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Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates Dhaka, Bhavya; Zimmerli, Marc; Hanhart, Daniel; Moser, Mario B.; Guillen-Ramirez, Hugo; Mishra, Sanat; Esposito, Roberta; Polidori, Taisia; Widmer, Maro; Garcia-Perez, Raquel; Kruithof-de Julio, Marianna; Pervouchine, Dmitri; Mele, Marta; Chouvardas, Panagiotis; Johnson, Rory Share Save
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A limited set of transcriptional programs define major cell types Breschi, Alessandra; Munoz-Aguirre, Manuel; Wucher, Valentin; Davis, Carrie A.; Garrido-Martin, Diego; Djebali, Sarah; Gillis, Jesse; Pervouchine, Dmitri D.; Vlasova, Anna; Dobin, Alexander; Zaleski, Chris; Drenkow, Jorg; Danyko, Cassidy; Scavelli, Alexandra; Reverter, Ferran; Snyder, Michael P.; Gingeras, Thomas R.; Guigo, Roderic Share Save
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The effects of death and post-mortem cold ischemia on human tissue transcriptomes Ferreira, Pedro G.; Munoz-Aguirre, Manuel; Reverter, Ferran; Sa Godinho, Caio P.; Sousa, Abel; Amadoz, Alicia; Sodaei, Reza; Hidalgo, Marta R.; Pervouchine, Dmitri; Carbonell-Caballero, Jose; Nurtdinov, Ramil; Breschi, Alessandra; Amador, Raziel; Oliveira, Patricia; Cubuk, Cankut; Curado, Joao; Aguet, Francois; Oliveira, Carla; Dopazo, Joaquin; Sammeth, Michael; Ardlie, Kristin G.; Guigo, Roderic Share Save
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A benchmark for RNA-seq quantification pipelines (vol 17, 74, 2016) Teng, Mingxiang; Love, Michael I.; Davis, Carrie A.; Djebali, Sarah; Dobin, Alexander; Graveley, Brenton R.; Li, Sheng; Mason, Christopher E.; Olson, Sara; Pervouchine, Dmitri; Sloan, Cricket A.; Wei, Xintao; Zhan, Lijun; Irizarry, Rafael A. Share Save
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A benchmark for RNA-seq quantification pipelines (vol 17, 74, 2016) Teng, Mingxiang; Love, Michael I.; Davis, Carrie A.; Djebali, Sarah; Dobin, Alexander; Graveley, Brenton R.; Li, Sheng; Mason, Christopher E.; Olson, Sara; Pervouchine, Dmitri; Sloan, Cricket A.; Wei, Xintao; Zhan, Lijun; Irizarry, Rafael A. Share Save
A benchmark for RNA-seq quantification pipelines Teng, Mingxiang; Love, Michael I.; Davis, Carrie A.; Djebali, Sarah; Dobin, Alexander; Graveley, Brenton R.; Li, Sheng; Mason, Christopher E.; Olson, Sara; Pervouchine, Dmitri; Sloan, Cricket A.; Wei, Xintao; Zhan, Lijun; Irizarry, Rafael A. Share Save
Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction Frankish, Adam; Uszczynska, Barbara; Ritchie, Graham R. S.; Gonzalez, Jose M.; Pervouchine, Dmitri; Petryszak, Robert; Mudge, Jonathan M.; Fonseca, Nuno; Brazma, Alvis; Guigo, Roderic; Harrow, Jennifer Share Save
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression Pervouchine, Dmitri D.; Djebali, Sarah; Breschi, Alessandra; Davis, Carrie A.; Barja, Pablo Prieto; Dobin, Alex; Tanzer, Andrea; Lagarde, Julien; Zaleski, Chris; See, Lei-Hoon; Fastuca, Meagan; Drenkow, Jorg; Wang, Huaien; Bussotti, Giovanni; Pei, Baikang; Balasubramanian, Suganthi; Monlong, Jean; Harmanci, Arif; Gerstein, Mark; Beer, Michael A.; Notredame, Cedric; Guigo, Roderic; Gingeras, Thomas R. Share Save
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