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J

Janusz M. Bujnicki

International Institute of Molecular and Cell Biology in Warsaw

72H-index
533Paper Count
2.2WCitation Count
Published Papers 203
Publication Date
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ARTEM server: an online tool for nucleic acid 3D motif searches, 3D structure superposition and structure-based alignment
errNucleic Acids Research
IF13.1
err2026-05-05
err0
errOAAI
errDominik Sordyl; Jan Cielesz; Davyd R Bohdan; Eugene F Baulin; Janusz M Bujnicki
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Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16
errProteins: Structure, Function, and Bioinformatics
IF0
err2025-11-08
err0
PREAI
errRachael C. Kretsch; Elisa Posani; Eugene F. Baulin; Janusz M. Bujnicki; Giovanni Bussi; Thomas E. Cheatham III; Shi-Jie Chen; Arne Elofsson; Masoud Amiri Farsani; Olivia N. Fisher; M. Michael Gromiha; Ayush Gupta; Michiaki Hamada; K. Harini; Gang Hu; David Huang; Junichi Iwakiri; Anika Jain; Yuki Kagaya; Daisuke Kihara; Sebastian Kmiecik; Sowmya Ramaswamy Krishnan; Ikuo Kurisaki; Olivier Languin-Cattoën; Jun Li; Shanshan Li; Karim Malekzadeh; Tsukasa Nakamura; Wentao Ni; Chandran Nithin; Michael Z. Palo; Joon Hong Park; Smita P. Pilla; Simón Poblete; Fabrizio Pucci; Pranav Punuru; Anouka Saha; Kengo Sato; Ambuj Srivastava; Genki Terashi; Emilia Tugolukova; Jacob Verburgt; Qiqige Wuyun; Gül H. Zerze; Kaiming Zhang; Sicheng Zhang; Wei Zheng; Yuanzhe Zhou; Wah Chiu; David A. Case; Rhiju Das
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Evaluation of single-template ligand-based methods for the discovery of small-molecule nucleic acid binders
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2025-11-01
err0
PREAI
errBajusz, David; Racz, Anita; Bujnicki, Janusz M.; Stefaniak, Filip
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errSave
MODOMICS: a database of RNA modifications and related information. 2025 update and 20th anniversary
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err1
errOAAI
errSordyl, Dominik; Boileau, Etienne; Bernat, Agata; Maiti, Satyabrata; Mukherjee, Sunandan; Moafinejad, S. Naeim; Farsani, Masoud Amiri; Shavina, Anastasiya; Cappannini, Andrea; Agostini, Giada; Conticello, Silvestro G.; Stefaniak, Filip; Dieterich, Christoph; Purta, Elzbieta; Bujnicki, Janusz M.
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errSave
Modeling flexible RNA 3D structures and RNA-protein complexes
errCurrent Opinion in Structural Biology
IF7
err2025-08-16
err0
errOAAI
errRui João Loureiro; Satyabrata Maiti; Kuntal Mondal; Sunandan Mukherjee; Janusz M. Bujnicki
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errSave
Structure of fungal tRNA ligase Trl1 with RNA reveals conserved substrate-binding principles
errNature Structural & Molecular Biology
IF10.1
err2025-06-25
err0
errOAAI
errSandra Köhler; Jürgen Kopp; Satyabrata Maiti; Janusz M. Bujnicki; Jirka Peschek
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errSave
Determining the effects of pseudouridine incorporation on human tRNAs
errEMBO JOURNAL
IF8.3
err2025-04-29
err0
errOAAI
errBiela, Anna D.; Nowak, Jakub S.; Biela, Artur P.; Mukherjee, Sunandan; Moafinejad, Seyed Naeim; Maiti, Satyabrata; Chramiec-Glabik, Andrzej; Mehta, Rahul; Jezowski, Jakub; Dobosz, Dominika; Dahate, Priyanka; Arluison, Veronique; Wien, Frank; Indyka, Paulina; Rawski, Michal; Bujnicki, Janusz M.; Lin, Ting-Yu; Glatt, Sebastian
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errSave
RNA-Puzzles Round V: blind predictions of 23 RNA structures
errNATURE METHODS
IF32.1
err2024-12-02
err0
errOAAI
errBu, Fan; Adam, Yagoub; Adamiak, Ryszard W.; Antczak, Maciej; de Aquino, Belisa Rebeca H.; Badepally, Nagendar Goud; Batey, Robert T.; Baulin, Eugene F.; Boinski, Pawel; Boniecki, Michal J.; Bujnicki, Janusz M.; Carpenter, Kristy A.; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K.; Dimaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V.; Dror, Ron O.; Dunin-Horkawicz, Stanislaw; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferre-D'Amare, Adrian R.; Geniesse, Caleb; Ghanim, George E.; Guzman, Horacio V.; Hood, Iris V.; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S.; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C.; Kurcinski, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, Benoit; Moafinejad, S. Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P. N.; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A.; Pilla, Smita Priyadarshini; Pluta, Radoslaw; Poblete, Simon; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C.; Szachniuk, Marta; Townshend, Raphael; Trachman III, Robert J.; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K.; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Zyla, Adriana; Westhof, Eric; Miao, Zhichao
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errSave
Sci-ModoM: a quantitative database of transcriptome-wide high-throughput RNA modification sites
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-05
err1
errOAAI
errBoileau, Etienne; Wilhelmi, Harald; Busch, Anne; Cappannini, Andrea; Hildebrand, Andreas; Bujnicki, Janusz M.; Dieterich, Christoph
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errSave
NAIRDB: a database of Fourier transform infrared (FTIR) data for nucleic acids
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-10-16
err1
errOAAI
errBalduzzi, Elsa; Geinguenaud, Frederic; Sordyl, Dominik; Maiti, Satyabrata; Farsani, Masoud Amiri; Nikolaev, Grigory; Arluison, Veronique; Bujnicki, Janusz M.
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errSave
The three YTHDF paralogs and VIRMA are strong cross-histotype tumor driver candidates among m6A core genes
errNAR CANCER
IF3.2
err2024-10-15
err0
errOAAI
errDestefanis, Eliana; Sighel, Denise; Dalfovo, Davide; Gilmozzi, Riccardo; Broso, Francesca; Cappannini, Andrea; Bujnicki, Janusz M.; Romanel, Alessandro; Dassi, Erik; Quattrone, Alessandro
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errSave
ARTEMIS: a method for topology-independent superposition of RNA 3D structures and structure-based sequence alignment
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-09-11
err1
errOAAI
errBohdan, Davyd R.; Bujnicki, Janusz M.; Baulin, Eugene F.
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errSave
Are there double knots in proteins? Prediction and in vitro verification based on TrmD-Tm1570 fusion from C. nitroreducens
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2024-06-06
err4
errOAAI
errPerlinska, Agata P.; Nguyen, Mai Lan; Pilla, Smita P.; Staszor, Emilia; Lewandowska, Iwona; Bernat, Agata; Purta, Elzbieta; Augustyniak, Rafal; Bujnicki, Janusz M.; Sulkowska, Joanna I.
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SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-05-13
err6
errOAAI
errMoafinejad, S. Naeim; de Aquino, Belisa R. H.; Boniecki, Michal J.; Jeyeram, Iswarya P. N. Pandaranadar; Nikolaev, Grigory; Magnus, Marcin; Farsani, Masoud Amiri; Badepally, Nagendar Goud; Wirecki, Tomasz K.; Stefaniak, Filip; Bujnicki, Janusz M.
errShare
errSave
DEGRONOPEDIA: a web server for proteome-wide inspection of degrons
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-04-03
err4
errOAAI
errSzulc, Natalia A.; Stefaniak, Filip; Piechota, Malgorzata; Soszynska, Anna; Piorkowska, Gabriela; Cappannini, Andrea; Bujnicki, Janusz M.; Maniaci, Chiara; Pokrzywa, Wojciech
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errSave
Conserved structures and dynamics in 5′-proximal regions of Betacoronavirus RNA genomes
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-03-01
err3
errOAAI
errde Moura, Tales Rocha; Purta, Elzbieta; Bernat, Agata; Martin-Cuevas, Eva M.; Kurkowska, Malgorzata; Baulin, Eugene F.; Mukherjee, Sunandan; Nowak, Jakub; Biela, Artur P.; Rawski, Michal; Glatt, Sebastian; Moreno-Herrero, Fernando; Bujnicki, Janusz M.
errShare
errSave
MODOMICS: a database of RNA modifications and related information. 2023 update
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-28
err75
errOAAI
errCappannini, Andrea; Ray, Angana; Purta, Elzbieta; Mukherjee, Sunandan; Boccaletto, Pietro; Moafinejad, S. Naeim; Lechner, Antony; Barchet, Charles; Klaholz, Bruno P.; Stefaniak, Filip; Bujnicki, Janusz M.
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errSave
A comprehensive survey of long-range tertiary interactions and motifs in non-coding RNA structures
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-07-20
err2
errOAAI
errBohdan, Davyd R.; Voronina, Valeria V.; Bujnicki, Janusz M.; Baulin, Eugene F.
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errSave
RNA target highlights in CASP15: Evaluation of predicted models by structure providers
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2023-07-19
err16
errOAAI
errKretsch, Rachael C. C.; Andersen, Ebbe S. S.; Bujnicki, Janusz M. M.; Chiu, Wah; Das, Rhiju; Luo, Bingnan; Masquida, Benoit; McRae, Ewan K. S.; Schroeder, Griffin M. M.; Su, Zhaoming; Wedekind, Joseph E. E.; Xu, Lily; Zhang, Kaiming; Zheludev, Ivan N. N.; Moult, John; Kryshtafovych, Andriy
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Structural interaction fingerprints and machine learning for predicting and explaining binding of small molecule ligands to RNA
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2023-05-18
err7
errOAAI
errSzulc, Natalia A.; Mackiewicz, Zuzanna; Bujnicki, Janusz M.; Stefaniak, Filip
errShare
errSave

Research Directions

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Co-authors
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