Ramūnas Stepanauskas - Publications, H-index & Citations

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Ramūnas Stepanauskas

University of California System

74H-index

248Paper Count

2.5WCitation Count

Published Papers 106

Publication Date

Author Correction: Single-particle genomics uncovers abundant non-canonical marine viruses from nanolitre volumes

Nature Microbiology

IF19.4

2025-12-15

OAAI

Alaina R. Weinheimer; Julia M. Brown; Brian Thompson; Greta Leonaviciene; Vaidotas Kiseliovas; Simonas Jocys; Jacob Munson-McGee; Gregory Gavelis; Corianna Mascena; Linas Mazutis; Nicole J. Poulton; Rapolas Zilionis; Ramunas Stepanauskas

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Single-particle genomics uncovers abundant non-canonical marine viruses from nanolitre volumes

Nature Microbiology

IF19.4

2025-11-05

OAAI

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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment

ISME JOURNAL

IF10

2025-03-09

PREAI

Melody R Lindsay; Timothy D’Angelo; Elizabeth Goodell; Jacob H Munson-McGee; Melissa Herring; Michael Budner; Julia M Brown; Gregory S Gavelis; Corianna Mascena; Laura C Lubelczyk; Nicole J Poulton; Ramunas Stepanauskas; Beth N Orcutt; David Emerson

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Net rate of lateral gene transfer in marine prokaryoplankton

ISME JOURNAL

IF10

2025-01-01

OAAI

Stepanauskas, Ramunas; Brown, Julia M.; Arasti, Shayesteh; Mai, Uyen; Gavelis, Gregory; Pachiadaki, Maria; Bezuidt, Oliver; Munson-McGee, Jacob H.; Chang, Tianyi; Biller, Steven J.; Berube, Paul M.; Mirarab, Siavash

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Genomic representativeness and chimerism in large collections of SAGs and MAGs of marine prokaryoplankton

MICROBIOME

IF12.7

2024-07-15

OAAI

Chang, Tianyi; Gavelis, Gregory S.; Brown, Julia M.; Stepanauskas, Ramunas

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Fluorometric Analysis of Carrier-Protein-Dependent Biosynthesis through a Conformationally Sensitive Solvatochromic Pantetheinamide Probe

ACS CHEMICAL BIOLOGY

IF3.8

2024-06-23

PREAI

Miyada, Matthew G.; Choi, Yuran; Stepanauskas, Ramunas; Woyke, Tanja; La Clair, James J.; Burkart, Michael D.

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Species- resolved, single- cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-04-04

PREAI

Lindsay, Melody R.; D'Angelo, Timothy; Munson-McGee, Jacob H.; Saidi-Mehrabad, Alireza; Devlin, Molly; McGonigle, Julia; Goodell, Elizabeth; Herring, Melissa; Lubelczyk, Laura C.; Mascena, Corianna; Brown, Julia M.; Gavelis, Greg; Liu, Jiarui; Yousavich, D. J.; Brehm, Scott D. Hamilton -; Hedlund, Brian P.; Lang, Susan; Treude, Tina; Poulton, Nicole J.; Stepanauskas, Ramunas; Moser, Duane P.; Emerson, David; Orcutt, Beth N.

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Interplay between autotrophic and heterotrophic prokaryotic metabolism in the bathypelagic realm revealed by metatranscriptomic analyses

MICROBIOME

IF12.7

2023-11-04

OAAI

Srivastava, Abhishek; De Corte, Daniele; Garcia, Juan A. L.; Swan, Brandon K.; Stepanauskas, Ramunas; Herndl, Gerhard J.; Sintes, Eva

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Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes

MSYSTEMS

IF4.6

2023-06-29

OAAI

Haro-Moreno, Jose M.; Lopez-Perez, Mario; Alekseev, Alexey; Podoliak, Elizaveta; Kovalev, Kirill; Gordeliy, Valentin; Stepanauskas, Ramunas; Rodriguez-Valera, Francisco

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Life strategies for Aminicenantia in subseafloor oceanic crust

ISME JOURNAL

IF10

2023-06-16

OAAI

Booker, Anne E.; D'Angelo, Timothy; Adams-Beyea, Annabelle; Brown, Julia M.; Nigro, Olivia; Rappe, Michael S.; Stepanauskas, Ramunas; Orcutt, Beth N.

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Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium

MICROBIOME

IF12.7

2023-06-13

OAAI

Dzunkova, Maria; La Clair, James J.; Tyml, Tomas; Doud, Devin; Schulz, Frederik; Piquer-Esteban, Samuel; Sanchis, Dafne Porcel; Osborn, Andrew; Robinson, David; Louie, Katherine B.; Bowen, Ben P.; Bowers, Robert M.; Lee, Janey; Arnau, Vicente; Diaz-Villanueva, Wladimiro; Stepanauskas, Ramunas; Gosliner, Terrence; Date, Shailesh V.; Northen, Trent R.; Cheng, Jan-Fang; Burkart, Michael D.; Woyke, Tanja

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Phosphonate production by marine microbes: Exploring new sources and potential function

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2022-03-07

OAAI

Acker, Marianne; Hogle, Shane L.; Berube, Paul M.; Hackl, Thomas; Coe, Allison; Stepanauskas, Ramunas; Chisholm, Sallie W.; Repeta, Daniel J.

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Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume

FRONTIERS IN MICROBIOLOGY

IF4.5

2022-01-24

OAAI

D'Angelo, Timothy; Goordial, Jacqueline; Poulton, Nicole J.; Seyler, Lauren; Huber, Julie A.; Stepanauskas, Ramunas; Orcutt, Beth N.

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Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf

NATURE COMMUNICATIONS

IF15.7

2022-01-10

OAAI

Martinez-Perez, Clara; Greening, Chris; Bay, Sean K.; Lappan, Rachael J.; Zhao, Zihao; De Corte, Daniele; Hulbe, Christina; Ohneiser, Christian; Stevens, Craig; Thomson, Blair; Stepanauskas, Ramunas; Gonzalez, Jose M.; Logares, Ramiro; Herndl, Gerhard J.; Morales, Sergio E.; Baltar, Federico

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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

ISME JOURNAL

IF10

2021-12-30

OAAI

Bowers, Robert M.; Nayfach, Stephen; Schulz, Frederik; Jungbluth, Sean P.; Ruhl, Ilona A.; Sheremet, Andriy; Lee, Janey; Goudeau, Danielle; Eloe-Fadrosh, Emiley A.; Stepanauskas, Ramunas; Malmstrom, Rex R.; Kyrpides, Nikos C.; Dunfield, Peter F.; Woyke, Tanja

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Clean room microbiome complexity impacts planetary protection bioburden

MICROBIOME

IF12.7

2021-12-04

OAAI

Hendrickson, Ryan; Urbaniak, Camilla; Minich, Jeremiah J.; Aronson, Heidi S.; Martino, Cameron; Stepanauskas, Ramunas; Knight, Rob; Venkateswaran, Kasthuri

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Microbial Diversity and Function in Shallow Subsurface Sediment and Oceanic Lithosphere of the Atlantis Massif

MBIO

IF4.7

2021-08-31

OAAI

Goordial, J.; D'Angelo, T.; Labonte, J. M.; Poulton, N. J.; Brown, J. M.; Stepanauskas, R.; Fruh-Green, G. L.; Orcutt, B. N.

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Genomic Variation Influences Methanothermococcus Fitness in Marine Hydrothermal Systems

FRONTIERS IN MICROBIOLOGY

IF4.5

2021-08-20

OAAI

Hoffert, Michael; Anderson, Rika E. E.; Reveillaud, Julie; Murphy, Leslie G. G.; Stepanauskas, Ramunas; Huber, Julie A. A.

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Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities

MBIO

IF4.7

2021-06-29

OAAI

Murphy, Chelsea L.; Sheremet, Andriy; Dun, Peter F.; Spear, John R.; Stepanauskas, Ramunas; Woyke, Tanja; Elshahed, Mostafa S.; Youssef, Noha H.

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Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics

ACS CHEMICAL BIOLOGY

IF3.8

2021-05-06

OAAI

Kim, Woojoo E.; Charov, Katherine; Dzunkova, Maria; Becraft, Eric D.; Brown, Julia; Schulz, Frederik; Woyke, Tanja; La Clair, James J.; Stepanauskas, Ramunas; Burkart, Michael D.

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Research Directions