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Sina Majidian

johns hopkins university

11H-index
54Paper Count
415Citation Count
Published Papers 17
Publication Date
Hub genes and their post-transcriptional controllers in Tanacetum parthenium’s MEP and MEV biosynthetic pathways
errHeliyon
IF3.6
err2026-02-04
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errOAAI
errKarim Farmanpour Kalalagh; Sina Majidian; Alireza Babaei; Arman Beyraghdar Kashkooli
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Reconstructing Evolutionary Histories with Hierarchical Orthologous Groups (nov, 10.1007/s00239-025-10277-1, 2025)
err2025-12-01
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errOAAI
errSarton-Loheac, Garance; Romashchenko, Nikolai; Train, Clement Marie; Majidian, Sina; Glover, Natasha
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Reconstructing Evolutionary Histories with Hierarchical Orthologous Groups
err2025-11-01
err2
PREAI
errSarton-Loheac, Garance; Romashchenko, Nikolai; Train, Clement Marie; Majidian, Sina; Glover, Natasha
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Quest for Orthologs in the era of Data Deluge and AI: Challenges and Innovations in Orthology Prediction and Data Integration
err2025-10-01
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errOAAI
errMajidian, Sina; Hadziahmetovic, Armin; Langschied, Felix; Pascarelli, Stefano; Prieto-Banos, Silvia; Rojas-Vargas, Jorge; Braun, Edward L.; Dessimoz, Christophe; Diallo, Abdoulaye Banire; Durand, Dannie; Fang, Gang; Gabaldon, Toni; Glover, Natasha; Liberles, David A.; McWhite, Claire; Sonnhammer, Erik L. L.; Thomas, Paul D.; Ouangraoua, Aida; Julca, Irene
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OrthoXML-Tools: A Toolkit for Manipulating OrthoXML Files for Orthology Data
err2025-09-01
err3
PREAI
errYazdizadeh Kharrazi, Ali; Altenhoff, Adrian M.; Romashchenko, Nikolai; Dessimoz, Christophe; Majidian, Sina
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EvANI benchmarking workflow for evolutionary distance estimation
err2025-05-01
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PREAI
errMajidian, Sina; Hwang, Stephen; Zakeri, Mohsen; Langmead, Ben
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New developments for the Quest for Orthologs benchmark service
err2024-12-11
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errOAAI
errAltenhoff, Adrian; Nevers, Yannis; Tran, Vinh; Jyothi, Dushyanth; Martin, Maria; Cosentino, Salvatore; Majidian, Sina; Marcet-Houben, Marina; Fuentes-Palacios, Diego; Persson, Emma; Walsh, Thomas; Lecompte, Odile; Gabaldon, Toni; Kelly, Steven; Hu, Yanhui; Iwasaki, Wataru; Capella-Gutierrez, Salvador; Dessimoz, Christophe; Thomas, Paul D.; Ebersberger, Ingo; Sonnhammer, Erik
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The GIAB genomic stratifications resource for human reference genomes
err2024-10-19
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errOAAI
errDwarshuis, Nathan; Kalra, Divya; McDaniel, Jennifer; Sanio, Philippe; Jerez, Pilar Alvarez; Jadhav, Bharati; Huang, Wenyu (Eddy); Mondal, Rajarshi; Busby, Ben; Olson, Nathan D.; Sedlazeck, Fritz J.; Wagner, Justin; Majidian, Sina; Zook, Justin M.
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Quest for Orthologs in the Era of Biodiversity Genomics
err2024-10-15
err0
errOAAI
errLangschied, Felix; Bordin, Nicola; Cosentino, Salvatore; Fuentes-Palacios, Diego; Glover, Natasha; Hiller, Michael; Hu, Yanhui; Huerta-Cepas, Jaime; Coelho, Luis Pedro; Iwasaki, Wataru; Majidian, Sina; Manzano-Morales, Saioa; Persson, Emma; Richards, Thomas A.; Gabaldon, Toni; Sonnhammer, Erik; Thomas, Paul D.; Dessimoz, Christophe; Ebersberger, Ingo
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When less is more: sketching with minimizers in genomics
err2024-10-14
err1
errOAAI
errNdiaye, Malick; Prieto-Banos, Silvia; Fitzgerald, Lucy M.; Kharrazi, Ali Yazdizadeh; Oreshkov, Sergey; Dessimoz, Christophe; Sedlazeck, Fritz J.; Glover, Natasha; Majidian, Sina
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Transcriptomic data reveals the dynamics of terpenoids biosynthetic pathway of fenugreek
err2024-04-22
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errOAAI
errJavan, Sara Lamei; Kashkooli, Arman Beyraghdar; Shojaeiyan, Abdolali; Majidian, Sina
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OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
err2023-11-14
err12
errOAAI
errAltenhoff, Adrian M.; Vesztrocy, Alex Warwick; Bernard, Charles; Train, Clement-Marie; Nicheperovich, Alina; Banos, Silvia Prieto; Julca, Irene; Moi, David; Nevers, Yannis; Majidian, Sina; Dessimoz, Christophe; Glover, Natasha M.
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Genomic variant benchmark: if you cannot measure it, you cannot improve it
err2023-10-05
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errOAAI
errMajidian, Sina; Agustinho, Daniel Paiva; Chin, Chen-Shan; Sedlazeck, Fritz J.; Mahmoud, Medhat
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Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree
err2023-04-20
err15
errOAAI
errDylus, David; Altenhoff, Adrian; Majidian, Sina; Sedlazeck, Fritz J.; Dessimoz, Christophe
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Responses of cucumber (Cucumis sativus L.) rhizosphere microbial community to some agronomic management practices
err2021-07-21
err9
PREAI
errEzazi, Robab; Ahmadzadeh, Masoud; Majidian, Sina; Stefani, Erika; Pindo, Massimo; Donati, Claudio
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Haplotype Assembly Using Manifold Optimization and Error Correction Mechanism
err2019-06-01
err3
errOAAI
errMohades, Mohamad Mahdi; Majidian, Sina; Kahaei, Mohammad Hossein
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