arrow
Back
D

Daniele Raimondi

KU Leuven

21H-index
81Paper Count
1.9KCitation Count
Published Papers 27
Publication Date
JINet: easy and secure private data analysis for everyone
err2025-10-18
err0
errOAAI
errGiada Lalli; James Collier; Yves Moreau; Daniele Raimondi
errShare
errSave
Genomic prediction with kinship-based multiple kernel learning produces hypothesis on the underlying inheritance mechanisms of phenotypic traits
err2025-04-04
err0
errOAAI
errRaimondi, Daniele; Verplaetse, Nora; Passemiers, Antoine; Jans, Deborah Sarah; Cleynen, Isabelle; Moreau, Yves
errShare
errSave
The specification game: rethinking the evaluation of drug response prediction for precision oncology
err2025-03-14
err0
errOAAI
errCodice, Francesco; Pancotti, Corrado; Rollo, Cesare; Moreau, Yves; Fariselli, Piero; Raimondi, Daniele
errShare
errSave
Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A
err2025-03-01
err0
errOAAI
errJain, Shantanu; Trinidad, Marena; Nguyen, Thanh Binh; Jones, Kaiya; Neto, Santiago Diaz; Ge, Fang; Glagovsky, Ailin; Jones, Cameron; Moran, Giankaleb; Wang, Boqi; Rahimi, Kobra; Calici, Suemeyra Zeynep; Cedillo, Luis R.; Berardelli, Silvia; Ozden, Buse; Chen, Ken; Katsonis, Panagiotis; Williams, Amanda; Lichtarge, Olivier; Rana, Sadhna; Pradhan, Swatantra; Srinivasan, Rajgopal; Sajeed, Rakshanda; Joshi, Dinesh; Faraggi, Eshel; Jernigan, Robert; Kloczkowski, Andrzej; Xu, Jierui; Song, Zigang; Ozkan, Selen; Padilla, Natalia; de la Cruz, Xavier; Acuna-Hidalgo, Rocio; Grafmueller, Andrea; Barron, Laura T. Jimenez; Manfredi, Matteo; Savojardo, Castrense; Babbi, Giulia; Martelli, Pier Luigi; Casadio, Rita; Sun, Yuanfei; Zhu, Shaowen; Shen, Yang; Pucci, Fabrizio; Rooman, Marianne; Cia, Gabriel; Raimondi, Daniele; Hermans, Pauline; Kwee, Sofia; Chen, Ella; Astore, Courtney; Kamandula, Akash; Pejaver, Vikas; Ramola, Rashika; Velyunskiy, Michelle; Zeiberg, Daniel; Mishra, Reet; Sterling, Teague; Goldstein, Jennifer L.; Lugo-Martinez, Jose; Kazi, Sufyan; Li, Sindy; Long, Kinsey; Brenner, Steven E.; Bakolitsa, Constantina; Radivojac, Predrag; Suhr, Dean; Suhr, Teryn; Clark, Wyatt T.
errShare
errSave
Critical assessment of missense variant effect predictors on disease-relevant variant data
err2025-03-01
err1
errOAAI
errRastogi, Ruchir; Chung, Ryan; Li, Sindy; Li, Chang; Lee, Kyoungyeul; Woo, Junwoo; Kim, Dong-Wook; Keum, Changwon; Babbi, Giulia; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Chennen, Kirsley; Weber, Thomas; Poch, Olivier; Ancien, Francois; Cia, Gabriel; Pucci, Fabrizio; Raimondi, Daniele; Vranken, Wim; Rooman, Marianne; Marquet, Celine; Olenyi, Tobias; Rost, Burkhard; Andreoletti, Gaia; Kamandula, Akash; Peng, Yisu; Bakolitsa, Constantina; Mort, Matthew; Cooper, David N.; Bergquist, Timothy; Pejaver, Vikas; Liu, Xiaoming; Radivojac, Predrag; Brenner, Steven E.; Ioannidis, Nilah M.
errShare
errSave
A quantitative benchmark of neural network feature selection methods for detecting nonlinear signals
err2024-12-28
err1
errOAAI
errPassemiers, Antoine; Folco, Pietro; Raimondi, Daniele; Birolo, Giovanni; Moreau, Yves; Fariselli, Piero
errShare
errSave
A python library for the fast and scalable computation of biologically meaningful individual specific networks
err2024-08-06
err0
errOAAI
errLalli, Giada; Li, Zuqi; Melograna, Federico; Collier, James; Moreau, Yves; Raimondi, Daniele; Van Steen, Kristel
errShare
errSave
Data-driven probabilistic definition of the low energy conformational states of protein residues
err2024-07-09
err1
errOAAI
errGavalda-Garcia, Jose; Bickel, David; Roca-Martinez, Joel; Raimondi, Daniele; Orlando, Gabriele; Vranken, Wim
errShare
errSave
Biologically meaningful genome interpretation models to address data underdetermination for the leaf and seed ionome prediction in Arabidopsis thaliana
err2024-06-08
err1
errOAAI
errRaimondi, Daniele; Passemiers, Antoine; Verplaetse, Nora; Corso, Massimiliano; Ferrero-Serrano, Angel; Nazzicari, Nelson; Biscarini, Filippo; Fariselli, Piero; Moreau, Yves
errShare
errSave
Genome interpretation in a federated learning context allows the multi-center exome-based risk prediction of Crohn's disease patients
err2023-11-09
err3
errOAAI
errRaimondi, Daniele; Chizari, Haleh; Verplaetse, Nora; Loescher, Britt-Sabina; Franke, Andre; Moreau, Yves
errShare
errSave
Large sample size and nonlinear sparse models outline epistatic effects in inflammatory bowel disease
err2023-10-05
err4
errOAAI
errVerplaetse, Nora; Passemiers, Antoine; Arany, Adam; Moreau, Yves; Raimondi, Daniele
errShare
errSave
PyUUL provides an interface between biological structures and deep learning algorithms
err2022-02-18
err11
errOAAI
errOrlando, Gabriele; Raimondi, Daniele; Duran-Romana, Ramon; Moreau, Yves; Schymkowitz, Joost; Rousseau, Frederic
errShare
errSave
errShare
errSave
b2bTools: online predictions for protein biophysical features and their conservation
err2021-05-31
err8
errOAAI
errKagami, Luciano Porto; Orlando, Gabriele; Raimondi, Daniele; Ancien, Francois; Dixit, Bhawna; Gavalda-Garcia, Jose; Ramasamy, Pathmanaban; Roca-Martinez, Joel; Tzavella, Konstantina; Vranken, Wim
errShare
errSave
COVID-19 in people with multiple sclerosis: A global data sharing initiative
err2020-07-14
err54
errOAAI
errPeeters, Liesbet M.; Parciak, Tina; Walton, Clare; Geys, Lotte; Moreau, Yves; De Brouwer, Edward; Raimondi, Daniele; Pirmani, Ashkan; Kalincik, Tomas; Edan, Gilles; Simpson-Yap, Steve; De Raedt, Luc; Dauxais, Yann; Gautrais, Clement; Rodrigues, Paulo R.; McKenna, Landon; Lazovski, Nikola; Hillert, Jan; Forsberg, Lars; Spelman, Tim; McBurney, Robert; Schmidt, Hollie; Bergmann, Arnfin; Braune, Stefan; Stahmann, Alexander; Middleton, Rodden; Salter, Amber; Bebo, Bruce F.; Rojas, Juan, I; van der Walt, Anneke; Butzkueven, Helmut; van der Mei, Ingrid; Ivanov, Rumen; Hellwig, Kerstin; do Olival, Guilherme Sciascia; Cohen, Jeffrey A.; Van Hecke, Wim; Dobson, Ruth; Magyari, Melinda; Brum, Doralina Guimaraes; Alonso, Ricardo; Nicholas, Richard; Bauer, Johana; Chertcoff, Anibal; de Seze, Jerome; Louapre, Celine; Comi, Giancarlo; Rijke, Nick
errShare
errSave
ShiftCrypt: a web server to understand and biophysically align proteins through their NMR chemical shift values
err2020-05-27
err1
errOAAI
errOrlando, Gabriele; Raimondi, Daniele; Kagami, Luciano Porto; Vranken, Wim F.
errShare
errSave
An interpretable low-complexity machine learning framework for robust exome-based in-silico diagnosis of Crohn's disease patients
err2020-02-21
err17
errOAAI
errRaimondi, Daniele; Simm, Jaak; Arany, Adam; Fariselli, Piero; Cleynen, Isabelle; Moreau, Yves
errShare
errSave
errShare
errSave
Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins (vol 7, 8826, 2017)
err2019-08-15
err2
errOAAI
errRaimondi, Daniele; Orlando, Gabriele; Pancsa, Rita; Khan, Taushif; Vranken, Wim F.
errShare
errSave
errShare
errSave