John K. Mich - Publications, H-index & Citations

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John K. Mich

Allen Institute for Brain Science

20H-index

50Paper Count

1.7KCitation Count

Published Papers 20

Publication Date

Technical and biological sources of noise confound multiplexed enhancer AAV screening

Nature Communications

IF15.7

2026-04-28

OAAI

Avery C. Hunker; John K. Mich; Naz Taskin; Amy Torkelson; Trangthanh Cardenas; Jean-Benoît Lalanne; Joseph T. Mahoney; Darren Bertagnolli; Anish Bhaswanth Chakka; Rushil Chakrabarty; Nicholas P. Donadio; Rebecca Ferrer; Molly Gasperini; Jeff Goldy; Junitta Guzman; Kelly Jin; Shannon Khem; Rana Kutsal; Refugio A. Martinez; Dakota Newman; Nick Pena; Christine Rimorin; Dana Rocha; Nadiya V. Shapovalova; Michael Tieu; Natalie Weed; Thomas Zhou; Rebecca Hodge; Shenqin Yao; Jay Shendure; Kimberly A. Smith; Ed S. Lein; Bosiljka Tasic; Boaz P. Levi; Jonathan T. Ting

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Pool-packaged AAV libraries exhibit extensive length-dependent and homology-dependent chimerism

Nature Biotechnology

IF41.7

2026-04-28

OAAI

Jean-Benoît Lalanne; Chau Huynh; John K. Mich; Avery C. Hunker; Troy A. McDiarmid; Haedong Kim; Boaz P. Levi; Jonathan T. Ting; Jay Shendure

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AAV delivery of full length SYNGAP1 rescues epileptic and behavioral phenotypes in a mouse model of SYNGAP1-related disorders

Molecular Therapy

IF12

2025-09-23

OAAI

Meagan A. Quinlan; Rong Guo; Andrew G. Clark; Emily M. Luber; Robert J. Christian; Refugio A. Martinez; Erin L. Groce; Jiatai Liu; Yemeserach M. Bishaw; Ravi Bhowmik; Elizabeth Liang; Melissa Reding; Kara Ronellenfitch; Vonn Wright; Kathryn M. Gudsnuk; Jennifer M. Leedy; John K. Mich; Bryan B. Gore; Tanya L. Daigle; Manuel E. Lopez; Ed S. Lein; Justin K. Ichida; Boaz P. Levi

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Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

Cell Genomics

IF9

2025-05-21

OAAI

Nelson J. Johansen; Niklas Kempynck; Nathan R. Zemke; Saroja Somasundaram; Seppe De Winter; Marcus Hooper; Deepanjali Dwivedi; Ruchi Lohia; Fabien Wehbe; Bocheng Li; Darina Abaffyová; Ethan J. Armand; Julie De Man; Eren Can Ekşi; Nikolai Hecker; Gert Hulselmans; Vasilis Konstantakos; David Mauduit; John K. Mich; Gabriele Partel; Trygve E. Bakken

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Interneuron-specific dual-AAV SCN1A gene replacement corrects epileptic phenotypes in mouse models of Dravet syndrome

SCIENCE TRANSLATIONAL MEDICINE

IF14.6

2025-03-19

PREAI

Mich, John K.; Ryu, Jiyun; Wei, Aguan D.; Gore, Bryan B.; Guo, Rong; Bard, Angela M.; Martinez, Refugio A.; Luber, Emily M.; Liu, Jiatai; Bishaw, Yemeserach M.; Christian, Robert J.; Oliveira, Luiz M.; Miranda, Nicole; Ramirez, Jan-Marino; Ting, Jonathan T.; Lein, Ed S.; Levi, Boaz P.

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A versatile cell line for establishing potency of cell type-specific AAV transgenes

MOLECULAR THERAPY METHODS & CLINICAL DEVELOPMENT

IF4.7

2025-03-01

OAAI

Martinez, Refugio A.; Bishaw, Yemeserach M.; Quinlan, Meagan A.; Groce, Erin L.; Gore, Bryan B.; Lein, Ed S.; Mich, John K.; Levi, Boaz P.

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Adeno-associated viral vectors for functional intravenous gene transfer throughout the non-human primate brain

NATURE NANOTECHNOLOGY

IF34.9

2023-07-10

OAAI

Chuapoco, Miguel R.; Flytzanis, Nicholas C.; Goeden, Nick; Octeau, J. Christopher; Roxas, Kristina M.; Chan, Ken Y.; Scherrer, Jon; Winchester, Janet; Blackburn, Roy J.; Campos, Lillian J.; Man, Kwun Nok Mimi; Sun, Junqing; Chen, Xinhong; Lefevre, Arthur; Singh, Vikram Pal; Arokiaraj, Cynthia M.; Shay, Timothy F.; Vendemiatti, Julia; Jang, Min J.; Mich, John K.; Bishaw, Yemeserach; Gore, Bryan B.; Omstead, Victoria; Taskin, Naz; Weed, Natalie; Levi, Boaz P.; Ting, Jonathan T.; Miller, Cory T.; Deverman, Benjamin E.; Pickel, James; Tian, Lin; Fox, Andrew S.; Gradinaru, Viviana

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Functional gene delivery to and across brain vasculature of systemic AAVs with endothelial-specific tropism in rodents and broad tropism in primates

NATURE COMMUNICATIONS

IF15.7

2023-06-08

OAAI

Chen, Xinhong; Wolfe, Damien A.; Bindu, Dhanesh Sivadasan; Zhang, Mengying; Taskin, Naz; Goertsen, David; Shay, Timothy F.; Sullivan, Erin E.; Huang, Sheng-Fu; Kumar, Sripriya Ravindra; Arokiaraj, Cynthia M.; Plattner, Viktor M.; Campos, Lillian J.; Mich, John K.; Monet, Deja; Ngo, Victoria; Ding, Xiaozhe; Omstead, Victoria; Weed, Natalie; Bishaw, Yeme; Gore, Bryan B.; Lein, Ed S.; Akrami, Athena; Miller, Cory; Levi, Boaz P.; Keller, Annika; Ting, Jonathan T.; Fox, Andrew S.; Eroglu, Cagla; Gradinaru, Viviana

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Enhancer viruses for combinatorial cell-subclass-specific labeling

NEURON

IF15

2021-05-01

OAAI

Graybuck, Lucas T.; Daigle, Tanya L.; Sedeno-Cortes, Adriana E.; Walker, Miranda; Kalmbach, Brian; Lenz, Garreck H.; Morin, Elyse; Thuc Nghi Nguyen; Garren, Emma; Bendrick, Jacqueline L.; Kim, Tae Kyung; Zhou, Thomas; Mortrud, Marty; Yao, Shenqin; Siverts, La' Akea; Larsen, Rachael; Gore, Bryan B.; Szelenyi, Eric R.; Trader, Cameron; Balaram, Pooja; van Velthoven, Cindy T. J.; Chiang, Megan; Mich, John K.; Dee, Nick; Goldy, Jeff; Cetin, Ali H.; Smith, Kimberly; Way, Sharon W.; Esposito, Luke; Yao, Zizhen; Gradinaru, Viviana; Sunkin, Susan M.; Lein, Ed; Levi, Boaz P.; Ting, Jonathan T.; Zeng, Hongkui; Tasic, Bosiljka

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Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

CELL REPORTS

IF6.9

2021-03-01

OAAI

Mich, John K.; Graybuck, Lucas T.; Hess, Erik E.; Mahoney, Joseph T.; Kojima, Yoshiko; Ding, Yi; Somasundaram, Saroja; Miller, Jeremy A.; Kalmbach, Brian E.; Radaelli, Cristina; Gore, Bryan B.; Weed, Natalie; Omstead, Victoria; Bishaw, Yemeserach; Shapovalova, Nadiya, V; Martinez, Refugio A.; Fong, Olivia; Yao, Shenqin; Mortrud, Marty; Chong, Peter; Loftus, Luke; Bertagnolli, Darren; Goldy, Jeff; Casper, Tamara; Dee, Nick; Opitz-Araya, Ximena; Cetin, Ali; Smith, Kimberly A.; Gwinn, Ryder P.; Cobbs, Charles; Ko, Andrew L.; Ojemann, Jeffrey G.; Keene, C. Dirk; Silbergeld, Daniel L.; Sunkin, Susan M.; Gradinaru, Viviana; Horwitz, Gregory D.; Zeng, Hongkui; Tasic, Bosiljka; Lein, Ed S.; Ting, Jonathan T.; Levi, Boaz P.

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Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation (vol 93, pg 1035, 2017)

NEURON

IF15

2017-11-01

OAAI

Close, Jennie L.; Yao, Zizhen; Levi, Boaz P.; Miller, Jeremy A.; Bakken, Trygve E.; Menon, Vilas; Ting, Jonathan T.; Wall, Abigail; Krostag, Anne-Rachel; Thomsen, Elliot R.; Nelson, Angel M.; Mich, John K.; Hodge, Rebecca D.; Shehata, Soraya I.; Glass, Ian A.; Bort, Susan; Shapovalova, Nadiya V.; Ngo, N. Kiet; Grimley, Joshua S.; Phillips, John W.; Thompson, Carol L.; Ramanathan, Sharad; Lein, Ed

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Putting Two Heads Together to Build a Better Brain

CELL STEM CELL

IF20.4

2017-09-01

OAAI

Mich, John K.; Close, Jennie L.; Levi, Boaz P.

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Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation

NEURON

IF15

2017-03-01

OAAI

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A Single-Cell Roadmap of Lineage Bifurcation in Human ESC Models of Embryonic Brain Development

CELL STEM CELL

IF20.4

2017-01-01

112

OAAI

Yao, Zizhen; Mich, John K.; Ku, Sherman; Menon, Vilas; Krostag, Anne-Rachel; Martinez, Refugio A.; Furchtgott, Leon; Mulholland, Heather; Bort, Susan; Fuqua, Margaret A.; Gregor, Ben W.; Hodge, Rebecca D.; Jayabalu, Anu; May, Ryan C.; Melton, Samuel; Nelson, Angelique M.; Ngo, N. Kiet; Shapovalova, Nadiya V.; Shehata, Soraya I.; Smith, Michael W.; Tait, Leah J.; Thompson, Carol L.; Thomsen, Elliot R.; Ye, Chaoyang; Glass, Ian A.; Kaykas, Ajamete; Yao, Shuyuan; Phillips, John W.; Grimley, Joshua S.; Levi, Boaz P.; Wang, Yanling; Ramanathan, Sharad

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Fixed single-cell transcriptomic characterization of human radial glial diversity

NATURE METHODS

IF32.1

2015-11-16

205

OAAI

Thomsen, Elliot R.; Mich, John K.; Yao, Zizhen; Hodge, Rebecca D.; Doyle, Adele M.; Jang, Sumin; Shehata, Soraya I.; Nelson, Angelique M.; Shapovalova, Nadiya V.; Levi, Boaz P.; Ramanathan, Sharad

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Arhgap36-dependent activation of Gli transcription factors

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2014-07-14

OAAI

Rack, Paul G.; Ni, Jun; Payumo, Alexander Y.; Nguyen, Vien; Crapster, J. Aaron; Hovestadt, Volker; Kool, Marcel; Jones, David T. W.; Mich, John K.; Firestone, Ari J.; Pfister, Stefan M.; Cho, Yoon-Jae; Chen, James K.

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Prospective identification of functionally distinct stem cells and neurosphere-initiating cells in adult mouse forebrain

ELIFE

IF0

2014-05-07

138

OAAI

Mich, John K.; Signer, Robert A. J.; Nakada, Daisuke; Pineda, Andre; Burgess, Rebecca J.; Vue, Tou Yia; Johnson, Jane E.; Morrison, Sean J.

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Hedgehog and retinoic acid signaling cooperate to promote motoneurogenesis in zebrafish

DEVELOPMENT

IF3.6