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M

Milot Mirdita

seoul national university

29H-index
87Paper Count
2.1WCitation Count
Published Papers 24
Publication Date
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Expanding the scope of protein language modeling to protein-protein interactions with MSA Pairformer
errCell
IF42.5
err2026-07-21
err0
errOAAI
errYo Akiyama; Zhidian Zhang; Olivia Tang; Rachel Seongeun Kim; Milot Mirdita; Martin Steinegger; Sergey Ovchinnikov
errShare
errSave
Structural motif search across the protein universe with Folddisco
errNature Biotechnology
IF41.7
err2026-06-05
err0
PREAI
errHyunbin Kim; Rachel Seongeun Kim; Milot Mirdita; Jaewon Yoon; Martin Steinegger
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errSave
Multiple protein structure alignment at scale with FoldMason
errScience
IF45.8
err2026-01-29
err0
PREAI
errCameron L. M. Gilchrist; Milot Mirdita; Martin Steinegger
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errSave
Protein structure-informed bacteriophage genome annotation with Phold
errNucleic Acids Research
IF13.1
err2026-01-13
err7
PREAI
errBouras, George; Grigson, Susanna R.; Mirdita, Milot; Heinzinger, Michael; Papudeshi, Bhavya; Mallawaarachchi, Vijini; Green, Renee; Kim, Rachel Seongeun; Mihalia, Victor; Psaltis, Alkis James; Wormald, Peter-John; Vreugde, Sarah; Steinegger, Martin; Edwards, Robert A.
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errSave
AlphaFold Protein Structure Database 2025: a redesigned interface and updated structural coverage
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err2
PREAI
errBertoni, Damian; Tsenkov, Maxim; Magana, Paulyna; Nair, Sreenath; Pidruchna, Ivanna; Querino Lima Afonso, Marcelo; Midlik, Adam; Paramval, Urmila; Lawal, Dare; Tanweer, Ahsan; Last, Meera; Patel, Risha; Laydon, Agata; Lasecki, Dariusz; Dietrich, Nick; Tomlinson, Hamish; ZIDek, Augustin; Green, Tim; Kovalevskiy, Oleg; Lau, Andy; Kandathil, Shaun; Bordin, Nicola; Sillitoe, Ian; Mirdita, Milot; Jones, David; Orengo, Christine; Steinegger, Martin; Fleming, Jennifer R.; Velankar, Sameer
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errSave
Easy and interactive taxonomic profiling with Metabuli App
errBIOINFORMATICS
IF5.4
err2025-10-01
err0
errOAAI
errLee, Sunjae; Kim, Jaebeom; Mirdita, Milot; Gilchrist, Cameron L. M.; Steinegger, Martin
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errSave
GPU-accelerated homology search with MMseqs2
errNature Methods
IF32.1
err2025-09-18
err0
errOAAI
errFelix Kallenborn; Alejandro Chacon; Christian Hundt; Hassan Sirelkhatim; Kieran Didi; Sooyoung Cha; Christian Dallago; Milot Mirdita; Bertil Schmidt; Martin Steinegger
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errSave
De novo discovery of conserved gene clusters in microbial genomes with Spacedust
errNature Methods
IF32.1
err2025-09-15
err0
errOAAI
errRuoshi Zhang; Milot Mirdita; Johannes Söding
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errSave
BFVD-a large repository of predicted viral protein structures
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-22
err2
errOAAI
errKim, Rachel Seongeun; Karin, Eli Levy; Mirdita, Milot; Chikhi, Rayan; Steinegger, Martin
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errSave
Bilingual language model for protein sequence and structure
errgenomics proteomics bioinformatics
IF2.8
err2024-11-15
err12
errOAAI
errHeinzinger, Michael; Weissenow, Konstantin; Sanchez, Joaquin Gomez; Henkel, Adrian; Mirdita, Milot; Steinegger, Martin; Rost, Burkhard
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errSave
Easy and accurate protein structure prediction using ColabFold
errNATURE PROTOCOLS
IF16
err2024-10-14
err1
PREAI
errKim, Gyuri; Lee, Sewon; Karin, Eli Levy; Kim, Hyunbin; Moriwaki, Yoshitaka; Ovchinnikov, Sergey; Steinegger, Martin; Mirdita, Milot
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errSave
Cross-phyla protein annotation by structural prediction and alignment (vol 24, 113, 2023)
errGENOME BIOLOGY
IF9.4
err2024-02-19
err0
errOAAI
errRuperti, Fabian; Papadopoulos, Nikolaos; Musser, Jacob M.; Mirdita, Milot; Steinegger, Martin; Arendt, Detlev
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errSave
Petabase-Scale Homology Search for Structure Prediction
errcold spring harbor perspectives in medicine
IF8.4
err2024-02-05
err2
PREAI
errLee, Sewon; Kim, Gyuri; Karin, Eli Levy; Mirdita, Milot; Park, Sukhwan; Chikhi, Rayan; Babaian, Artem; Kryshtafovych, Andriy; Steinegger, Martin
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errSave
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-02
err193
errOAAI
errVaradi, Mihaly; Bertoni, Damian; Magana, Paulyna; Paramval, Urmila; Pidruchna, Ivanna; Radhakrishnan, Malarvizhi; Tsenkov, Maxim; Nair, Sreenath; Mirdita, Milot; Yeo, Jingi; Kovalevskiy, Oleg; Tunyasuvunakool, Kathryn; Laydon, Agata; Zidek, Augustin; Tomlinson, Hamish; Hariharan, Dhavanthi; Abrahamson, Josh; Green, Tim; Jumper, John; Birney, Ewan; Steinegger, Martin; Hassabis, Demis; Velankar, Sameer
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errSave
DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-02
err1
errOAAI
errBasu, Sushmita; Zhao, Bi; Biro, Balint; Faraggi, Eshel; Gsponer, Jorg; Hu, Gang; Kloczkowski, Andrzej; Malhis, Nawar; Mirdita, Milot; Soeding, Johannes; Steinegger, Martin; Wang, Duolin; Wang, Kui; Xu, Dong; Zhang, Jian; Kurgan, Lukasz
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errSave
Cross-phyla protein annotation by structural prediction and alignment
errGENOME BIOLOGY
IF9.4
err2023-05-12
err9
errOAAI
errRuperti, Fabian; Papadopoulos, Nikolaos; Musser, Jacob M.; Mirdita, Milot; Steinegger, Martin; Arendt, Detlev
errShare
errSave
Fast and accurate protein structure search with Foldseek
errNATURE BIOTECHNOLOGY
IF41.7
err2023-05-08
err438
errOAAI
errvan Kempen, Michel; Kim, Stephanie S.; Tumescheit, Charlotte; Mirdita, Milot; Lee, Jeongjae; Gilchrist, Cameron L. M.; Soeding, Johannes; Steinegger, Martin
errShare
errSave
ColabFold: making protein folding accessible to all
errNATURE METHODS
IF32.1
err2022-05-30
err2.1K
errOAAI
errMirdita, Milot; Schutze, Konstantin; Moriwaki, Yoshitaka; Heo, Lim; Ovchinnikov, Sergey; Steinegger, Martin
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errSave
PredictProtein - Predicting Protein Structure and Function for 29 Years
errNUCLEIC ACIDS RESEARCH
IF13.1
err2021-05-17
err160
errOAAI
errBernhofer, Michael; Dallago, Christian; Karl, Tim; Satagopam, Venkata; Heinzinger, Michael; Littmann, Maria; Olenyi, Tobias; Qiu, Jiajun; Schuetze, Konstantin; Yachdav, Guy; Ashkenazy, Haim; Ben-Tal, Nir; Bromberg, Yana; Goldberg, Tatyana; Kajan, Laszlo; O'Donoghue, Sean; Sander, Chris; Schafferhans, Andrea; Schlessinger, Avner; Vriend, Gerrit; Mirdita, Milot; Gawron, Piotr; Gu, Wei; Jarosz, Yohan; Trefois, Christophe; Steinegger, Martin; Schneider, Reinhard; Rost, Burkhard
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errSave
DescribePROT: database of amino acid-level protein structure and function predictions
errNUCLEIC ACIDS RESEARCH
IF13.1
err2020-10-29
err41
errOAAI
errZhao, Bi; Katuwawala, Akila; Oldfield, Christopher J.; Dunker, A. Keith; Faraggi, Eshel; Gsponer, Jorg; Kloczkowski, Andrzej; Malhis, Nawar; Mirdita, Milot; Obradovic, Zoran; Soding, Johannes; Steinegger, Martin; Zhou, Yaoqi; Kurgan, Lukasz
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
C
Chris Sander
H-index: 191 · Papers: 849
E
Ewan Birney
H-index: 142 · Papers: 500
H
Harold A. Scheraga
H-index: 126 · Papers: 1.4K
张扬 cover
张扬 (Yang Zhang)
H-index: 112 · Papers: 1.6K
B
Burkhard Rost
H-index: 101 · Papers: 705
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