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Alfred Pühler

University of Bielefeld

101H-index
711Paper Count
4.8WCitation Count
Published Papers 246
Publication Date
Metagenomics-Toolkit: the flexible and efficient cloud-based metagenomics workflow featuring machine learning-enabled resource allocation
err2025-09-01
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PREAI
errBelmann, Peter; Osterholz, Benedikt; Kleinboelting, Nils; Puehler, Alfred; Schlueter, Andreas; Sczyrba, Alexander
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Sigma Factor Engineering in Actinoplanes sp. SE50/110: Expression of the Alternative Sigma Factor Gene ACSP50_0507 (σHAs) Enhances Acarbose Yield and Alters Cell Morphology
err2024-06-20
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errOAAI
errSchlueter, Laura; Busche, Tobias; Bondzio, Laila; Huetten, Andreas; Niehaus, Karsten; Schneiker-Bekel, Susanne; Puehler, Alfred; Kalinowski, Joern
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Role of MalQ Enzyme in a Reconstructed Maltose/Maltodextrin Pathway in Actinoplanes sp. SE50/110
err2024-06-18
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errOAAI
errMaerz, Camilla; Noelting, Sophia; Wollenschlaeger, Lars; Puehler, Alfred; Kalinowski, Jorn
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Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics
err2023-09-27
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errOAAI
errHassa, Julia; Tubbesing, Tom Jonas; Maus, Irena; Heyer, Robert; Benndorf, Dirk; Effenberger, Mathias; Henke, Christian; Osterholz, Benedikt; Beckstette, Michael; Puehler, Alfred; Sczyrba, Alexander; Schlueter, Andreas
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Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis
err2023-03-30
err9
errOAAI
errNelkner, Johanna; Huang, Liren; Lin, Timo W. W.; Schulz, Alexander; Osterholz, Benedikt; Henke, Christian; Blom, Jochen; Puehler, Alfred; Sczyrba, Alexander; Schlueter, Andreas
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The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses
err2022-11-09
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errOAAI
errMaus, Irena; Wibberg, Daniel; Belmann, Peter; Hahnke, Sarah; Huang, Liren; Sproeer, Cathrin; Bunk, Boyke; Blom, Jochen; Sczyrba, Alexander; Puehler, Alfred; Klocke, Michael; Schlueter, Andreas
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RcgA and RcgR, Two Novel Proteins Involved in the Conjugative Transfer of Rhizobial Plasmids
errMBIO
IF4.7
err2022-10-26
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errOAAI
errCastellani, Lucas G.; Luchetti, Abril; Nilsson, Juliet F.; Perez-Gimenez, Julieta; Struck, Ben; Schlueter, Andreas; Puehler, Alfred; Niehaus, Karsten; Romero, David; Pistorio, Mariano; Torres Tejerizo, Gonzalo
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Two Flagellar mutants of Xanthomonas campestris are characterized by enhanced xanthan production and higher xanthan viscosity
err2022-03-01
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errOAAI
errSteffens, Tim; Vorhoelter, Frank-Joerg; Teckentrup, Julia; Hublik, Gerd; Walhorn, Volker; Anselmetti, Dario; Puehler, Alfred; Niehaus, Karsten; Ortseifen, Vera
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ExoS/ChvI Two-Component Signal-Transduction System Activated in the Absence of Bacterial Phosphatidylcholine
err2021-07-23
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errOAAI
errGeiger, Otto; Sohlenkamp, Christian; Vera-Cruz, Diana; Medeot, Daniela B.; Martinez-Aguilar, Lourdes; Sahonero-Canavesi, Diana X.; Weidner, Stefan; Puehler, Alfred; Lopez-Lara, Isabel M.
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Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
err2021-07-07
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errOAAI
errHassa, Julia; Klang, Johanna; Benndorf, Dirk; Pohl, Marcel; Huelsemann, Benedikt; Maechtig, Torsten; Effenberger, Mathias; Puehler, Alfred; Schlueter, Andreas; Theuerl, Susanne
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Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
err2021-02-16
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errOAAI
errMayer, Gerhard; Mueller, Wolfgang; Schork, Karin; Uszkoreit, Julian; Weidemann, Andreas; Wittig, Ulrike; Rey, Maja; Quast, Christian; Felden, Janine; Gloeckner, Frank Oliver; Lange, Matthias; Arend, Daniel; Beier, Sebastian; Junker, Astrid; Scholz, Uwe; Schueler, Danuta; Kestler, Hans A.; Wibberg, Daniel; Puehler, Alfred; Twardziok, Sven; Eils, Juergen; Eils, Roland; Hoffmann, Steve; Eisenacher, Martin; Turewicz, Michael
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Exopolysaccharide Characterization of Rhizobium favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa
err2021-02-10
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errOAAI
errCastellani, Lucas G.; Luchetti, Abril; Nilsson, Juliet F.; Perez-Gimenez, Julieta; Wegener, Caren; Schluter, Andreas; Puhler, Alfred; Lagares, Antonio; Brom, Susana; Pistorio, Mariano; Niehaus, Karsten; Torres Tejerizo, Gonzalo A.
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The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
err2020-12-17
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errOAAI
errMaus, Irena; Tubbesing, Tom; Wibberg, Daniel; Heyer, Robert; Hassa, Julia; Tomazetto, Geizecler; Huang, Liren; Bunk, Boyke; Sproeer, Cathrin; Benndorf, Dirk; Zverlov, Vladimir; Puehler, Alfred; Klocke, Michael; Sczyrba, Alexander; Schlueter, Andreas
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The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase
err2020-11-23
err7
errOAAI
errDroste, Julian; Ortseifen, Vera; Schaffert, Lena; Persicke, Marcus; Schneiker-Bekel, Susanne; Puehler, Alfred; Kalinowski, Joern
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Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
err2020-11-21
err14
errOAAI
errNilsson, Juliet F.; Castellani, Lucas G.; Draghi, Walter O.; Mogro, Ezequiel G.; Wibberg, Daniel; Winkler, Anika; Hansen, L. H.; Schluter, Andreas; Puhler, Alfred; Kalinowski, Jorn; Tejerizo, Gonzalo A. Torres; Pistorio, Mariano
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A maltose-regulated large genomic region is activated by the transcriptional regulator MalT inActinoplanessp. SE50/110
err2020-09-28
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errOAAI
errDroste, Julian; Kulisch, Martin; Wolf, Timo; Schaffert, Lena; Schneiker-Bekel, Susanne; Puehler, Alfred; Kalinowski, Joern
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Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110
err2020-04-28
err7
errOAAI
errSchaffert, Lena; Schneiker-Bekel, Susanne; Gierhake, Jessica; Droste, Julian; Persicke, Marcus; Rosen, Winfried; Puehler, Alfred; Kalinowski, Joern
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Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
err2020-03-02
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errOAAI
errMaus, Irena; Klocke, Michael; Derenko, Jaqueline; Stolze, Yvonne; Beckstette, Michael; Jost, Carsten; Wibberg, Daniel; Blom, Jochen; Henke, Christian; Willenbuecher, Katharina; Rumming, Madis; Rademacher, Antje; Puehler, Alfred; Sczyrba, Alexander; Schlueter, Andreas
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