, Selen; Padilla, Natalia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Celik, Muhammed H.; Thi Yen Duong Nguyen; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Goke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O'Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gokcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Kramer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Izila; Holtzer, Iamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Valiaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Mort, Matthew; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Loescher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; LeBowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Bus-Ije, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Ioldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; McCombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Tavtigian, Sean V.; Cole, Alina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; McInnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Cline, Melissa S.; Pandey, Gaurav; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Clark, Wyatt T.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Tavtigian, Sean V.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Church, George M.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O'Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Tavtigian, Sean V.; Veltman, Joris; Zook, Justin M.
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A New Paradigm for Pandemic Preparedness
err2023-11-09
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errOAAI
errFefferman, Nina H.; Mcalister, John S.; Akpa, Belinda S.; Akwataghibe, Kelechi; Azad, Fahim Tasneema; Barkley, Katherine; Bleichrodt, Amanda; Blum, Michael J.; Bourouiba, L.; Bromberg, Yana; Candan, K. Selcuk; Chowell, Gerardo; Clancey, Erin; Cothran, Fawn A.; DeWitte, Sharon N.; Fernandez, Pilar; Finnoff, David; Flaherty, D. T.; Gibson, Nathaniel L.; Harris, Natalie; He, Qiang; Lofgren, Eric T.; Miller, Debra L.; Moody, James; Muccio, Kaitlin; Nunn, Charles L.; Papes, Monica; Paschalidis, Ioannis Ch.; Pasquale, Dana K.; Reed, J. Michael; Rogers, Matthew B.; Schreiner, Courtney L.; Strand, Elizabeth B.; Swanson, Clifford S.; Szabo-Rogers, Heather L.; Ryan, Sadie J.
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Learning from the unknown: exploring the range of bacterial functionality
err2023-09-22
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errMahlich, Yannick; Zhu, Chengsheng; Chung, Henri; Velaga, Pavan K.; Kaluza, M. Clara De Paolis; Radivojac, Predrag; Friedberg, Iddo; Bromberg, Yana
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Computational interpretation of human genetic variation
err2022-09-23
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errOAAI
errBromberg, Yana; Radivojac, Predrag
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Predicting embryonic aneuploidy rate in IVF patients using whole-exome sequencing
err2022-03-26
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errSun, Siqi; Miller, Maximilian; Wang, Yanran; Tyc, Katarzyna M.; Cao, Xiaolong; Scott, Richard T., Jr.; Tao, Xin; Bromberg, Yana; Schindler, Karen; Xing, Jinchuan
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Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer
err2022-01-14
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errOAAI
errBromberg, Yana; Aptekmann, Ariel A.; Mahlich, Yannick; Cook, Linda; Senn, Stefan; Miller, Maximillian; Nanda, Vikas; Ferreiro, Diego U.; Falkowski, Paul G.
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Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility (vol 10, 1, 2016)
err2021-12-30
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errOAAI
errBruse, Shannon; Moreau, Michael; Bromberg, Yana; Jang, Jun-Ho; Wang, Nan; Ha, Hongseok; Picchi, Maria; Lin, Yong; Langley, Raymond J.; Qualls, Clifford; Klesney-Tait, Julia; Zabner, Joseph; Leng, Shuguang; Mao, Jenny; Belinsky, Steven A.; Xing, Jinchuan; Nyunoya, Toru
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Decoding the effects of synonymous variants
err2021-11-30
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errOAAI
errZeng, Zishuo; Aptekmann, Ariel A.; Bromberg, Yana
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Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic
err2021-10-09
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errLubin, Joseph H.; Zardecki, Christine; Dolan, Elliott M.; Lu, Changpeng; Shen, Zhuofan; Dutta, Shuchismita; Westbrook, John D.; Hudson, Brian P.; Goodsell, David S.; Williams, Jonathan K.; Voigt, Maria; Sarma, Vidur; Xie, Lingjun; Venkatachalam, Thejasvi; Arnold, Steven; Alvarado, Luz Helena Alfaro; Catalfano, Kevin; Khan, Aaliyah; McCarthy, Erika; Staggers, Sophia; Tinsley, Brea; Trudeau, Alan; Singh, Jitendra; Whitmore, Lindsey; Zheng, Helen; Benedek, Matthew; Currier, Jenna; Dresel, Mark; Duvvuru, Ashish; Dyszel, Britney; Fingar, Emily; Hennen, Elizabeth M.; Kirsch, Michael; Khan, Ali A.; Labrie-Cleary, Charlotte; Laporte, Stephanie; Lenkeit, Evan; Martin, Kailey; Orellana, Marilyn; de la Campa, Melanie Ortiz-Alvarez; Paredes, Isaac; Wheeler, Baleigh; Rupert, Allison; Sam, Andrew; See, Katherine; Zapata, Santiago Soto; Craig, Paul A.; Hall, Bonnie L.; Jiang, Jennifer; Koeppe, Julia R.; Mills, Stephen A.; Pikaart, Michael J.; Roberts, Rebecca; Bromberg, Yana; Hoyer, J. Steen; Duffy, Siobain; Tischfield, Jay; Ruiz, Francesc X.; Arnold, Eddy; Baum, Jean; Sandberg, Jesse; Brannigan, Grace; Khare, Sagar D.; Burley, Stephen K.
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PredictProtein - Predicting Protein Structure and Function for 29 Years
err2021-05-17
err160
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errBernhofer, Michael; Dallago, Christian; Karl, Tim; Satagopam, Venkata; Heinzinger, Michael; Littmann, Maria; Olenyi, Tobias; Qiu, Jiajun; Schuetze, Konstantin; Yachdav, Guy; Ashkenazy, Haim; Ben-Tal, Nir; Bromberg, Yana; Goldberg, Tatyana; Kajan, Laszlo; O'Donoghue, Sean; Sander, Chris; Schafferhans, Andrea; Schlessinger, Avner; Vriend, Gerrit; Mirdita, Milot; Gawron, Piotr; Gu, Wei; Jarosz, Yohan; Trefois, Christophe; Steinegger, Martin; Schneider, Reinhard; Rost, Burkhard
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Low Diversity of Human Variation Despite Mostly Mild Functional Impact of De Novo Variants
err2021-03-18
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errOAAI
errMahlich, Yannick; Miller, Maximillian; Zeng, Zishuo; Bromberg, Yana
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