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Daniel Blankenberg

cleveland clinic

34H-index
151Paper Count
1.9WCitation Count
Published Papers 36
Publication Date
A novel Vector-Symbolic Architecture for graph encoding and its application to viral pangenome-based species classification
err2026-05-17
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errOAAI
errFabio Cumbo; Kabir Dhillon; Jayadev Joshi; Davide Chicco; Sercan Aygun; Daniel Blankenberg
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DICED (Database of Identified Cleavage Sites Endemic to Diseases States): A Searchable Web Interface for Terminomics/Degradomics
err2025-05-12
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errJayadev Joshi; Sumit Bhutada; Daniel R. Martin; Joyce Guzowski; Daniel Blankenberg; Suneel S. Apte
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How can quantum computing be applied in clinical trial design and optimization?
err2024-10-01
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errDoga, Hakan; Bose, Aritra; Sahin, M. Emre; Bettencourt-Silva, Joao; Pham, Anh; Kim, Eunyoung; Andress, Alan; Saxena, Sudhir; Parida, Laxmi; Robertus, Jan Lukas; Kawaguchi, Hideaki; Soliman, Radwa; Blankenberg, Daniel
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Homozygous EPRS1 missense variant causing hypomyelinating leukodystrophy-15 alters variant-distal mRNA m6A site accessibility
err2024-05-20
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errKhan, Debjit; Ramachandiran, Iyappan; Vasu, Kommireddy; China, Arnab; Khan, Krishnendu; Cumbo, Fabio; Halawani, Dalia; Terenzi, Fulvia; Zin, Isaac; Long, Briana; Costain, Gregory; Blaser, Susan; Carnevale, Amanda; Gogonea, Valentin; Dutta, Ranjan; Blankenberg, Daniel; Yoon, Grace; Fox, Paul L.
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A Perspective on Protein Structure Prediction Using Quantum Computers
err2024-05-04
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errDoga, Hakan; Raubenolt, Bryan; Cumbo, Fabio; Joshi, Jayadev; Difilippo, Frank P.; Qin, Jun; Blankenberg, Daniel; Shehab, Omar
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Sphingolipid biosynthesis is essential for metabolic rewiring during TH17 cell differentiation
err2024-04-26
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errAbimannan, Thiruvaimozhi; Parthibane, Velayoudame; Le, Si-Hung; Vijaykrishna, Nagampalli; Fox, Stephen D.; Karim, Baktiar; Kunduri, Govind; Blankenberg, Daniel; Andresson, Thorkell; Bamba, Takeshi; Acharya, Usha; Acharya, Jairaj K.
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Design and Synthesis of Thiazole Scaffold-Based Small Molecules as Anticancer Agents Targeting the Human Lactate Dehydrogenase A Enzyme
err2023-05-10
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errOAAI
errSharma, Dolly; Singh, Mamta; Joshi, Jayadev; Garg, Manoj; Chaudhary, Vidhi; Blankenberg, Daniel; Chandna, Sudhir; Kumar, Vinit; Rani, Reshma
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Genomics to Notebook (g2nb): Extending the electronic notebook to address the needs of cancer bioinformatics
err2023-04-04
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PREAI
errReich, Michael M.; Tabor, Thorin; Liefeld, John; Joshi, Jayadev; Kim, Forrest; Thorvaldsdottir, Helga; Blankenberg, Daniel; Mesirov, Jill P.
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Analysis of nested alternate open reading frames and their encoded proteins
err2022-10-19
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errVasu, Kommireddy; Khan, Debjit; Ramachandiran, Iyappan; Blankenberg, Daniel; Fox, Paul L.
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GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases
err2022-06-27
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errOh, Sehyun; Geistlinger, Ludwig; Ramos, Marcel; Blankenberg, Daniel; van den Beek, Marius; Taroni, Jaclyn N.; Carey, Vincent J.; Greene, Casey S.; Waldron, Levi; Davis, Sean
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
err2022-04-21
err532
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errOstrovsky, Alexander E.; Mahmoud, Alexandru; Lonie, Andrew J.; Syme, Anna; Fouilloux, Anne; Bretaudeau, Anthony; Nekrutenko, Anton; Kumar, Anup; Eschenlauer, Arthur C.; DeSanto, Assunta D.; Guerler, Aysam; Serrano-Solano, Beatriz; Batut, Berenice; Gruening, Bjoern A.; Langhorst, Bradley W.; Carr, Bridget; Raubenolt, Bryan A.; Hyde, Cameron J.; Bromhead, Catherine J.; Barnett, Christopher B.; Royaux, Coline; Gallardo, Cristobal; Blankenberg, Daniel; Fornika, Daniel J.; Baker, Dannon; Bouvier, Dave; Clements, Dave; Morais, David A. de Lima; Tabernero, David Lopez; Lariviere, Delphine; Nasr, Engy; Afgan, Enis; Zambelli, Federico; Heyl, Florian; Psomopoulos, Fotis; Coppens, Frederik; Price, Gareth R.; Cuccuru, Gianmauro; Le Corguille, Gildas; Von Kuster, Greg; Akbulut, Gulsum Gudukbay; Rasche, Helena; Hans-Rudolf, Hotz; Eguinoa, Ignacio; Makunin, Igor; Ranawaka, Isuru J.; Taylor, James P.; Joshi, Jayadev; Hillman-Jackson, Jennifer; Goecks, Jeremy; Chilton, John M.; Kamali, Kaivan; Suderman, Keith; Poterlowicz, Krzysztof; Yvan, Le Bras; Lopez-Delisle, Lucille; Sargent, Luke; Bassetti, Madeline E.; Tangaro, Marco Antonio; van den Beek, Marius; Cech, Martin; Bernt, Matthias; Fahrner, Matthias; Tekman, Mehmet; Foell, Melanie C.; Schatz, Michael C.; Crusoe, Michael R.; Roncoroni, Miguel; Kucher, Natalie; Coraor, Nate; Stoler, Nicholas; Rhodes, Nick; Soranzo, Nicola; Pinter, Niko; Goonasekera, Nuwan A.; Moreno, Pablo A.; Videm, Pavankumar; Melanie, Petera; Mandreoli, Pietro; Jagtap, Pratik D.; Gu, Qiang; Weber, Ralf J. M.; Lazarus, Ross; Vorderman, Ruben H. P.; Hiltemann, Saskia; Golitsynskiy, Sergey; Garg, Shilpa; Bray, Simon A.; Gladman, Simon L.; Leo, Simone; Mehta, Subina P.; Griffin, Timothy J.; Jalili, Vahid; Yves, Vandenbrouck; Wen, Victor; Nagampalli, Vijay K.; Bacon, Wendi A.; de Koning, Willem; Maier, Wolfgang; Briggs, Peter J.
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Re-Expression of ERα and AR in Receptor Negative Endocrine Cancers via GSK3 Inhibition
err2022-03-24
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errSharma, Vikas; Joshi, Jayadev; Yeh, I-Ju; Doughman, YongQiu; Blankenberg, Daniel; Wald, David; Montano, Monica M.
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Evaluation of low-cost particulate matter sensors OPC N2 and PM Nova for aerosol monitoring
err2022-03-01
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PREAI
errDubey, Ravish; Patra, Aditya Kumar; Joshi, Jayadev; Blankenberg, Daniel; Kolluru, Soma Sekhara Rao; Madhu, Badri; Raval, Simit
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A single-cell RNA-sequencing training and analysis suite using the Galaxy framework
err2020-10-20
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errTekman, Mehmet; Batut, Berenice; Ostrovsky, Alexander; Antoniewski, Christophe; Clements, Dave; Ramirez, Fidel; Etherington, Graham J.; Hotz, Hans-Rudolf; Scholtalbers, Jelle; Manning, Jonathan R.; Bellenger, Lea; Doyle, Maria A.; Heydarian, Mohammad; Huang, Ni; Soranzo, Nicola; Moreno, Pablo; Mautner, Stefan; Papatheodorou, Irene; Nekrutenko, Anton; Taylor, James; Blankenberg, Daniel; Backofen, Rolf; Gruening, Bjoern
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update (vol 48, pg W395, 2020)
err2020-06-25
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errJalili, Vahid; Afgan, Enis; Gu, Qiang; Clements, Dave; Blankenberg, Daniel; Goecks, Jeremy; Taylor, James; Nekrutenko, Anton
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
err2020-06-01
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errJalili, Vahid; Afgan, Enis; Gu, Qiang; Clements, Dave; Blankenberg, Daniel; Goecks, Jeremy; Taylor, James; Nekrutenko, Anton
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Galaxy External Display Applications: closing a dataflow interoperability loop
err2020-01-20
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errBlankenberg, Daniel; Chilton, John; Coraor, Nate
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