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Genki Terashi

purdue university

24H-index
165Paper Count
2.2KCitation Count
Published Papers 47
Publication Date
Multivalent recognition of ferritin by full-length NCOA4 enables robust ferritinophagy
err2026-04-27
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PREAI
errAyush K. Srivastava; Genki Terashi; Rosa Viner; Audrey Kishishita; Arun P. Wiita; Anitha Rajendran; Yeonni Zoo; Georgia C. Papaefthymiou; Daisuke Kihara; Fadi Bou-Abdallah
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Ferritin iron uptake and oxidation are dynamically modulated by nucleotide phosphate architecture via electrostatic gating
err2026-02-26
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PREAI
errAnitha Rajendran; Sean Henley; Brent L. Nannenga; Genki Terashi; Ayush Srivastava; Daisuke Kihara; Fadi Bou-Abdallah
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Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16
err2025-11-08
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PREAI
errRachael C. Kretsch; Elisa Posani; Eugene F. Baulin; Janusz M. Bujnicki; Giovanni Bussi; Thomas E. Cheatham III; Shi-Jie Chen; Arne Elofsson; Masoud Amiri Farsani; Olivia N. Fisher; M. Michael Gromiha; Ayush Gupta; Michiaki Hamada; K. Harini; Gang Hu; David Huang; Junichi Iwakiri; Anika Jain; Yuki Kagaya; Daisuke Kihara; Sebastian Kmiecik; Sowmya Ramaswamy Krishnan; Ikuo Kurisaki; Olivier Languin-Cattoën; Jun Li; Shanshan Li; Karim Malekzadeh; Tsukasa Nakamura; Wentao Ni; Chandran Nithin; Michael Z. Palo; Joon Hong Park; Smita P. Pilla; Simón Poblete; Fabrizio Pucci; Pranav Punuru; Anouka Saha; Kengo Sato; Ambuj Srivastava; Genki Terashi; Emilia Tugolukova; Jacob Verburgt; Qiqige Wuyun; Gül H. Zerze; Kaiming Zhang; Sicheng Zhang; Wei Zheng; Yuanzhe Zhou; Wah Chiu; David A. Case; Rhiju Das
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Structural Insights and Functional Dynamics of β-Lactoglobulin Fibrils
err2025-10-01
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PREAI
errSternke-Hoffmann, Rebecca; Rhyner, David; Terashi, Genki; Qureshi, Bilal Muhammad; Riek, Roland; Greenwald, Jason; Kihara, Daisuke; Lutz-Bueno, Viviane; Luo, Jinghui
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Distance-AF improves predicted protein structure models by AlphaFold2 with user-specified distance constraints
err2025-09-30
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errOAAI
errYuanyuan Zhang; Zicong Zhang; Yuki Kagaya; Genki Terashi; Bowen Zhao; Yi Xiong; Daisuke Kihara
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Structure Modeling Protocols for Protein Multimer and RNA in CASP16 With Enhanced MSAs, Model Ranking, and Deep Learning
err2025-08-01
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errOAAI
errYuki Kagaya; Tsukasa Nakamura; Jacob Verburgt; Anika Jain; Genki Terashi; Pranav Punuru; Emilia Tugolukova; Joon Hong Park; Anouka Saha; David Huang; Daisuke Kihara
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Effect of phosphorylation barcodes on arrestin binding to a chemokine receptor
errNATURE
IF48.5
err2025-05-21
err0
PREAI
errChen, Qiuyan; Schafer, Christopher T.; Mukherjee, Somnath; Wang, Kai; Gustavsson, Martin; Fuller, James R.; Tepper, Katelyn; Lamme, Thomas D.; Aydin, Yasmin; Agrawal, Parth; Terashi, Genki; Yao, Xin-Qiu; Kihara, Daisuke; Kossiakoff, Anthony A.; Handel, Tracy M.
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Integrative Protein Assembly With LZerD and Deep Learning in CAPRI 47-55
err2025-03-01
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PREAI
errChristoffer, Charles; Kagaya, Yuki; Verburgt, Jacob; Terashi, Genki; Shin, Woong-Hee; Jain, Anika; Sarkar, Daipayan; Aderinwale, Tunde; Subramaniya, Sai Raghavendra Maddhuri Venkata; Wang, Xiao; Zhang, Zicong; Zhang, Yuanyuan; Kihara, Daisuke
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Advancing structure modeling from cryo-EM maps with deep learning
err2025-02-07
err0
PREAI
errLi, Shu; Terashi, Genki; Zhang, Zicong; Kihara, Daisuke
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AI-based methods for biomolecular structure modeling for Cryo-EM
err2025-02-01
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PREAI
errFarheen, Farhanaz; Terashi, Genki; Zhu, Han; Kihara, Daisuke
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DiffModeler: large macromolecular structure modeling for cryo-EM maps using a diffusion model
err2024-10-21
err0
PREAI
errWang, Xiao; Zhu, Han; Terashi, Genki; Taluja, Manav; Kihara, Daisuke
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Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge
err2024-06-25
err1
errOAAI
errLawson, Catherine L.; Kryshtafovych, Andriy; Pintilie, Grigore D.; Burley, Stephen K.; Cerny, Jiri; Chen, Vincent B.; Emsley, Paul; Gobbi, Alberto; Joachimiak, Andrzej; Noreng, Sigrid; Prisant, Michael G.; Read, Randy J.; Richardson, Jane S.; Rohou, Alexis L.; Schneider, Bohdan; Sellers, Benjamin D.; Shao, Chenghua; Sourial, Elizabeth; Williams, Chris I.; Williams, Christopher J.; Yang, Ying; Abbaraju, Venkat; Afonine, Pavel V.; Baker, Matthew L.; Bond, Paul S.; Blundell, Tom L.; Burnley, Tom; Campbell, Arthur; Cao, Renzhi; Cheng, Jianlin; Chojnowski, Grzegorz; Cowtan, K. D.; DiMaio, Frank; Esmaeeli, Reza; Giri, Nabin; Grubmueller, Helmut; Hoh, Soon Wen; Hou, Jie; Hryc, Corey F.; Hunte, Carola; Igaev, Maxim; Joseph, Agnel P.; Kao, Wei-Chun; Kihara, Daisuke; Kumar, Dilip; Lang, Lijun; Lin, Sean; Subramaniya, Sai R. Maddhuri Venkata; Mittal, Sumit; Mondal, Arup; Moriarty, Nigel W.; Muenks, Andrew; Murshudov, Garib N.; Nicholls, Robert A.; Olek, Mateusz; Palmer, Colin M.; Perez, Alberto; Pohjolainen, Emmi; Pothula, Karunakar R.; Rowley, Christopher N.; Sarkar, Daipayan; Schaefer, Luisa U.; Schlicksup, Christopher J.; Schroeder, Gunnar F.; Shekhar, Mrinal; Si, Dong; Singharoy, Abhishek; Sobolev, Oleg V.; Terashi, Genki; Vaiana, Andrea C.; Vedithi, Sundeep C.; Verburgt, Jacob; Wang, Xiao; Warshamanage, Rangana; Winn, Martyn D.; Weyand, Simone; Yamashita, Keitaro; Zhao, Minglei; Schmid, Michael F.; Berman, Helen M.; Chiu, Wah
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DeepMainmast: integrated protocol of protein structure modeling for cryo-EM with deep learning and structure prediction
err2023-12-08
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PREAI
errTerashi, Genki; Wang, Xiao; Prasad, Devashish; Nakamura, Tsukasa; Kihara, Daisuke
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Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment
err2023-10-31
err33
errOAAI
errLensink, Marc F.; Brysbaert, Guillaume; Raouraoua, Nessim; Bates, Paul A.; Giulini, Marco; Honorato, Rodrigo V.; van Noort, Charlotte; Teixeira, Joao M. C.; Bonvin, Alexandre M. J. J.; Kong, Ren; Shi, Hang; Lu, Xufeng; Chang, Shan; Liu, Jian; Guo, Zhiye; Chen, Xiao; Morehead, Alex; Roy, Raj S.; Wu, Tianqi; Giri, Nabin; Quadir, Farhan; Chen, Chen; Cheng, Jianlin; Del Carpio, Carlos A.; Ichiishi, Eichiro; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Harmalkar, Ameya; Chu, Lee-Shin; Canner, Sam; Smanta, Rituparna; Gray, Jeffrey J.; Li, Hao; Lin, Peicong; He, Jiahua; Tao, Huanyu; Huang, Sheng-You; Roel-Touris, Jorge; Jimenez-Garcia, Brian; Christoffer, Charles W.; Jain, Anika J.; Kagaya, Yuki; Kannan, Harini; Nakamura, Tsukasa; Terashi, Genki; Verburgt, Jacob C.; Zhang, Yuanyuan; Zhang, Zicong; Fujuta, Hayato; Sekijima, Masakazu; Kihara, Daisuke; Khan, Omeir; Kotelnikov, Sergei; Ghani, Usman; Padhorny, Dzmitry; Beglov, Dmitri; Vajda, Sandor; Kozakov, Dima; Negi, Surendra S.; Ricciardelli, Tiziana; Barradas-Bautista, Didier; Cao, Zhen; Chawla, Mohit; Cavallo, Luigi; Oliva, Romina; Yin, Rui; Cheung, Melyssa; Guest, Johnathan D.; Lee, Jessica; Pierce, Brian G.; Shor, Ben; Cohen, Tomer; Halfon, Matan; Schneidman-Duhovny, Dina; Zhu, Shaowen; Yin, Rujie; Sun, Yuanfei; Shen, Yang; Maszota-Zieleniak, Martyna; Bojarski, Krzysztof K.; Lubecka, Emilia A.; Marcisz, Mateusz; Danielsson, Annemarie; Dziadek, Lukasz; Gaardlos, Margrethe; Gieldon, Artur; Liwo, Adam; Samsonov, Sergey A.; Slusarz, Rafal; Zieba, Karolina; Sieradzan, Adam K.; Czaplewski, Cezary; Kobayashi, Shinpei; Miyakawa, Yuta; Kiyota, Yasuomi; Takeda-Shitaka, Mayuko; Olechnovic, Kliment; Valancauskas, Lukas; Dapkunas, Justas; Venclovas, Ceslovas; Wallner, Bjorn; Yang, Lin; Hou, Chengyu; He, Xiaodong; Guo, Shuai; Jiang, Shenda; Ma, Xiaoliang; Duan, Rui; Qui, Liming; Xu, Xianjin; Zou, Xiaoqin; Velankar, Sameer; Wodak, Shoshana J.
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Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study
err2023-06-27
err7
errOAAI
errSchweke, Hugo; Xu, Qifang; Tauriello, Gerardo; Pantolini, Lorenzo; Schwede, Torsten; Cazals, Frederic; Lheritier, Alix; Fernandez-Recio, Juan; Rodriguez-Lumbreras, Luis Angel; Schueler-Furman, Ora; Varga, Julia. K. K.; Jimenez-Garcia, Brian; Reau, Manon F.; Bonvin, Alexandre M. J. J.; Savojardo, Castrense; Martelli, Pier-Luigi; Casadio, Rita; Tubiana, Jerome; Wolfson, Haim. J. J.; Oliva, Romina; Barradas-Bautista, Didier; Ricciardelli, Tiziana; Cavallo, Luigi; Venclovas, Ceslovas; Olechnovic, Kliment; Guerois, Raphael; Andreani, Jessica; Martin, Juliette; Wang, Xiao; Terashi, Genki; Sarkar, Daipayan; Christoffer, Charles; Aderinwale, Tunde; Verburgt, Jacob; Kihara, Daisuke; Marchand, Anthony; Correia, Bruno E.; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Dey, Sucharita; Dunbrack, Roland L.; Levy, Emmanuel D.; Wodak, Shoshana J.
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DAQ-Score Database: assessment of map-model compatibility for protein structure models from cryo-EM maps
err2023-05-09
err3
errOAAI
errNakamura, Tsukasa; Wang, Xiao; Terashi, Genki; Kihara, Daisuke
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Residue-wise local quality estimation for protein models from cryo-EM maps
err2022-08-11
err18
errOAAI
errTerashi, Genki; Wang, Xiao; Subramaniya, Sai Raghavendra Maddhuri Venkata; Tesmer, John J. G.; Kihara, Daisuke
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