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Thomas Metz

pacific northwest national laboratory

78H-index
2.6KPaper Count
2.1WCitation Count
Published Papers 137
Publication Date
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Advancing FAIR data towards comparable, organized, predictive AI-ready data for community validation
errCommunications Biology
IF5.1
err2026-07-18
err0
errOAAI
errElisha M. Wood-Charlson; Wolmar N. Åkerström; Lindsey Anderson; Mikayla A. Borton; Stephen K. Burley; Neil Byers; Ishwar Chandramouliswaran; Sylvain V. Costes; Paramvir S. Dehal; Mitchel Doktycz; Emiley Eloe-Fadrosh; Christopher Henry; Kjiersten Fagnan; Oliver Fiehn; Mahantesh Halappanavar; Bonnie Hurwitz; Marcin P. Joachimiak; Sean Jungbluth; Julia Koblitz; Gazi Mahmud; Lee Ann McCue; Thomas O. Metz; Nigel Mouncey; Christopher J. Mungall; Tiffanie M. Nelson; Valerie Skye; Amanda M. Saravia-Butler; V. Ratna Saripalli; Susannah G. Tringe; Tim Van Den Bossche; Adam P. Arkin
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errSave
Assessing Extracellular Vesicle Proteins as Predictive Biomarkers for Developing Type 1 Diabetes
errProteomics
IF3.9
err2026-05-20
err0
errOAAI
errPanshak P. Dakup; Lisa M. Bramer; Athena Schepmoes; Ivo Diaz Ludovico; Javier Flores; Raghavendra G. Mirmira; Bobbie-Jo M. Webb-Robertson; Thomas O. Metz; Emily K. Sims; Ernesto S. Nakayasu
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errSave
Xanthohumol Alters Gut Microbiota Metabolism and Bile Acid Dynamics in Gastrointestinal Simulation Models of Eubiotic and Dysbiotic States
errInternational Journal of Molecular Sciences
IF4.9
err2026-03-03
err0
errOAAI
errPaige E. Jamieson; Nicholas J. Reichart; Claudia S. Maier; Thomas J. Sharpton; Ryan Bradley; Thomas O. Metz; Jan F. Stevens
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errSave
Determination of the pyrrolo[2,3-d] pyrimidine antifolate AGF94 from a preclinical murine study using a simple UHPLC-MS/MS assay
errJournal of Chromatography B
IF0
err2025-10-21
err0
PREAI
errTryston T. Metz; Rachel C. Ashe; Alexis C. Duncan; Ethan C. Wilner; Keith T. Schmidt; Kristbjorn O. Gudmundsson; Zhanjun Hou; Aleem Gangjee; Larry H. Matherly; Serguei V. Kozlov; William D. Figg
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errSave
Genetic mapping of complement system proteins for islet autoimmunity in children with high risk of T1D
errCommunications Biology
IF5.1
err2025-09-26
err0
errOAAI
errXiaowei Hu; Bobbie-Jo M. Webb-Robertson; Hemang M. Parikh; Ernesto S. Nakayasu; Suna Onengut-Gumuscu; Wei-Min Chen; Ashley Frazer-Abel; Thomas O. Metz; Stephen S. Rich; Marian J. Rewers; Ani Manichaikul
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errSave
Challenges and Opportunities in State-of-the-Art Proteomics Analysis for Biomarker Development From Plasma Extracellular Vesicles
errPROTEOMICS
IF3.9
err2025-09-16
err0
errOAAI
errPanshak P. Dakup; Ivo Diaz Ludovico; Youngki You; Chaitra Rao; Javier Flores; Lisa M. Bramer; Marian Rewers; Bobbie-Jo M. Webb-Robertson; Thomas O. Metz; Raghavendra G. Mirmira; Emily K. Sims; Ernesto S. Nakayasu
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errSave
Mid-day photomixotrophy by Roseiflexus spp. and implications for the 13C content of hot spring cyanobacterial mats
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2025-09-01
err0
errOAAI
errMoran, James J.; Ilhardt, Peter D.; Couvillion, Sneha P.; Lipton, Mary S.; Metz, Thomas O.; Tolic, Nikola; Bryant, Donald A.; Ward, David M.
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errSave
Dysregulation of lung epithelial cell homeostasis and immunity contributes to Middle East respiratory syndrome coronavirus disease severity
errMSPHERE
IF3.1
err2025-02-25
err0
errOAAI
errSims, Amy C.; Schafer, Alexandra; Okuda, Kenichi; Leist, Sarah R.; Kocher, Jacob F.; Cockrell, Adam S.; Hawkins, Padraig E.; Furusho, Minako; Jensen, Kara L.; Kyle, Jennifer E.; Burnum-Johnson, Kristin E.; Stratton, Kelly G.; Lamar, Natalie C.; Niccora, Carrie D.; Weitz, Karl K.; Smith, Richard D.; Metz, Thomas O.; Waters, Katrina M.; Boucher, Richard C.; Montgomery, Stephanie A.; Baric, Ralph S.; Sheahan, Timothy P.
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errSave
Introducing Identification Probability for Automated and Transferable Assessment of Metabolite Identification Confidence in Metabolomics and Related Studies
errANALYTICAL CHEMISTRY
IF6.7
err2024-12-19
err0
errOAAI
errMetz, Thomas O.; Chang, Christine H.; Gautam, Vasuk; Anjum, Afia; Tian, Siyang; Wang, Fei; Colby, Sean M.; Nunez, Jamie R.; Blumer, Madison R.; Edison, Arthur S.; Fiehn, Oliver; Jones, Dean P.; Li, Shuzhao; Morgan, Edward T.; Patti, Gary J.; Ross, Dylan H.; Shapiro, Madelyn R.; Williams, Antony J.; Wishart, David S.
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errSave
Exploring new frontiers in type 1 diabetes through advanced mass-spectrometry-based molecular measurements
errTrends in Molecular Medicine
IF13.8
err2024-12-01
err0
PREAI
errSarkar, Soumyadeep; Zheng, Xueyun; Clair, Geremy C.; Kwon, Yu Mi; You, Youngki; Swensen, Adam C.; Webb-Robertson, Bobbie-Jo M.; Nakayasu, Ernesto S.; Qian, Wei-Jun; Metz, Thomas O.
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errSave
Associations between SARS-CoV-2 Infection or COVID-19 Vaccination and Human Milk Composition: A Multi-Omics Approach
errJOURNAL OF NUTRITION
IF3.8
err2024-12-01
err0
errOAAI
errCouvillion, Sneha P.; Nakayasu, Ernesto S.; Webb-Robertson, Bobbie-Jo M.; Yang, Isabella H.; Eder, Josie G.; Nicora, Carrie; Bramer, Lisa M.; Gao, Yuqian; Fox, Alisa; Decarlo, Claire; Yang, Xiaoqi; Zhou, Mowei; Pace, Ryan M.; Williams, Janet E.; Mcguire, Mark A.; Mcguire, Michelle K.; Metz, Thomas; Powell, Rebecca L. R.
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errSave
Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors
errMETABOLOMICS
IF3.3
err2024-11-04
err0
PREAI
errCruz, Abraham Kuri; Alves, Marina Amaral; Andresson, Thorkell; Bayless, Amanda L.; Bloodsworth, Kent J.; Bowden, John A.; Bullock, Kevin; Burnet, Meagan C.; Carnevale Neto, Fausto; Choy, Angelina; Clish, Clary B.; Couvillion, Sneha P.; Cumeras, Raquel; Dailey, Lucas; Dallmann, Guido; Davis, W. Clay; Deik, Amy A.; Dickens, Alex M.; Djukovic, Danijel; Dorrestein, Pieter C.; Eder, Josie G.; Fiehn, Oliver; Flores, Roberto; Gika, Helen; Hagiwara, Kehau A.; Pham, Tuan Hai; Harynuk, James J.; Aristizabal-Henao, Juan J.; Hoyt, David W.; Jean-Francois, Focant; Krakstrom, Matilda; Kumar, Amit; Kyle, Jennifer E.; Lamichhane, Santosh; Li, Yuan; Nam, Seo Lin; Mandal, Rupasri; de la Mata, A. Paulina; Meehan, Michael J.; Meikopoulos, Thomas; Metz, Thomas O.; Mouskeftara, Thomai; Munoz, Nathalie; Gowda, G. A. Nagana; Oresic, Matej; Panitchpakdi, Morgan; Pierre-Hugues, Stefanuto; Raftery, Daniel; Rushing, Blake; Schock, Tracey; Seifried, Harold; Servetas, Stephanie; Shen, Tong; Sumner, Susan; Carrillo, Kieran S. Tarazona; Thibaut, Dejong; Trejo, Jesse B.; Van Meulebroek, Lieven; Vanhaecke, Lynn; Virgiliou, Christina; Weldon, Kelly C.; Wishart, David S.; Zhang, Lu; Zheng, Jiamin; Da Silva, Sandra
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The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data
errJOURNAL OF LIPID RESEARCH
IF4.1
err2024-09-01
err5
errOAAI
errKopczynski, Dominik; Ejsing, Christer S.; Mcdonald, Jeffrey G.; Bamba, Takeshi; Baker, Erin S.; Bertrand-Michel, Justine; Bruegger, Britta; Coman, Cristina; Ellis, Shane R.; Garrett, Timothy J.; Griffiths, William J.; Li Guan, Xue; Han, Xianlin; Hoering, Marcus; Holcapek, Michal; Hoffmann, Nils; Huynh, Kevin; Lehmann, Rainer; Jones, Jace W.; Kaddurah-Daouk, Rima; Koefeler, Harald C.; Meikle, Peter J.; Metz, Thomas O.; O'Donnell, Valerie B.; Saigusa, Daisuke; Schwudke, Dominik; Shevchenko, Andrej; Torta, Federico; Vizcaino, Juan Antonio; Welti, Ruth; Wenk, Markus R.; Wolrab, Denise; Xia, Yu; Ekroos, Kim; Ahrends, Robert; Liebisch, Gerhard
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An outbreak of renal failure in asian dogs due to s-triazine adulteration of pet food raw material: Analysis of unique, green kidney stones formed as a result
errFOOD AND CHEMICAL TOXICOLOGY
IF3.5
err2024-09-01
err1
PREAI
errCampbell, James A.; Franz, James A.; Romanczyk, Leo J.; Wunschel, David J.; Metz, Thomas O.; Petersen, Catherine E.
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errSave
High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage
errENVIRONMENTAL SCIENCE & TECHNOLOGY
IF11.3
err2024-07-10
err2
errOAAI
errLai, Yunjia; Koelmel, Jeremy P.; Walker, Douglas I.; Price, Elliott J.; Papazian, Stefano; Manz, Katherine E.; Castilla-Fernandez, Delia; Bowden, John A.; Nikiforov, Vladimir; David, Arthur; Bessonneau, Vincent; Amer, Bashar; Seethapathy, Suresh; Hu, Xin; Lin, Elizabeth Z.; Jbebli, Akrem; McNeil, Brooklynn R.; Barupal, Dinesh; Cerasa, Marina; Xie, Hongyu; Kalia, Vrinda; Nandakumar, Renu; Singh, Randolph; Tian, Zhenyu; Gao, Peng; Zhao, Yujia; Froment, Jean; Rostkowski, Pawel; Dubey, Saurabh; Coufalikova, Katerina; Selicova, Hana; Hecht, Helge; Liu, Sheng; Udhani, Hanisha H.; Restituito, Sophie; Tchou-Wong, Kam-Meng; Lu, Kun; Martin, Jonathan W.; Warth, Benedikt; Pollitt, Krystal J. Godri; Klanova, Jana; Fiehn, Oliver; Metz, Thomas O.; Pennell, Kurt D.; Jones, Dean P.; Miller, Gary W.
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Elucidating the Gas-Phase Behavior of Nitazene Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry
errJOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
IF2.7
err2024-06-22
err1
PREAI
errHollerbach, Adam L.; Lin, Vivian S.; Ibrahim, Yehia M.; Ewing, Robert G.; Metz, Thomas O.; Rodda, Kabrena E.
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Inflammation-Induced Repression of Insulin Production by Targeting Its mRNA to Stress Granules via ADP-Ribosylation Machinery
errDIABETES
IF7.5
err2024-06-14
err0
PREAI
errSarkar, Soumyadeep; Li, Fangjia; Elliott, Emily; Ramos-Rodriguez, Mireia; You, Youngki; Pasquali, Lorenzo; Sussel, Lori; Metz, Thomas; Mirmira, Raghavendra G.; Nakayasu, Ernesto
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errSave
Identification of Unique Fragmentation Patterns of Fentanyl Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry
errJOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
IF2.7
err2024-03-12
err4
PREAI
errHollerbach, Adam L.; Ibrahim, Yehia M.; Lin, Vivian S.; Schultz, Katherine J.; Huntley, Adam P.; Armentrout, P. B.; Metz, Thomas O.; Ewing, Robert G.
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errSave
DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-02-27
err0
PREAI
errOostrom, Marjolein T.; Colby, Sean M.; Metz, Thomas O.
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errSave
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics
errMETABOLITES
IF3.7
err2024-02-15
err1
errOAAI
errHabra, Hani; Meijer, Jennifer L.; Shen, Tong; Fiehn, Oliver; Gaul, David A.; Fernandez, Facundo M.; Rempfert, Kaitlin R.; Metz, Thomas O.; Peterson, Karen E.; Evans, Charles R.; Karnovsky, Alla
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Research Directions

No research directions
Co-authors
Cooperation Journals
C
Charles M. Rice
H-index: 166 · Papers: 718
B
Bernhard Ø. Palsson
H-index: 166 · Papers: 1.2K
C
C. Ronald Kahn
H-index: 164 · Papers: 635
J
Jens Nielsen
H-index: 161 · Papers: 1.5K
S
Stephen S. Rich
H-index: 160 · Papers: 1.9K
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