Christopher Plott - Publications, H-index & Citations

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Christopher Plott

HudsonAlpha Institute for Biotechnology

25H-index

54Paper Count

3.5KCitation Count

Published Papers 20

Publication Date

Assembly of Silphium interspecific hybrid genomes opens the genus to phylogenomics, ecogenomics, and molecular breeding

Nature Communications

IF15.7

2026-07-09

OAAI

Renan S. Souza; Josh P. Clevenger; Jerry Jenkins; Walid Korani; Jeremy Schmutz; Jane Grimwood; Christopher Plott; Yaniv Brandvain; Kathryn Turner; Allison J. Miller; Brent S. Hulke; Louis F. Nastasi; Ebony G. Murrell; Lori H. Handley; Jenell Webber; Lori Beth Boston; Stella Woeltjen; Matthew J. Rubin; Betsy Trana; Erin Howard; Ashlyn Bazzel; Alex Harkess; David L. Van Tassel

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Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome

New Phytologist

IF8.1

2026-04-02

OAAI

Kevin A. Bird; Joanna L. Rifkin; Chloee M. McLaughlin; Avril M. Harder; Pawan Basnet; Ella Katz; Tomáš Brůna; Kerrie Barry; LoriBeth Boston; Christopher Daum; Jie Guo; Anna Lipzen; Christopher Plott; Jerry W. Jenkins; Rachel Walstead; Shanmugam Rajasekar; Jayson Talag; Katherine Frels; Kathleen Greenham; Shelby Ellison; Jane Grimwood; Jeremy Schmutz; Patrick P. Edger; J. Chris Pires; John T. Lovell; Daniel J. Kliebenstein

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A sorghum pangenome reference improves global crop trait discovery

Nature

IF48.5

2026-03-11

OAAI

Geoffrey P. Morris; Avril M. Harder; Adam L. Healey; Chloee M. McLaughlin; Joanna L. Rifkin; Clara Cruet-Burgos; Jerry W. Jenkins; Shengqiang Shu; John J. Spiekerman; Carl J. VanGessel; Erica Agnew; Alain Audebert; Kerrie Barry; Ivan Baxter; Gregory Beurier; Lori Beth Boston; Richard E. Boyles; Siobhan M. Brady; Victoria Bunting; Jacqueline M. Chaparro; Chaney Courtney; Joseph Sékou B. Dembele; Santosh Deshpande; Cyril Diatta; Nathaniel Eck; Andrea L. Eveland; Jacques M. Faye; Dave Flowers; Daniel Fonceka; Boubacar Gano; Marie de Gracia Coquerel; David Goodstein; Jane Grimwood; Matthew E. Hudson; Jana Kholova; Katherine Johnson; Kristen K. Johnson; Dorota Kawa; Mamoutou Kouressy; Stephen Kresovich; Scott Lee; Peggy G. Lemaux; Robert Lowery; Delphine Luquet; Fanna Maina; Sujan Mamidi; John K. McKay; Todd P. Michael; Taye T. Mindaye; John Mullet; Philip Ozersky; Christopher Plott; Jessica E. Prenni; Gael Pressoir; Jean-François Rami; Trevor W. Rife; Jocelyn Saxton; Bassirou Sine; Avinash Sreedasyam; Jayson Talag; Niaba Teme; Mitchell R. Tuinstra; Vincent Vadez; John P. Vogel; Rachel Walstead; Jianan Wang; Jenell Webber; Melissa Williams; Yuxing Xu; Todd C. Mockler; Jesse R. Lasky; Brian R. Rice; Jeremy Schmutz; Nadia Shakoor; John T. Lovell

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Genomic approaches to accelerate American chestnut restoration

Science

IF45.8

2026-02-12

PREAI

Jared W. Westbrook; Joanna Malukiewicz; Qian Zhang; Avinash Sreedasyam; Jerry W. Jenkins; Vasiliy Lakoba; Sara Fitzsimmons; Jamie Van Clief; Kendra Collins; Stephen Hoy; Cassie Stark; Lake Graboski; Eric Jenkins; Thomas M. Saielli; Benjamin T. Jarrett; Lucinda J. Wigfield; Lauren M. Kerwien; Ciera Wilbur; Alexander M. Sandercock; J. Hill Craddock; Susanna Keriö; Tetyana Zhebentyayeva; Shenghua Fan; Austin M. Thomas; Albert G. Abbott; C. Dana Nelson; Xiaoxia Xia; James R. McKenna; Caleb Kell; Melissa Williams; LoriBeth Boston; Christopher Plott; Florian Carle; Jack Swatt; Jack Ostroff; Steven N. Jeffers; Kathleen McKeever; Erica Smith; Thomas J. Ellis; Joseph B. James; Paul Sisco; Andrew Newhouse; Erik Carlson; William A. Powell; Frederick V. Hebard; John Scrivani; Caragh Heverly; Martin Cipollini; Brian Clark; Eric Evans; Bruce Levine; John E. Carlson; David Goodstein; Jack Orebaugh; Zamin K. Yang; Madhavi Z. Martin; Joanna Tannous; Tomás A. Rush; Nancy L. Engle; Timothy J. Tschaplinski; Jane Grimwood; Jeremy Schmutz; Jason A. Holliday; John T. Lovell

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The architecture of resilience: a genome assembly of Myrothamnus flabellifolia sheds light on desiccation tolerance and sex determination

New Phytologist

IF8.1

2025-11-02

OAAI

Rose A. Marks; John T. Lovell; Sarah B. Carey; Llewelyn Van Der Pas; Nyaradzai M. Chimukuche; Tomáš Brůna; Christopher Plott; Jenell Webber; Anna Lipzen; Juying Yan; Diane Bauer; Joanne Bentley; Jayson Talag; Chloee M. McLaughlin; Kerrie Barry; Jane Grimwood; Jerry W. Jenkins; Jeremy Schmutz; Alex Harkess; Robert VanBuren; James Leebens-Mack; Jill M. Farrant

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Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima

FRONTIERS IN GENETICS

IF2.8

2025-05-14

OAAI

DeWeese, Kelly; Molano, Gary; Calhoun, Sara; Lipzen, Anna; Jenkins, Jerry; Williams, Melissa; Plott, Christopher; Talag, Jayson; Grimwood, Jane; Jannink, Jean-Luc; Grigoriev, Igor V.; Schmutz, Jeremy; Yarish, Charles; Nuzhdin, Sergey; Lindell, Scott

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Genome resources for three modern cotton lines guide future breeding efforts

NATURE PLANTS

IF13.6

2024-05-30

OAAI

Sreedasyam, Avinash; Lovell, John T.; Mamidi, Sujan; Khanal, Sameer; Jenkins, Jerry W.; Plott, Christopher; Bryan, Kempton B.; Li, Zhigang; Shu, Shengqiang; Carlson, Joseph; Goodstein, David; De Santiago, Luis; Kirkbride, Ryan C.; Calleja, Sebastian; Campbell, Todd; Koebernick, Jenny C.; Dever, Jane K.; Scheffler, Jodi A.; Pauli, Duke; Jenkins, Johnie N.; Mccarty, Jack C.; Williams, Melissa; Boston, Loribeth; Webber, Jenell; Udall, Joshua A.; Chen, Z. Jeffrey; Bourland, Fred; Stiller, Warwick N.; Saski, Christopher A.; Grimwood, Jane; Chee, Peng W.; Jones, Don C.; Schmutz, Jeremy

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Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-01-18

OAAI

Li, Cheng; Wickell, David; Kuo, Li-Yaung; Chen, Xueqing; Nie, Bao; Liao, Xuezhu; Peng, Dan; Ji, Jiaojiao; Jenkins, Jerry; Williams, Mellissa; Shu, Shengqiang; Plott, Christopher; Barry, Kerrie; Rajasekar, Shanmugam; Grimwood, Jane; Han, Xiaoxu; Sun, Shichao; Hou, Zhuangwei; He, Weijun; Dai, Guanhua; Sun, Cheng; Schmutz, Jeremy; Leebens-Mack, James H.; Li, Fay-Wei; Wang, Li

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Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

NATURE COMMUNICATIONS

IF15.7

2024-01-17

OAAI

Bredeson, Jessen V.; Mudd, Austin B.; Medina-Ruiz, Sofia; Mitros, Therese; Smith, Owen Kabnick; Miller, Kelly E.; Lyons, Jessica B.; Batra, Sanjit S.; Park, Joseph; Berkoff, Kodiak C.; Plott, Christopher; Grimwood, Jane; Schmutz, Jeremy; Aguirre-Figueroa, Guadalupe; Khokha, Mustafa K.; Lane, Maura; Philipp, Isabelle; Laslo, Mara; Hanken, James; Kerdivel, Gwenneg; Buisine, Nicolas; Sachs, Laurent M.; Buchholz, Daniel R.; Kwon, Taejoon; Smith-Parker, Heidi; Gridi-Papp, Marcos; Ryan, Michael J.; Denton, Robert D.; Malone, John H.; Wallingford, John B.; Straight, Aaron F.; Heald, Rebecca; Hockemeyer, Dirk; Harland, Richard M.; Rokhsar, Daniel S.

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Haplotype-resolved genome assembly of Populus tremula x P. alba reveals aspen-specific megabase satellite DNA

PLANT JOURNAL

IF5.7

2023-09-07

OAAI

Zhou, Ran; Jenkins, Jerry W.; Zeng, Yibing; Shu, Shengqiang; Jang, Hosung; Harding, Scott A.; Williams, Melissa; Plott, Christopher; Barry, Kerrie W.; Koriabine, Maxim; Amirebrahimi, Mojgan; Talag, Jayson; Rajasekar, Shanmugam; Grimwood, Jane; Schmitz, Robert J.; Dawe, R. Kelly; Schmutz, Jeremy; Tsai, Chung-Jui

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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

NUCLEIC ACIDS RESEARCH

IF13.1

2023-08-01

OAAI

Sreedasyam, Avinash; Plott, Christopher; Hossain, Md Shakhawat; Lovell, John T.; Grimwood, Jane; Jenkins, Jerry W.; Daum, Christopher; Barry, Kerrie; Carlson, Joseph; Shu, Shengqiang; Phillips, Jeremy; Amirebrahimi, Mojgan; Zane, Matthew; Wang, Mei; Goodstein, David; Haas, Fabian B.; Hiss, Manuel; Perroud, Pierre-Francois; Jawdy, Sara S.; Yang, Yongil; Hu, Rongbin; Johnson, Jenifer; Kropat, Janette; Gallaher, Sean D.; Lipzen, Anna; Shakirov, Eugene, V; Weng, Xiaoyu; Torres-Jerez, Ivone; Weers, Brock; Conde, Daniel; Pappas, Marilia R.; Liu, Lifeng; Muchlinski, Andrew; Jiang, Hui; Shyu, Christine; Huang, Pu; Sebastian, Jose; Laiben, Carol; Medlin, Alyssa; Carey, Sankalpi; Carrell, Alyssa A.; Chen, Jin-Gui; Perales, Mariano; Swaminathan, Kankshita; Allona, Isabel; Grattapaglia, Dario; Cooper, Elizabeth A.; Tholl, Dorothea; Vogel, John P.; Weston, David J.; Yang, Xiaohan; Brutnell, Thomas P.; Kellogg, Elizabeth A.; Baxter, Ivan; Udvardi, Michael; Tang, Yuhong; Mockler, Todd C.; Juenger, Thomas E.; Mullet, John; Rensing, Stefan A.; Tuskan, Gerald A.; Merchant, Sabeeha S.; Stacey, Gary; Schmutz, Jeremy

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The western redcedar genome reveals low genetic diversity in a self-compatible conifer

GENOME RESEARCH

IF5.5

2022-09-15

OAAI

Shalev, Tal J.; El-Dien, Omnia Gamal; Yuen, Macaire M. S.; Shengqiang, Shu; Jackman, Shaun D.; Warren, Rene L.; Coombe, Lauren; van der Merwe, Lise; Stewart, Ada; Boston, Lori B.; Plott, Christopher; Jenkins, Jerry; He, Guifen; Yan, Juying; Yan, Mi; Guo, Jie; Breinholt, Jesse W.; Neves, Leandro G.; Grimwood, Jane; Rieseberg, Loren H.; Schmutz, Jeremy; Birol, Inanc; Kirst, Matias; Yanchuk, Alvin D.; Ritland, Carol; Russell, John H.; Bohlmann, Joerg

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Expansion of long-read genome sequencing for the molecular diagnosis of neurodevelopmental disorders and multiple congenital anomalies

GENETICS IN MEDICINE

IF6.2

2022-03-01

OAAI

Hiatt, Susan; Lawlor, James; Handley, Lori; Bonnstetter, Zachary; Jenkins, Jerry; Lovell, John; Holt, James; Finnila, Candice; Thompson, Michelle; Latner, Donald; Partridge, Christopher; Plott, Christopher; Boston, Lori Beth; Williams, Melissa; Bowling, Kevin; Grimwood, Jane; Schmutz, Jeremy; Cooper, Gregory

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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding

NATURE COMMUNICATIONS

IF15.7

2021-07-05

OAAI

Lovell, John T.; Bentley, Nolan B.; Bhattarai, Gaurab; Jenkins, Jerry W.; Sreedasyam, Avinash; Alarcon, Yanina; Bock, Clive; Boston, Lori Beth; Carlson, Joseph; Cervantes, Kimberly; Clermont, Kristen; Duke, Sara; Krom, Nick; Kubenka, Keith; Mamidi, Sujan; Mattison, Christopher P.; Monteros, Maria J.; Pisani, Cristina; Plott, Christopher; Rajasekar, Shanmugam; Rhein, Hormat Shadgou; Rohla, Charles; Song, Mingzhou; Hilaire, Rolston St.; Shu, Shengqiang; Wells, Lenny; Webber, Jenell; Heerema, Richard J.; Klein, Patricia E.; Conner, Patrick; Wang, Xinwang; Grauke, L. J.; Grimwood, Jane; Schmutz, Jeremy; Randall, Jennifer J.

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Long-read genome sequencing for the molecular diagnosis of neurodevelopmental disorders

HUMAN GENETICS AND GENOMICS ADVANCES

IF3.6

2021-04-01

OAAI

Hiatt, Susan M.; Lawlor, James M. J.; Handley, Lori H.; Ramaker, Ryne C.; Rogers, Brianne B.; Partridge, E. Christopher; Boston, Lori Beth; Williams, Melissa; Plott, Christopher B.; Jenkins, Jerry; Gray, David E.; Holt, James M.; Bowling, Kevin M.; Bebin, E. Martina; Grimwood, Jane; Schmutz, Jeremy; Cooper, Gregory M.

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Long-read sequence assembly: a technical evaluation in barley

PLANT CELL

IF11.6

2021-03-12

212

OAAI

Mascher, Martin; Wicker, Thomas; Jenkins, Jerry; Plott, Christopher; Lux, Thomas; Koh, Chu Shin; Ens, Jennifer; Gundlach, Heidrun; Boston, Lori B.; Tulpova, Zuzana; Holden, Samuel; Hernandez-Pinzon, Inmaculada; Scholz, Uwe; Mayer, Klaus F. X.; Spannagl, Manuel; Pozniak, Curtis J.; Sharpe, Andrew G.; Simkova, Hana; Moscou, Matthew J.; Grimwood, Jane; Schmutz, Jeremy; Stein, Nils

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Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

NATURE GENETICS

IF31.8

2020-04-20

283

OAAI

Chen, Z. Jeffrey; Sreedasyam, Avinash; Ando, Atsumi; Song, Qingxin; De Santiago, Luis M.; Hulse-Kemp, Amanda M.; Ding, Mingquan; Ye, Wenxue; Kirkbride, Ryan C.; Jenkins, Jerry; Plott, Christopher; Lovell, John; Lin, Yu-Ming; Vaughn, Robert; Liu, Bo; Simpson, Sheron; Scheffler, Brian E.; Wen, Li; Saski, Christopher A.; Grover, Corrinne E.; Hu, Guanjing; Conover, Justin L.; Carlson, Joseph W.; Shu, Shengqiang; Boston, Lori B.; Williams, Melissa; Peterson, Daniel G.; McGee, Keith; Jones, Don C.; Wendel, Jonathan F.; Stelly, David M.; Grimwood, Jane; Schmutz, Jeremy

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Construction and comparison of three reference-quality genome assemblies for soybean

PLANT JOURNAL

IF5.7

2019-10-28

139

OAAI

Valliyodan, Babu; Cannon, Steven B.; Bayer, Philipp E.; Shu, Shengqiang; Brown, Anne, V; Ren, Longhui; Jenkins, Jerry; Chung, Claire Y-L; Chan, Ting-Fung; Daum, Christopher G.; Plott, Christopher; Hastie, Alex; Baruch, Kobi; Barry, Kerrie W.; Huang, Wei; Patil, Gunvant; Varshney, Rajeev K.; Hu, Haifei; Batley, Jacqueline; Yuan, Yuxuan; Song, Qijian; Stupar, Robert M.; Goodstein, David M.; Stacey, Gary; Lam, Hon-Ming; Jackson, Scott A.; Schmutz, Jeremy; Grimwood, Jane; Edwards, David; Nguyen, Henry T.

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The genomic landscape of molecular responses to natural drought stress in Panicum hallii

NATURE COMMUNICATIONS

IF15.7

2018-12-06

OAAI

Love, John T.; Jenkins, Jerry; Lowry, David B.; Mamidi, Sujan; Sreedasyam, Avinash; Weng, Xiaoyu; Barry, Kerrie; Bonnette, Jason; Campitelli, Brandon; Daum, Chris; Gordon, Sean P.; Gould, Billie A.; Khasanova, Albina; Lipzen, Anna; MacQueen, Alice; Palacio-Mejia, Juan Diego; Plott, Christopher; Shakirov, Eugene, V; Shu, Shengqiang; Yoshinaga, Yuko; Zane, Matt; Kudrna, Dave; Talag, Jason D.; Rokhsar, Daniel; Grimwood, Jane; Schmutz, Jeremy; Juenger, Thomas E.

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Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass

GENOME RESEARCH

IF5.5

2016-03-07

OAAI

Lovell, John T.; Schwartz, Scott; Lowry, David B.; Shakirov, Eugene V.; Bonnette, Jason E.; Weng, Xiaoyu; Wang, Mei; Johnson, Jenifer; Sreedasyam, Avinash; Plott, Christopher; Jenkins, Jerry; Schmutz, Jeremy; Juenger, Thomas E.

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Research Directions