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Ex silico engineering of cystine-dense peptides yielding a potent bispecific T cell engager Crook, Zachary R.; Girard, Emily J.; Sevilla, Gregory P.; Brusniak, Mi-Youn; Rupert, Peter B.; Friend, Della J.; Gewe, Mesfin M.; Clarke, Midori; Lin, Ida; Ruff, Raymond; Pakiam, Fiona; Phi, Tinh-Doan; Bandaranayake, Ashok; Correnti, Colin E.; Mhyre, Andrew J.; Nairn, Natalie W.; Strong, Roland K.; Olson, James M. Share Save
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Optimal therapeutic targeting by HDAC inhibition in biopsy-derived treatment-naive diffuse midline glioma models Vitanza, Nicholas A.; Biery, Matt C.; Myers, Carrie; Ferguson, Eric; Zheng, Ye; Girard, Emily J.; Przystal, Justyna M.; Park, Giulia; Noll, Alyssa; Pakiam, Fiona; Winter, Conrad A.; Morris, Shelli M.; Sarthy, Jay; Cole, Bonnie L.; Leary, Sarah E. S.; Crane, Courtney; Lieberman, Nicole A. P.; Mueller, Sabine; Nazarian, Javad; Gottardo, Raphael; Brusniak, Mi-Youn; Mhyre, Andrew J.; Olson, James M. Share Save
A potent peptide-steroid conjugate accumulates in cartilage and reverses arthritis without evidence of systemic corticosteroid exposure Sangar, Michelle L. Cook; Girard, Emily J.; Hopping, Gene; Yin, Chunfeng; Pakiam, Fiona; Brusniak, Mi-Youn; Nguyen, Elizabeth; Ruff, Raymond; Gewe, Mesfin M.; Byrnes-Blake, Kelly; Nairn, Natalie W.; Miller, Dennis M.; Mehlin, Christopher; Strand, Andrew D.; Mhyre, Andrew J.; Correnti, Colin E.; Strong, Roland K.; Simon, Julian A.; Olson, James M. Share Save
Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets (vol 8, 2017) Crook, Zachary R.; Sevilla, Gregory P.; Friend, Della; Brusniak, Mi-Youn; Bandaranayake, Ashok D.; Clarke, Midori; Gewe, Mesfin; Mhyre, Andrew J.; Baker, David; Strong, Roland K.; Bradley, Philip; Olson, James M. Share Save
Screening, large-scale production and structure-based classification of cystine-dense peptides Correnti, Colin E.; Gewe, Mesfin M.; Mehlin, Christopher; Bandaranayake, Ashok D.; Johnsen, William A.; Rupert, Peter B.; Brusniak, Mi-Youn; Clarke, Midori; Burke, Skyler E.; De van der Schueren, Willem; Pilat, Kristina; Turnbaugh, Shanon M.; May, Damon; Watson, Alex; Chan, Man Kid; Bahl, Christopher D.; Olson, James M.; Strong, Roland K. Share Save
Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets Crook, Zachary R.; Sevilla, Gregory P.; Friend, Della; Brusniak, Mi-Youn; Bandaranayake, Ashok D.; Clarke, Midori; Gewe, Mesfin; Mhyre, Andrew J.; Baker, David; Strong, Roland K.; Bradley, Philip; Olson, James M. Share Save
A cross-platform toolkit for mass spectrometry and proteomics Chambers, Matthew C.; Maclean, Brendan; Burke, Robert; Amodei, Dario; Ruderman, Daniel L.; Neumann, Steffen; Gatto, Laurent; Fischer, Bernd; Pratt, Brian; Egertson, Jarrett; Hoff, Katherine; Kessner, Darren; Tasman, Natalie; Shulman, Nicholas; Frewen, Barbara; Baker, Tahmina A.; Brusniak, Mi-Youn; Paulse, Christopher; Creasy, David; Flashner, Lisa; Kani, Kian; Moulding, Chris; Seymour, Sean L.; Nuwaysir, Lydia M.; Lefebvre, Brent; Kuhlmann, Frank; Roark, Joe; Rainer, Paape; Detlev, Suckau; Hemenway, Tina; Huhmer, Andreas; Langridge, James; Connolly, Brian; Chadick, Trey; Holly, Krisztina; Eckels, Josh; Deutsch, Eric W.; Moritz, Robert L.; Katz, Jonathan E.; Agus, David B.; MacCoss, Michael; Tabb, David L.; Mallick, Parag Share Save
PASSEL: The PeptideAtlas SRM experiment library Farrah, Terry; Deutsch, Eric W.; Kreisberg, Richard; Sun, Zhi; Campbell, David S.; Mendoza, Luis; Kusebauch, Ulrike; Brusniak, Mi-Youn; Huettenhain, Ruth; Schiess, Ralph; Selevsek, Nathalie; Aebersold, Ruedi; Moritz, Robert L. Share Save
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TraML - A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists Deutsch, Eric W.; Chambers, Matthew; Neumann, Steffen; Levander, Fredrik; Binz, Pierre-Alain; Shofstahl, Jim; Campbell, David S.; Mendoza, Luis; Ovelleiro, David; Helsens, Kenny; Martens, Lennart; Aebersold, Ruedi; Moritz, Robert L.; Brusniak, Mi-Youn Share Save
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles) Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R.; Rodriguez, Henry Share Save
Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles) Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry Share Save
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Phosphoproteomic Analysis Reveals Interconnected System-Wide Responses to Perturbations of Kinases and Phosphatases in Yeast Bodenmiller, Bernd; Wanka, Stefanie; Kraft, Claudine; Urban, Joerg; Campbell, David; Pedrioli, Patrick G.; Gerrits, Bertran; Picotti, Paola; Lam, Henry; Vitek, Olga; Brusniak, Mi-Youn; Roschitzki, Bernd; Zhang, Chao; Shokat, Kevan M.; Schlapbach, Ralph; Colman-Lerner, Alejandro; Nolan, Garry P.; Nesvizhskii, Alexey I.; Peter, Matthias; Loewith, Robbie; von Mering, Christian; Aebersold, Ruedi Share Save
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Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring Lange, Vinzenz; Malmstroem, Johan A.; Didion, John; King, Nichole L.; Johansson, Bjoern P.; Schaefer, Juliane; Rameseder, Jonathan; Wong, Chee-Hong; Deutsch, Eric W.; Brusniak, Mi-Youn; Buehlmann, Peter; Bjoerck, Lars; Domon, Bruno; Aebersold, Ruedi Share Save
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