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O

Ole Lund

technical university of denmark

98H-index
485Paper Count
5.8WCitation Count
Published Papers 116
Publication Date
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MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies
errNATURE COMMUNICATIONS
IF15.7
err2024-07-09
err0
errOAAI
errZachariasen, Trine; Russel, Jakob; Petersen, Charisse; Vestergaard, Gisle A.; Shah, Shiraz; Atienza Lopez, Pablo; Passali, Moschoula; Turvey, Stuart E.; Sorensen, Soren J.; Lund, Ole; Stokholm, Jakob; Brejnrod, Asker; Thorsen, Jonathan
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errSave
Chenopodium quinoa, a New Host for Alternaria Section Alternata and Alternaria Section Infectoriae Causing Yellow Leaf Blotch Disease
errPLANT DISEASE
IF4.4
err2023-09-01
err4
PREAI
errColque-Little, Carla; Lund, Ole Sogaard; Andreasen, Christian; Amby, Daniel Buchvaldt
errShare
errSave
Deep integrative models for large-scale human genomics
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-05-24
err7
errOAAI
errSigurdsson, Arnor, I; Louloudis, Ioannis; Banasik, Karina; Westergaard, David; Winther, Ole; Lund, Ole; Ostrowski, Sisse Rye; Erikstrup, Christian; Pedersen, Ole Birger Vesterager; Nyegaard, Mette; Brunak, Soren; Vilhjalmsson, Bjarni J.; Rasmussen, Simon
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The enhancing effect of intercropping sugar beet with chicory on the deep root growth and nutrient uptake
errAGRICULTURE ECOSYSTEMS & ENVIRONMENT
IF6.4
err2023-05-01
err7
errOAAI
errCzaban, Weronika; Han, Eusun; Lund, Ole Sogaard; Stokholm, Michaela Schiller; Jensen, Signe Marie; Thorup-Kristensen, Kristian
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errSave
SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies
errMICROBIOLOGY SPECTRUM
IF3.8
err2022-12-21
err4
errOAAI
errAytan-Aktug, Derya; Grigorjev, Vladislav; Szarvas, Judit; Clausen, Philip T. L. C.; Munk, Patrick; Nguyen, Marcus; Davis, James J.; Aarestrup, Frank M.; Lund, Ole
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errSave
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest
errMSYSTEMS
IF4.6
err2022-04-26
err11
errOAAI
errAytan-Aktug, Derya; Clausen, Philip T. L. C.; Szarvas, Judit; Munk, Patrick; Otani, Saria; Nguyen, Marcus; Davis, James J.; Lund, Ole; Aarestrup, Frank M.
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errSave
Predicting Antimicrobial Resistance Using Partial Genome Alignments
errMSYSTEMS
IF4.6
err2021-06-29
err13
errOAAI
errAytan-Aktug, D.; Nguyen, M.; Clausen, P. T. L. C.; Stevens, R. L.; Aarestrup, F. M.; Lund, O.; Davis, J. J.
errShare
errSave
Rapid Open-Source SNP-Based Clustering Offers an Alternative to Core Genome MLST for Outbreak Tracing in a Hospital Setting
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2021-04-01
err5
errOAAI
errSzarvas, Judit; Bartels, Mette Damkjaer; Westh, Henrik; Lund, Ole
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errSave
Genetic variation for tolerance to the downy mildew pathogen Peronospora variabilis in genetic resources of quinoa (Chenopodium quinoa)
errBMC PLANT BIOLOGY
IF4.8
err2021-01-14
err32
errOAAI
errColque-Little, Carla; Abondano, Miguel Correa; Lund, Ole Sogaard; Amby, Daniel Buchvaldt; Piepho, Hans-Peter; Andreasen, Christian; Schmoeckel, Sandra; Schmid, Karl
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errSave
AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides
errSCIENTIFIC REPORTS
IF3.9
err2020-12-08
err102
errOAAI
errOlsen, Tobias Hegelund; Yesiltas, Betul; Marin, Frederikke Isa; Pertseva, Margarita; Garcia-Moreno, Pedro J.; Gregersen, Simon; Overgaard, Michael Toft; Jacobsen, Charlotte; Lund, Ole; Hansen, Egon Bech; Marcatili, Paolo
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errSave
In Silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data
errJOURNAL OF CLINICAL MICROBIOLOGY
IF5.4
err2020-09-22
err281
errOAAI
errTetzschner, Anna Maria Malberg; Johnson, James R.; Johnston, Brian D.; Lund, Ole; Scheutz, Flemming
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errSave
Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning
errSCIENTIFIC REPORTS
IF3.9
err2020-09-14
err27
errOAAI
errPataki, Balint Armin; Matamoros, Sebastien; van der Putten, Boas C. L.; Remondini, Daniel; Giampieri, Enrico; Aytan-Aktug, Derya; Hendriksen, Rene S.; Lund, Ole; Csabai, Istvan; Schultsz, Constance
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errSave
ResFinder 4.0 for predictions of phenotypes from genotypes
errJOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
IF3.6
err2020-08-11
err1.9K
errOAAI
errBortolaia, Valeria; Kaas, Rolf S.; Ruppe, Etienne; Roberts, Marilyn C.; Schwarz, Stefan; Cattoir, Vincent; Philippon, Alain; Allesoe, Rosa L.; Rebelo, Ana Rita; Florensa, Alfred Ferrer; Fagelhauer, Linda; Chakraborty, Trinad; Neumann, Bernd; Werner, Guido; Bender, Jennifer K.; Stingl, Kerstin; Minh Nguyen; Coppens, Jasmine; Xavier, Basil Britto; Malhotra-Kumar, Surbhi; Westh, Henrik; Pinholt, Mette; Anjum, Muna F.; Duggett, Nicholas A.; Kempf, Isabelle; Nykasenoja, Suvi; Olkkola, Satu; Wieczorek, Kinga; Amaro, Ana; Clemente, Lurdes; Mossong, Joel; Losch, Serge; Ragimbeau, Catherine; Lund, Ole; Aarestrup, Frank M.
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An interactive database for the investigation of high-density peptide microarray guided interaction patterns and antivenom cross-reactivity
errPLOS NEGLECTED TROPICAL DISEASES
IF3.4
err2020-06-24
err12
errOAAI
errKrause, Kamille E.; Jenkins, Timothy P.; Skaarup, Carina; Engmark, Mikael; Casewell, Nicholas R.; Ainsworth, Stuart; Lomonte, Bruno; Fernandez, Julian; Gutierrez, Jose M.; Lund, Ole; Laustsen, Andreas H.
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errSave
Life history and temperature-dependence of cassava-colonising populations ofBemisia tabaci
errJOURNAL OF PEST SCIENCE
IF4.1
err2020-06-17
err20
PREAI
errAregbesola, O. Z.; Legg, J. P.; Lund, O. S.; Sigsgaard, L.; Sporleder, M.; Carhuapoma, P.; Rapisarda, C.
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errSave
Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences
errMICROBIAL GENOMICS
IF4
err2020-05-01
err6
errOAAI
errMatamoros, Sebastien; Hendriksen, Rene S.; Pataki, Balint Armin; Pakseresht, Nima; Rossello, Marc; Silvester, Nicole; Amid, Clara; Aarestrup, Frank M.; Koopmans, Marion; Cochrane, Guy; Csabai, Istvan; Lund, Ole; Schultsz, Constance
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errSave
CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data
errGENOME BIOLOGY
IF9.4
err2020-04-28
err88
errOAAI
errMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.
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errSave
Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform
errCOMMUNICATIONS BIOLOGY
IF5.1
err2020-03-20
err9
errOAAI
errSzarvas, Judit; Ahrenfeldt, Johanne; Cisneros, Jose Luis Bellod; Thomsen, Martin Christen Frolund; Aarestrup, Frank M.; Lund, Ole
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errSave
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
errSCIENTIFIC REPORTS
IF3.9
err2020-02-20
err6
errOAAI
errAhrenfeldt, Johanne; Waisi, Madina; Loft, Isabella C.; Clausen, Philip T. L. C.; Allesoe, Rosa; Szarvas, Judit; Hendriksen, Rene S.; Aarestrup, Frank M.; Lund, Ole
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errSave
Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks
errMSYSTEMS
IF4.6
err2020-02-11
err23
errOAAI
errAytan-Aktug, D.; Clausen, P. T. L. C.; Bortolaia, V; Aarestrup, F. M.; Lund, O.
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
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Peer Bork
H-index: 233 · Papers: 948
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王军 (Jun Wang)
H-index: 222 · Papers: 3.2K
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H-index: 174 · Papers: 1.4K
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Edward C. Holmes
H-index: 165 · Papers: 1.2K
O
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