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J

Joseph A. Piccirilli

university of chicago

52H-index
254Paper Count
9.5KCitation Count
Published Papers 113
Publication Date
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A universal Fab targeting a conserved U1A–RNA epitope for RNA structure determination by cryo-EM
errNucleic Acids Research
IF13.1
err2026-05-20
err0
errOAAI
errEkaterina V Filippova; Daniel Krochmal; Somnath Mukherjee; Joseph A Piccirilli; Anthony A Kossiakoff; null
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Functional Relevance of CASP16 Nucleic Acid Predictions as Evaluated by Structure Providers
errProteins: Structure, Function, and Bioinformatics
IF0
err2025-09-04
err0
errOAAI
errRachael C. Kretsch; Reinhard Albrecht; Ebbe S. Andersen; Hsuan-Ai Chen; Wah Chiu; Rhiju Das; Jeanine G. Gezelle; Marcus D. Hartmann; Claudia Höbartner; Yimin Hu; Shekhar Jadhav; Philip E. Johnson; Christopher P. Jones; Deepak Koirala; Emil L. Kristoffersen; Eric Largy; Anna Lewicka; Cameron D. Mackereth; Marco Marcia; Michela Nigro; Manju Ojha; Joseph A. Piccirilli; Phoebe A. Rice; Heewhan Shin; Anna-Lena Steckelberg; Zhaoming Su; Yoshita Srivastava; Liu Wang; Yuan Wu; Jiahao Xie; Nikolaj H. Zwergius; John Moult; Andriy Kryshtafovych
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errSave
RNA-Puzzles Round V: blind predictions of 23 RNA structures
errNATURE METHODS
IF32.1
err2024-12-02
err0
errOAAI
errBu, Fan; Adam, Yagoub; Adamiak, Ryszard W.; Antczak, Maciej; de Aquino, Belisa Rebeca H.; Badepally, Nagendar Goud; Batey, Robert T.; Baulin, Eugene F.; Boinski, Pawel; Boniecki, Michal J.; Bujnicki, Janusz M.; Carpenter, Kristy A.; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K.; Dimaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V.; Dror, Ron O.; Dunin-Horkawicz, Stanislaw; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferre-D'Amare, Adrian R.; Geniesse, Caleb; Ghanim, George E.; Guzman, Horacio V.; Hood, Iris V.; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S.; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C.; Kurcinski, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, Benoit; Moafinejad, S. Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P. N.; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A.; Pilla, Smita Priyadarshini; Pluta, Radoslaw; Poblete, Simon; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C.; Szachniuk, Marta; Townshend, Raphael; Trachman III, Robert J.; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K.; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Zyla, Adriana; Westhof, Eric; Miao, Zhichao
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Post-transcriptional methylation of mitochondrial-tRNA differentially contributes to mitochondrial pathology
errNATURE COMMUNICATIONS
IF15.7
err2024-10-18
err0
errOAAI
errMaharjan, Sunita; Gamper, Howard; Yamaki, Yuka; Christian, Thomas; Henley, Robert Y.; Li, Nan-Sheng; Suzuki, Takeo; Suzuki, Tsutomu; Piccirilli, Joseph A.; Wanunu, Meni; Seifert, Erin; Wallace, Douglas C.; Hou, Ya-Ming
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The Role of General Acid Catalysis in the Mechanism of an Alkyl Transferase Ribozyme
errACS CATALYSIS
IF13.1
err2024-10-02
err0
errOAAI
errWilson, Timothy J.; McCarthy, Erika; Ekesan, Solen; Giese, Timothy J.; Li, Nan-Sheng; Huang, Lin; Piccirilli, Joseph A.; York, Darrin M.; Lilley, David M. J.
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errSave
A potential role for RNA aminoacylation prior to its role in peptide synthesis
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-08-23
err0
errOAAI
errRadakovic, Aleksandar; Lewicka, Anna; Todisco, Marco; Aitken, Harry R. M.; Weiss, Zoe; Kim, Shannon; Bannan, Abdullah; Piccirilli, Joseph A.; Szostak, Jack W.
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errSave
Unraveling RNA Conformation Dynamics in Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episode Syndrome with Solid-State Nanopores
errACS NANO
IF16
err2024-06-21
err2
PREAI
errNamani, Srilahari; Kavetsky, Kyril; Lin, Chih-Yuan; Maharjan, Sunita; Gamper, Howard B.; Li, Nan-Sheng; Piccirilli, Joseph A.; Hou, Ya-Ming; Drndic, Marija
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errSave
Structural basis for promiscuity in ligand recognition by yjdF riboswitch
errCELL DISCOVERY
IF12.5
err2024-04-02
err1
errOAAI
errKrochmal, Daniel; Roman, Christina; Lewicka, Anna; Shao, Yaming; Piccirilli, Joseph A.
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errSave
Reinvestigating the Synthesis and Characterization of Ethyl 3-[5-(2-Ethoxycarbonyl-1-methylvinyloxy)-1-methyl-1H-indol-3-yl]-but-2-enoate
errACS OMEGA
IF4.3
err2023-08-24
err0
errOAAI
errLi, Nan-Sheng; Piccirilli, Joseph A.; Greene, Geoffrey L.
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errSave
Crystal structure of a cap-independent translation enhancer RNA
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-08-07
err3
errOAAI
errLewicka, Anna; Roman, Christina; Jones, Stacey; Disare, Michael; Rice, Phoebe A.; Piccirilli, Joseph A.
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errSave
Dissociative Transition State in Hepatitis Delta Virus Ribozyme Catalysis
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2023-01-27
err4
PREAI
errWeissman, Benjamin; Ekesan, Solen; Lin, Hsuan-Chun; Gardezi, Shahbaz; Li, Nan-Sheng; Giese, Timothy J.; McCarthy, Erika; Harris, Michael E.; York, Darrin M.; Piccirilli, Joseph A.
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errSave
Structural Basis for Fluorescence Activation by Pepper RNA
errACS CHEMICAL BIOLOGY
IF3.8
err2022-06-27
err10
errOAAI
errRees, Huw C.; Gogacz, Wojciech; Li, Nan-Sheng; Koirala, Deepak; Piccirilli, Joseph A.
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errSave
Sub-3-Å cryo-EM structure of RNA enabled by engineered homomeric self-assembly
errNATURE METHODS
IF32.1
err2022-05-02
err33
errOAAI
errLiu, Di; Thelot, Francois A.; Piccirilli, Joseph A.; Liao, Maofu; Yin, Peng
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errSave
Structural basis for substrate binding and catalysis by a self-alkylating ribozyme
errNATURE CHEMICAL BIOLOGY
IF13.7
err2022-01-20
err17
PREAI
errKrochmal, Daniel; Shao, Yaming; Li, Nan-Sheng; DasGupta, Saurja; Shelke, Sandip A.; Koirala, Deepak; Piccirilli, Joseph A.
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errSave
Structures of artificially designed discrete RNA nanoarchitectures at near-atomic resolution
errSCIENCE ADVANCES
IF12.5
err2021-09-24
err4
errOAAI
errLiu, Di; Shao, Yaming; Piccirilli, Joseph A.; Weizmann, Yossi
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errSave
Synthesis of Oligoribonucleotides Containing a 2′-Amino-5′-S-phosphorothiolate Linkage
errJOURNAL OF ORGANIC CHEMISTRY
IF3.6
err2021-09-17
err1
errOAAI
errLi, Nan-Sheng; Koo, Selene C.; Piccirilli, Joseph A.
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errSave
The SARS-CoV-2 Programmed-1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 Å Using Chaperone-Assisted RNA Crystallography
errACS CHEMICAL BIOLOGY
IF3.8
err2021-07-30
err69
errOAAI
errRoman, Christina; Lewicka, Anna; Koirala, Deepak; Li, Nan-Sheng; Piccirilli, Joseph A.
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errSave
The hammerhead self-cleaving motif as a precursor to complex endonucleolytic ribozymes
errRNA
IF5
err2021-06-15
err6
errOAAI
errDasGupta, Saurja; Nykiel, Kamila; Piccirilli, Joseph A.
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errSave
The Varkud Satellite Ribozyme: A Thirty-Year Journey through Biochemistry, Crystallography, and Computation
errACCOUNTS OF CHEMICAL RESEARCH
IF17.7
err2021-05-11
err9
PREAI
errDasGupta, Saurja; Piccirilli, Joseph A.
errShare
errSave
Crystalizing Structured RNAs Using a Surface-Entropy-Reduced Fab as a Crystallization Chaperone
errFASEB JOURNAL
IF4.2
err2020-04-19
err0
PREAI
errRoman, Christina; Koirala, Deepak; Piccirilli, Joseph
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
D
Dinshaw J. Patel
H-index: 135 · Papers: 837
D
Douglas C. Wallace
H-index: 134 · Papers: 605
D
David P. Bartel
H-index: 121 · Papers: 314
R
Russ B. Altman
H-index: 114 · Papers: 955
J
Jack W. Szostak
H-index: 112 · Papers: 573
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