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Brian Long

Allen Institute for Brain Science

37H-index
108Paper Count
8.5KCitation Count
Published Papers 25
Publication Date
Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering
err2026-08-24
err0
errOAAI
errJieran Sun; Kirti Biharie; Peiying Cai; Niklas Müller-Bötticher; Paul Kiessling; Meghan A. Turner; Søren Helweg Dam; Florian Heyl; Sarusan Kathirchelvan; Martin Emons; Samuel Gunz; Sven Twardziok; Amin El-Heliebi; Martin Zacharias; Roland Eils; Marcel Reinders; Raphael Gottardo; Christoph Kuppe; Brian Long; Ahmed Mahfouz; Mark D. Robinson; Naveed Ishaque
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Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy
err2026-02-10
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PREAI
errSebastian Tiesmeyer; Niklas Müller-Bötticher; Alexander Malt; Leyao Ma; Sergio Marco-Salas; Paul Kiessling; Paul Horn; Adrien Guillot; Louis B. Kuemmerle; Frank Tacke; Fabian J. Theis; Christoph Kuppe; Mats Nilsson; Roland Eils; Brian Long; Naveed Ishaque
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SEA-AD is a multimodal cellular atlas and resource for Alzheimer's disease
err2024-10-14
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PREAI
errHawrylycz, Michael; Kaplan, Eitan S.; Travaglini, Kyle J.; Gabitto, Mariano I.; Miller, Jeremy A.; Ng, Lydia; Close, Jennie L.; Hodge, Rebecca D.; Long, Brian; Mollenkopf, Tyler; Mufti, Shoaib; Gatto, Nicole M.; Larson, Eric B.; Crane, Paul K.; Grabowski, Thomas J.; Keene, C. Dirk; Lein, Ed S.
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Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain
err2023-06-13
err5
errOAAI
errZhang, Yun; Miller, Jeremy A.; Park, Jeongbin; Lelieveldt, Boudewijn P.; Long, Brian; Abdelaal, Tamim; Aevermann, Brian D.; Biancalani, Tommaso; Comiter, Charles; Dzyubachyk, Oleh; Eggermont, Jeroen; Langseth, Christoffer Mattsson; Petukhov, Viktor; Scalia, Gabriele; Vaishnav, Eeshit Dhaval; Zhao, Yilin; Lein, Ed S.; Scheuermann, Richard H.
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Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex
err2023-05-30
err13
errOAAI
errKim, Mean-Hwan; Radaelli, Cristina; Thomsen, Elliot R.; Monet, Deja; Chartrand, Thomas; Jorstad, Nikolas L.; Mahoney, Joseph T.; Taormina, Michael J.; Long, Brian; Baker, Katherine; Bakken, Trygve E.; Campagnola, Luke; Casper, Tamara; Clark, Michael; Dee, Nick; D'Orazi, Florence; Gamlin, Clare; Kalmbach, Brian E.; Kebede, Sara; Lee, Brian R.; Ng, Lindsay; Trinh, Jessica; Cobbs, Charles; Gwinn, Ryder P.; Keene, C. Dirk; Ko, Andrew L.; Ojemann, Jeffrey G.; Silbergeld, Daniel L.; Sorensen, Staci A.; Berg, Jim; Smith, Kimberly A.; Nicovich, Philip R.; Jarsky, Tim; Zeng, Hongkui; Ting, Jonathan T.; Levi, Boaz P.; Lein, Ed
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Comprehensive in situ mapping of human cortical transcriptomic cell types
err2021-08-24
err19
errOAAI
errLangseth, Christoffer Mattsson; Gyllborg, Daniel; Miller, Jeremy A.; Close, Jennie L.; Long, Brian; Lein, Ed S.; Hilscher, Markus M.; Nilsson, Mats
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Cell segmentation-free inference of cell types from in situ transcriptomics data (vol 12, 3545, 2021)
err2021-06-28
err0
errOAAI
errPark, Jeongbin; Choi, Wonyl; Tiesmeyer, Sebastian; Long, Brian; Borm, Lars E.; Garren, Emma; Nguyen, Thuc Nghi; Tasic, Bosiljka; Codeluppi, Simone; Graf, Tobias; Schlesner, Matthias; Stegle, Oliver; Eils, Roland; Ishaque, Naveed
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Cell segmentation-free inference of cell types from in situ transcriptomics data
err2021-06-10
err60
errOAAI
errPark, Jeongbin; Choi, Wonyl; Tiesmeyer, Sebastian; Long, Brian; Borm, Lars E.; Garren, Emma; Thuc Nghi Nguyen; Tasic, Bosiljka; Codeluppi, Simone; Graf, Tobias; Schlesner, Matthias; Stegle, Oliver; Eils, Roland; Ishaque, Naveed
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Spatially resolved transcriptomics in neuroscience
err2021-01-06
err57
PREAI
errClose, Jennie L.; Long, Brian R.; Zeng, Hongkui
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h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex
errNEURON
IF15
err2018-12-01
err105
errOAAI
errKalmbach, Brian E.; Buchin, Anatoly; Long, Brian; Close, Jennie; Nandi, Anirban; Miller, Jeremy A.; Bakken, Trygve E.; Hodge, Rebecca D.; Chong, Peter; de Frates, Rebecca; Dai, Kael; Maltzer, Zoe; Nicovich, Philip R.; Keene, C. Dirk; Silbergeld, Daniel L.; Gwinn, Ryder P.; Cobbs, Charles; Ko, Andrew L.; Ojemann, Jeffrey G.; Koch, Christof; Anastassiou, Costas A.; Lein, Ed S.; Ting, Jonathan T.
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SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology
err2017-08-24
err5
errOAAI
errLong, Brian; Zhou, Zhi; Cetin, Ali; Ting, Jonathan; Gwinn, Ryder; Tasic, Bosiljka; Daigle, Tanya; Lein, Ed; Zeng, Hongkui; Saggau, Peter; Hawrylycz, Michael; Peng, Hanchuan
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Fetal Hematopoietic Stem Cell Transplantation Fails to Fully Regenerate the B-Lymphocyte Compartment
err2016-01-01
err62
errOAAI
errGhosn, Eliver Eid Bou; Waters, Jeffrey; Phillips, Megan; Yamamoto, Ryo; Long, Brian R.; Yang, Yang; Gerstein, Rachel; Stoddart, Cheryl A.; Nakauchi, Hiromitsu; Herzenberg, Leonore A.
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3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo
err2015-12-22
err29
errOAAI
errLong, Brian; Li, Lu; Knoblich, Ulf; Zeng, Hongkui; Peng, Hanchuan
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Endothelial cell high-enrichment from endovascular biopsy sample by laser capture microdissection and fluorescence activated cell sorting
err2014-12-01
err14
errOAAI
errSun, Zhengda; Su, Hua; Long, Brian; Sinclair, Elizabeth; Hetts, Steven W.; Higashida, Randall T.; Dowd, Christopher F.; Halbach, Van V.; Cooke, Daniel L.
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NK Cells and CD1d-restricted NKT Cells Respond in Different Ways with Divergent Kinetics to IL-2 Treatment in Primary HIV-1 Infection
err2011-01-04
err14
errOAAI
errKuylenstierna, C.; Snyder-Cappione, J. E.; Loo, C. P.; Long, B. R.; Gonzalez, V. D.; Michaelsson, J.; Moll, M.; Spotts, G.; Hecht, F. M.; Nixon, D. F.; Sandberg, J. K.
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Single Particle Quantum Dot Imaging Achieves Ultrasensitive Detection Capabilities for Western Immunoblot Analysis
err2009-05-19
err29
PREAI
errScholl, Benjamin; Liu, Hong Yan; Long, Brian R.; McCarty, Owen J. T.; O'Hare, Thomas; Druker, Brian J.; Vu, Tania Q.
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