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Inferring Gene Regulatory Networks From Single-Cell RNA Sequencing Data by Dual-Role Graph Contrastive Learning Guan, Qiyuan; Yu, Jiating; Pan, Jieyi; Yuan, Fan; Ji, Jiadong; Zhao, Rusong; Liu, Zhi-Ping; Liu, Bingqiang; Wu, Ling-Yun; Sun, Duanchen Share Save
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CDK9 inhibition induces epigenetic reprogramming revealing strategies to circumvent resistance in lymphoma Thieme, Elana; Bruss, Nur; Sun, Duanchen; Dominguez, Edward C.; Coleman, Daniel; Liu, Tingting; Roleder, Carly; Martinez, Melissa; Garcia-Mansfield, Krystine; Ball, Brian; Pirrotte, Patrick; Wang, Lili; Xia, Zheng; Danilov, Alexey V. Share Save
Transcriptional profiling of matched patient biopsies clarifies molecular determinants of enzalutamide-induced lineage plasticity Westbrook, Thomas C.; Guan, Xiangnan; Rodansky, Eva; Flores, Diana; Liu, Chia Jen; Udager, Aaron M.; Patel, Radhika A.; Haffner, Michael C.; Hu, Ya-Mei; Sun, Duanchen; Beer, Tomasz M.; Foye, Adam; Aggarwal, Rahul; Quigley, David A.; Youngren, Jack F.; Ryan, Charles J.; Gleave, Martin; Wang, Yuzhuo; Huang, Jiaoti; Coleman, Ilsa; Morrissey, Colm; Nelson, Peter S.; Evans, Christopher P.; Lara, Primo; Reiter, Robert E.; Witte, Owen; Rettig, Matthew; Wong, Christopher K.; Weinstein, Alana S.; Uzunangelov, Vlado; Stuart, Josh M.; Thomas, George, V; Feng, Felix Y.; Small, Eric J.; Yates, Joel A.; Xia, Zheng; Alumkal, Joshi J. Share Save
A Cancer Cell-Intrinsic GOT2-PPARδ Axis Suppresses Antitumor Immunity Abrego, Jaime; Sanford-Crane, Hannah; Oon, Chet; Xiao, Xu; Betts, Courtney B.; Sun, Duanchen; Nagarajan, Shanthi; Diaz, Luis; Sandborg, Holly; Bhattacharyya, Sohinee; Xia, Zheng; Coussens, Lisa M.; Tontonoz, Peter; Sherman, Mara H. Share Save
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data Sun, Duanchen; Guan, Xiangnan; Moran, Amy E.; Wu, Ling-Yun; Qian, David Z.; Schedin, Pepper; Dai, Mu-Shui; Danilov, Alexey, V; Alumkal, Joshi J.; Adey, Andrew C.; Spellman, Paul T.; Xia, Zheng Share Save
Postpartum breast cancer has a distinct molecular profile that predicts poor outcomes Jindal, Sonali; Pennock, Nathan D.; Sun, Duanchen; Horton, Wesley; Ozaki, Michelle K.; Narasimhan, Jayasri; Bartlett, Alexandra Q.; Weinmann, Sheila; Goss, Paul E.; Borges, Virginia F.; Xia, Zheng; Schedin, Pepper Share Save
Alternative splicing of LSD1+8a in neuroendocrine prostate cancer is mediated by SRRM4 Coleman, Daniel J.; Sampson, David A.; Sehrawat, Archana; Kumaraswamy, Anbarasu; Sun, Duanchen; Wang, Yuzhuo; Schwartzman, Jacob; Urrutia, Joshua; Lee, Ahn R.; Coleman, Ilsa M.; Nelson, Peter S.; Dong, Xuesen; Morrissey, Colm; Corey, Eva; Xia, Zheng; Yates, Joel A.; Alumkal, Joshi J. Share Save
Transcriptional profiling identifies an androgen receptor activity-low, stemness program associated with enzalutamide resistance Alumkal, Joshi J.; Sun, Duanchen; Lu, Eric; Beer, Tomasz M.; Thomas, George V.; Latour, Emile; Aggarwal, Rahul; Cetnar, Jeremy; Ryan, Charles J.; Tabatabaei, Shaadi; Bailey, Shawna; Turina, Claire B.; Quigley, David A.; Guan, Xiangnan; Foye, Adam; Youngren, Jack F.; Urrutia, Joshua; Huang, Jiaoti; Weinstein, Alana S.; Friedl, Verena; Rettig, Matthew; Reiter, Robert E.; Spratt, Daniel E.; Gleave, Martin; Evans, Christopher P.; Stuart, Joshua M.; Chen, Yiyi; Feng, Felix Y.; Small, Eric J.; Witte, Owen N.; Xia, Zheng Share Save
Genomic Drivers of Poor Prognosis and Enzalutamide Resistance in Metastatic Castration-resistant Prostate Cancer Chen, William S.; Aggarwal, Rahul; Zhang, Li; Zhao, Shuang G.; Thomas, George, V; Beer, Tomasz M.; Quigley, David A.; Foye, Adam; Playdle, Denise; Huang, Jiaoti; Lloyd, Paul; Lu, Eric; Sun, Duanchen; Guan, Xiangnan; Rettig, Matthew; Gleave, Martin; Evans, Christopher P.; Youngren, Jack; True, Lawrence; Lara, Primo N.; Kothari, Vishal; Xia, Zheng; Chi, Kim N.; Reiter, Robert E.; Maher, Christopher A.; Feng, Felix Y.; Small, Eric J.; Alumkal, Joshi J. Share Save
BET bromodomain inhibition blocks the function of a critical AR-independent master regulator network in lethal prostate cancer Coleman, Daniel J.; Gao, Lina; King, Carly J.; Schwartzman, Jacob; Urrutia, Joshua; Sehrawat, Archana; Tayou, Junior; Balter, Ariel; Burchard, Julja; Chiotti, Kami E.; Derrick, Daniel S.; Sun, Duanchen; Xia, Zheng; Heiser, Laura M.; Alumkal, Joshi J. Share Save
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Highly scalable generation of DNA methylation profiles in single cells Mulqueen, Ryan M.; Pokholok, Dmitry; Norberg, Steven J.; Torkenczy, Kristof A.; Fields, Andrew J.; Sun, Duanchen; Sinnamon, John R.; Shendure, Jay; Trapnell, Cole; O'Roak, Brian J.; Xia, Zheng; Steemers, Frank J.; Adey, Andrew C. Share Save
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