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Write and Read: Harnessing Synthetic DNA Modifications for Nanopore Sequencing Bertocchi, Uri; Grunwald, Assaf; Goldner, Gal; Eitan, Eliran; Avraham, Sigal; Dvir, Shani; Deek, Jasline; Michaeli, Yael; Yao, Brian; Listgarten, Jennifer; Simpson, Jared T.; Timp, Winston; Ebenstein, Yuval Share Save
SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes Nasir, Jalees A.; Maguire, Finlay; Smith, Kendrick M.; Panousis, Emily M.; Baker, Sheridan J. C.; Aftanas, Patryk; Raphenya, Amogelang R.; Alcock, Brian P.; Maan, Hassaan; Knox, Natalie C.; Banerjee, Arinjay; Mossman, Karen; Wang, Bo; Simpson, Jared T.; Kozak, Robert A.; Mubareka, Samira; Mcarthur, Andrew G. Share Save
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Characterizing Risk Factors for Hospitalization and Clinical Characteristics in a Cohort of COVID-19 Patients Enrolled in the GENCOV Study Morgan, Gregory; Casalino, Selina; Chowdhary, Sunakshi; Frangione, Erika; Fung, Chun Yiu Jordan; Haller, Simona; Lapadula, Elisa; Scott, Mackenzie; Wolday, Dawit; Young, Juliet; Arnoldo, Saranya; Aujla, Navneet; Bearss, Erin; Binnie, Alexandra; Bombard, Yvonne; Borgundvaag, Bjug; Briollais, Laurent; Dagher, Marc; Devine, Luke; Faghfoury, Hanna; Friedman, Steven M.; Gingras, Anne-Claude; Goneau, Lee W.; Khan, Zeeshan; Mazzulli, Tony; Mcleod, Shelley L.; Nomigolzar, Romina; Noor, Abdul; Pugh, Trevor J.; Richardson, David; Satnam Singh, Harpreet Kaur; Simpson, Jared; Stern, Seth; Strug, Lisa; Taher, Ahmed; Lerner-Ellis, Jordan; Taher, Jennifer Share Save
A Novel Approach to Detect IDH Point Mutations in Gliomas Using Nanopore Sequencing Test Validation for the Clinical Laboratory Mimosa, Mashiat L.; Al-ameri, Wafa; Simpson, Jared T.; Nakhla, Michael; Boissinot, Karel; Munoz, David G.; Das, Sunit; Feilotter, Harriet; Fattouh, Ramzi; Saleeb, Rola M. Share Save
Genome screening, reporting, and genetic counseling for healthy populations Casalino, Selina; Frangione, Erika; Chung, Monica; MacDonald, Georgia; Chowdhary, Sunakshi; Mighton, Chloe; Faghfoury, Hanna; Bombard, Yvonne; Strug, Lisa; Pugh, Trevor J.; Simpson, Jared; Arnoldo, Saranya; Aujla, Navneet; Bearss, Erin; Binnie, Alexandra; Borgundvaag, Bjug; Chertkow, Howard; Clausen, Marc; Dagher, Marc; Devine, Luke; Di Iorio, David; Friedman, Steven Marc; Fung, Chun Yiu Jordan; Gingras, Anne-Claude; Goneau, Lee W.; Kaushik, Deepanjali; Khan, Zeeshan; Lapadula, Elisa; Lu, Tiffany; Mazzulli, Tony; McGeer, Allison; McLeod, Shelley L.; Morgan, Gregory; Richardson, David; Singh, Harpreet; Stern, Seth; Taher, Ahmed; Wong, Iris; Zarei, Natasha; Greenfeld, Elena; Hao, Limin; Lebo, Matthew; Lane, William; Noor, Abdul; Taher, Jennifer; Lerner-Ellis, Jordan Share Save
Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada (vol 12, 10867, 2022) Isabel, Sandra; Abdulnoor, Mariana; Boissinot, Karel; Isabel, Marc R.; de Borja, Richard; Zuzarte, Philip C.; Sjaarda, Calvin P.; Barker, Kevin R.; Sheth, Prameet M.; Matukas, Larissa M.; Gubbay, Jonathan B.; McGeer, Allison J.; Mubareka, Samira; Simpson, Jared T.; Fattouh, Ramzi Share Save
Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada Isabel, Sandra; Abdulnoor, Mariana; Boissinot, Karel; Isabel, Marc R.; de Borja, Richard; Zuzarte, Philip C.; Sjaarda, Calvin P.; Barker, Kevin R.; Sheth, Prameet M.; Matukas, Larissa M.; Gubbay, Jonathan B.; McGeer, Alisson J.; Mubareka, Samira; Simpson, Jared T.; Fattouh, Ramzi Share Save
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Return of genome sequencing results in ostensibly healthy COVID-19 positive individuals: GENCOV Study Canada Casalino, Selina; Mighton, Chloe; Clausen, Marc; Frangione, Erika; Chowdhary, Sunakshi; Chung, Monica; Fung, Chun Yiu Jordan; Morgan, Greg; MacDonald, Georgia; Lapadula, Elisa; Faghfoury, Hanna; Arnoldo, Saranya; Bearss, Erin; Binnie, Alexandra; Borgundvaag, Bjug; Chertkow, Howard; Devine, Luke; Friedmen, Steven Marc; Gingras, Anne-Claude; Khan, Zeeshan; Mazzulli, Tony; McGeer, Allison; McLeod, Shelley; Pugh, Trevor; Richardson, David; Simpson, Jared; Stern, Seth; Strug, Lisa; Taher, Ahmed; Wong, Iris; Zarei, Natasha; Kaushik, Deepanjali; Goneau, Lee; Dagher, Marc; Noor, Abdul; Greenfeld, Elena; Bombard, Yvonne; Taher, Jennifer; Lerner-Ellis, Jordan Share Save
Medically actionable DNA variation from the GENCOV COVID-19 Genome Sequencing Study Frangione, Erika; Chung, Monica; Mighton, Chloe; Casalino, Selina; Chowdhary, Sunakshi; Singh, Harpreet Kaur Satnam; Xu, Linda; Di Iorio, David; Jain, Anjali; Kidwai, Ayesha; Wong, Queenie; Aujla, Navneet; Li, Janice Min; Quraishi, Manal; Morgan, Greg; Clausen, Marc; Fung, Chun Yiu Jordan; MacDonald, Georgia; Lapadula, Elisa; Arnoldo, Saranya; Bearss, Erin; Binnie, Alexandra; Borgundvaag, Bjug; Chertkow, Howard; Devine, Luke; Friedmen, Steven Marc; Gingras, Anne-Claude; Khan, Zeeshan; Mazzulli, Tony; McGeer, Allison; McLeod, Shelley; Pugh, Trevor; Richardson, David; Simpson, Jared; Stern, Seth; Strug, Lisa; Taher, Ahmed; Wong, Iris; Zarei, Natasha; Kaushik, Deepanjali; Goneau, Lee; Dagher, Marc; Greenfeld, Elena; Faghfoury, Hanna; Bombard, Yvonne; Noor, Abdul; Taher, Jennifer; Lerner-Ellis, Jordan Share Save
Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada Sjaarda, Calvin P.; Guthrie, Jennifer L.; Mubareka, Samira; Simpson, Jared T.; Hamelin, Bettina; Wong, Henry; Mortimer, Leanne; Slinger, Robert; McArthur, Andrew G.; Desjardins, Marc; McGeer, Allison; Mazzulli, Tony; Douchant, Katya; Brabant-Kirwan, Danielle; Fattouh, Ramzi; Campigotto, Aaron; Patel, Samir N.; Fittipaldi, Nahuel; Colautti, Robert I.; Shethi, Prameet M. Share Save
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Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing Lee, Isac; Razaghi, Roham; Gilpatrick, Timothy; Molnar, Michael; Gershman, Ariel; Sadowski, Norah; Sedlazeck, Fritz J.; Hansen, Kasper D.; Simpson, Jared T.; Timp, Winston Share Save
Detection of Structural Rearrangements in Embryos Madjunkova, Svetlana; Sundaravadanam, Yogi; Antes, Ran; Abramov, Rina; Chen, Siwei; Yin, Yin; Zuzarte, Philip C.; Moskovtsev, Sergey I.; Jorgensen, Lars G. T.; Baratz, Ari; Simpson, Jared T.; Librach, Clifford Share Save
Candidate Cancer Driver Mutations in Distal Regulatory Elements and Long-Range Chromatin Interaction Networks Zhu, Helen; Uuskula-Reimand, Liis; Isaev, Keren; Wadi, Lina; Alizada, Azad; Shuai, Shimin; Huang, Vincent; Aduluso-Nwaobasi, Dike; Paczkowska, Marta; Abd-Rabbo, Diala; Ocsenas, Oliver; Liang, Minggao; Thompson, J. Drew; Li, Yao; Ruan, Luyao; Krassowski, Michal; Dzneladze, Irakli; Simpson, Jared T.; Lupien, Mathieu; Stein, Lincoln D.; Boutros, Paul C.; Wilson, Michael D.; Reimand, Juri Share Save
A community effort to create standards for evaluating tumor subclonal reconstruction Salcedo, Adriana; Tarabichi, Maxime; Espiritu, Shadrielle Melijah G.; Deshwar, Amit G.; David, Matei; Wilson, Nathan M.; Dentro, Stefan; Wintersinger, Jeff A.; Liu, Lydia Y.; Ko, Minjeong; Sivanandan, Srinivasan; Zhang, Hongjiu; Zhu, Kaiyi; Ou Yang, Tai-Hsien; Chilton, John M.; Buchanan, Alex; Lalansingh, Christopher M.; P'ng, Christine; Anghel, Catalina V.; Umar, Imaad; Lo, Bryan; Zou, William; Simpson, Jared T.; Stuart, Joshua M.; Anastassiou, Dimitris; Guan, Yuanfang; Ewing, Adam D.; Ellrott, Kyle; Wedge, David C.; Morris, Quaid; Van Loo, Peter; Boutros, Paul C.; Jha, Alokkumar; Huang, Tanxiao; Yang, Tsun-Po; Peifer, Martin; Sahinalp, Cenk; Malikic, Salem; Vazquez-Garcia, Ignacio; Mustonen, Ville; Yang, Hsih-Te; Lee, Ken-Ray; Ji, Yuan; Sengupta, Subhajit; Rudewicz, Justine; Nikolski, Macha; Schaeverbeke, Quentin; Yuan, Ke; Markowetz, Florian; Macintyre, Geoff; Cmero, Marek; Chaudhary, Belal; Leshchiner, Ignaty; Livitz, Dimitri; Getz, Gad; Loher, Phillipe; Yu, Kaixian; Wang, Wenyi; Zhu, Hongtu Share Save
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