A Mortazavi - Publications, H-index & Citations

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A Mortazavi

University of California

58H-index

1.3KPaper Count

6.3WCitation Count

Published Papers 77

Publication Date

Abi3S212F Alzheimer's disease variant alters plaque structure and disrupts microglia

alzheimer's & dementia

IF0

2026-05-06

OAAI

Claire A. Butler; Min Sung Gee; Katie O'Gara; Giedre Milinkeviciute; Celia Da Cunha; Shimako Kawauchi; Yueh-Hao Lu; Nellie Kwang; Kate I. Tsourmas; Christiana Prekopa; Zechuan Shi; Heidi Yahan Liang; Sherilyn D. Collins; Zachary A. Pashkutz; Jenna A. Sanchez; Kai-Xuan Shi; Amber D. Walker; Shuling Wang; Maigan L. A. Wong; Karina Genaro; Jonathan Neumann; Angela Gomez-Arboledas; Duc M. Duong; Nicholas T. Seyfried; Andrea J. Tenner; Frank M. LaFerla; Ali Mortazavi; Vivek Swarup; Grant R. MacGregor; Kim N. Green

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An expanded registry of candidate cis-regulatory elements

Nature

IF48.5

2026-01-07

OAAI

Jill E. Moore; Henry E. Pratt; Kaili Fan; Nishigandha Phalke; Jonathan Fisher; Shaimae I. Elhajjajy; Gregory Andrews; Mingshi Gao; Nicole Shedd; Yu Fu; Matthew C. Lacadie; Jair Meza; Mansi Khandpekar; Mohit Ganna; Eva Choudhury; Ross Swofford; Huong Phan; Christian C. Ramirez; Maxwell Campbell; Mary Likhite; Nina P. Farrell; Annika K. Weimer; Anusri Pampari; Vivekanandan Ramalingam; Fairlie Reese; Beatrice Borsari; Xuezhu Yu; Eve Wattenberg; Marina Ruiz-Romero; Milad Razavi-Mohseni; Jinrui Xu; Timur Galeev; Andres Colubri; Michael A. Beer; Roderic Guigó; Mark B. Gerstein; Jesse M. Engreitz; Mats Ljungman; Timothy E. Reddy; Michael P. Snyder; Charles B. Epstein; Elizabeth Gaskell; Bradley E. Bernstein; Diane E. Dickel; Axel Visel; Len A. Pennacchio; Ali Mortazavi; Anshul Kundaje; Zhiping Weng

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Adaptive response to electrical pulse stimulation is impaired in FSHD myotubes by DUX4 gene network activation

Scientific Reports

IF3.9

2025-12-17

OAAI

Xiangduo Kong; Ananya Rajagopal; Skylar Renee Foust; Jonovan Osorio; Ali Mortazavi; Anna Grosberg; Kyoko Yokomori

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Long-read sequencing transcriptome quantification with lr-kallisto

PLOS COMPUTATIONAL BIOLOGY

IF3.6

2025-12-01

PREAI

Loving, Rebekah K.; Sullivan, Delaney K.; Reese, Fairlie; Rebboah, Elisabeth; Sakr, Jasmine; Rezaie, Narges; Liang, Heidi Y.; Filimban, Ghassan; Kawauchi, Shimako; Booeshaghi, A. Sina; Melsted, Pall; Oakes, Conrad; Trout, Diane; Williams, Brian A.; MacGregor, Grant R.; Wold, Barbara J.; Mortazavi, Ali; Pachter, Lior

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Probing the roles of developmentally active neurons; in early-life adversity induced disruptions of adult behaviors

Frontiers in Neuroscience

IF3.2

2025-09-27

OAAI

Ryan Weber; Ali Mortazavi; Tallie Z. Baram; Amalia Floriou-Servou

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C5aR1 antagonism suppresses inflammatory glial responses and alters cellular signaling in an Alzheimer's disease mouse model

NATURE COMMUNICATIONS

IF15.7

2024-08-15

OAAI

Schartz, Nicole D.; Liang, Heidi Y.; Carvalho, Klebea; Chu, Shu-Hui; Mendoza-Arvilla, Adrian; Petrisko, Tiffany J.; Gomez-Arboledas, Angela; Mortazavi, Ali; Tenner, Andrea J.

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Individual longitudinal changes in DNA-methylome identify signatures of early-life adversity and correlate with later outcome

NEUROBIOLOGY OF STRESS

IF3.6

2024-07-01

OAAI

Short, Annabel K.; Weber, Ryan; Kamei, Noriko; Thai, Christina Wilcox; Arora, Hina; Mortazavi, Ali; Stern, Hal S.; Glynn, Laura; Baram, Tallie Z.

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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

NATURE METHODS

IF32.1

2024-06-07

OAAI

Pardo-Palacios, Francisco J.; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Silvia; Williams, Brian; Loveland, Jane E.; De Maria, Maite; Adams, Matthew S.; Balderrama-Gutierrez, Gabriela; Behera, Amit K.; Gonzalez Martinez, Jose M.; Hunt, Toby; Lagarde, Julien; Liang, Cindy E.; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A.; Prjibelski, Andrey D.; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M.; Celik, Muhammed Hasan; Chen, Ying; Du, Mei R. M.; Felton, Colette; Goeke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E.; Sim, Andre D.; Tang, Alison D.; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y.; Yang, Chen; Barnes, If; Berry, Andrew E.; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M.; Ferrandez-Peral, Luis; Garcia-Reyero, Natalia; Goetz, Stefan; Hernandez-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomas, Jorge; Mudge, Jonathan M.; Panayotova, Nedka G.; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A.; Carninci, Piero; Denslow, Nancy D.; Guigo, Roderic; Hunter, Margaret E.; Maehr, Rene; Shen, Yin; Tilgner, Hagen U.; Wold, Barbara J.; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M.; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N.

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Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy

GENOME RESEARCH

IF5.5

2024-05-22

OAAI

Chen, Lujia; Kong, Xiangduo; Johnston, Kevin G.; Mortazavi, Ali; Holmes, Todd C.; Tan, Zhiqun; Yokomori, Kyoko; Xu, Xiangmin

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The Abca7V1613M variant reduces Aβ generation, plaque load, and neuronal damage

ALZHEIMERS & DEMENTIA

IF11.1

2024-03-20

OAAI

Butler, Claire A.; Arvilla, Adrian Mendoza; Milinkeviciute, Giedre; Da Cunha, Celia; Kawauchi, Shimako; Rezaie, Narges; Liang, Heidi Y.; Javonillo, Dominic; Thach, Annie; Wang, Shuling; Collins, Sherilyn; Walker, Amber; Shi, Kai-Xuan; Neumann, Jonathan; Gomez-Arboledas, Angela; Henningfield, Caden M.; Hohsfield, Lindsay A.; Mapstone, Mark; Tenner, Andrea J.; LaFerla, Frank M.; Mortazavi, Ali; MacGregor, Grant R.; Green, Kim N.

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BIN1K358R suppresses glial response to plaques in mouse model of Alzheimer's disease

ALZHEIMERS & DEMENTIA

IF11.1

2024-03-09

OAAI

Garcia-Agudo, Laura Fernandez; Shi, Zechuan; Smith, Ian F.; Kramar, Eniko A.; Tran, Katelynn; Kawauchi, Shimako; Wang, Shuling; Collins, Sherilyn; Walker, Amber; Shi, Kai-Xuan; Neumann, Jonathan; Liang, Heidi Yahan; Da Cunha, Celia; Milinkeviciute, Giedre; Morabito, Samuel; Miyoshi, Emily; Rezaie, Narges; Gomez-Arboledas, Angela; Arvilla, Adrian Mendoza; Ghaemi, Daryan Iman; Tenner, Andrea J.; LaFerla, Frank M.; Wood, Marcelo A.; Mortazavi, Ali; Swarup, Vivek; MacGregor, Grant R.; Green, Kim N.

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Genetic diversity promotes resilience in a mouse model of Alzheimer's disease

ALZHEIMERS & DEMENTIA

IF11.1

2024-03-01

OAAI

Soni, Neelakshi; Hohsfield, Lindsay A.; Tran, Kristine M.; Kawauchi, Shimako; Walker, Amber; Javonillo, Dominic; Phan, Jimmy; Matheos, Dina; Da Cunha, Celia; Uyar, Asli; Milinkeviciute, Giedre; Gomez-Arboledas, Angela; Tran, Katelynn; Kaczorowski, Catherine C.; Wood, Marcelo A.; Tenner, Andrea J.; LaFerla, Frank M.; Carter, Gregory .; Mortazavi, Ali; Swarup, Vivek; MacGregor, Grant R.; Green, Kim N.

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L-GIREMI uncovers RNA editing sites in long-read RNA-seq

GENOME BIOLOGY

IF9.4

2023-07-20

OAAI

Liu, Zhiheng; Quinones-Valdez, Giovanni; Fu, Ting; Huang, Elaine; Choudhury, Mudra; Reese, Fairlie; Mortazavi, Ali; Xiao, Xinshu

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A Trem2R47H mouse model without cryptic splicing drives age- and disease-dependent tissue damage and synaptic loss in response to plaques

MOLECULAR NEURODEGENERATION

IF17.5

2023-02-17

OAAI

Tran, Kristine M. M.; Kawauchi, Shimako; Kramar, Eniko A.; Rezaie, Narges; Liang, Heidi Yahan; Sakr, Jasmine S. S.; Gomez-Arboledas, Angela; Arreola, Miguel A. A.; da Cunha, Celia; Phan, Jimmy; Wang, Shuling; Collins, Sherilyn; Walker, Amber; Shi, Kai-Xuan; Neumann, Jonathan; Filimban, Ghassan; Shi, Zechuan; Milinkeviciute, Giedre; Javonillo, Dominic I. I.; Tran, Katelynn; Gantuz, Magdalena; Forner, Stefania; Swarup, Vivek; Tenner, Andrea J. J.; LaFerla, Frank M. M.; Wood, Marcelo A. A.; Mortazavi, Ali; MacGregor, Grant R. R.; Green, Kim N. N.

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Single-Cell Transcriptional Changes in Hypothalamic Corticotropin-Releasing Factor-Expressing Neurons After Early-Life Adversity Inform Enduring Alterations in Vulnerabilities to Stress

BIOLOGICAL PSYCHIATRY: GLOBAL OPEN SCIENCE

IF3.7

2023-01-01

OAAI

Short, Annabel K.; Thai, Christina W.; Chen, Yuncai; Kamei, Noriko; Pham, Aidan L.; Birnie, Matthew T.; Bolton, Jessica L.; Mortazavi, Ali; Baram, Tallie Z.

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C5aR1 antagonism alters microglial polarization and mitigates disease progression in a mouse model of Alzheimer's disease

ACTA NEUROPATHOLOGICA COMMUNICATIONS

IF5.7

2022-08-17

OAAI

Gomez-Arboledas, Angela; Carvalho, Klebea; Balderrama-Gutierrez, Gabriela; Chu, Shu-Hui; Liang, Heidi Yahan; Schartz, Nicole D.; Selvan, Purnika; Petrisko, Tiffany J.; Pan, Miranda A.; Mortazavi, Ali; Tenner, Andrea J.

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Modulation of C5a-C5aR1 signaling alters the dynamics of AD progression

JOURNAL OF NEUROINFLAMMATION

IF10.1

2022-07-11

OAAI

Carvalho, Klebea; Schartz, Nicole D.; Balderrama-Gutierrez, Gabriela; Liang, Heidi Y.; Chu, Shu-Hui; Selvan, Purnika; Gomez-Arboledas, Angela; Petrisko, Tiffany J.; Fonseca, Maria, I; Mortazavi, Ali; Tenner, Andrea J.

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Enhancement of alkaline protease production of Bacillus strains isolated from dairy sludge under cold, salt and ultrasound stress

INTERNATIONAL DAIRY JOURNAL

IF3.4

2022-06-01

PREAI

Sedaghat, Sepideh; Yazdi, Farideh Tabatabai; Mortazavi, Ali; Shahidi, Fakhri

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Multiple Mechanisms of Photoreceptor Spectral Tuning in Heliconius Butterflies

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2022-03-28

OAAI

McCulloch, Kyle J.; Macias-Munoz, Aide; Mortazavi, Ali; Briscoe, Adriana D.

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Disruption of β-Catenin-Dependent Wnt Signaling in Colon Cancer Cells Remodels the Microenvironment to Promote Tumor Invasion

MOLECULAR CANCER RESEARCH

IF4.7

2022-03-03

OAAI

Chen, George T.; Tifrea, Delia F.; Murad, Rabi; Habowski, Amber N.; Lyou, Yung; Duong, Madeleine R.; Hosohama, Linzi; Mortazavi, Ali; Edwards, Robert A.; Waterman, Marian L.

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Research Directions