Abdullah Ozer - Publications, H-index & Citations

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Abdullah Ozer

cornell university

15H-index

43Paper Count

1.4KCitation Count

Published Papers 23

Publication Date

Robust regulatory interplay of enhancers, facilitators, and promoters in a native chromatin context

Cell

IF42.5

2026-07-17

PREAI

Zhou Zhou; Yang Cheng; Jaret Lieberth; Junke Zhang; Yiyang Jin; Albert Li; Haiyuan Yu; Abdullah Ozer; John T. Lis

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High-resolution reconstruction of cell-type-specific transcriptional regulatory processes from bulk sequencing samples

Nature Biotechnology

IF41.7

2026-07-13

PREAI

Li Yao; Sagar R. Shah; Abdullah Ozer; Yutong Zhu; Xiuqi Pan; Tianyu Xia; Junke Zhang; Alden King-Yung Leung; Meihan Wei; John T. Lis; Haiyuan Yu

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Dual promoter–enhancer activities reflect a unified regulatory logic

Nature Communications

IF15.7

2026-01-30

OAAI

Mauricio I. Paramo; Alden King-Yung Leung; Sagar R. Shah; Junke Zhang; Nathaniel D. Tippens; Jin Liang; Li Yao; Yiyang Jin; Xiuqi Pan; Abdullah Ozer; John T. Lis; Haiyuan Yu

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Comprehensive evaluation of diverse massively parallel reporter assays to functionally characterize human enhancers genome-wide

Genome Biology

IF9.4

2025-11-04

OAAI

Junke Zhang; Alden King-Yung Leung; Yutong Zhu; Li Yao; Avery Willis; Xiuqi Pan; Abdullah Ozer; Zhou Zhou; Keith Siklenka; Alejandro Barrera; Jin Liang; Nathaniel D. Tippens; Timothy E. Reddy; John T. Lis; Haiyuan Yu

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Cell-type-specific RNA polymerase II activity maps in intact tissues provide a gateway to mammalian gene regulatory mechanisms in vivo

Developmental Cell

IF8.7

2025-10-20

OAAI

Gopal Chovatiya; Sean Y. Huang; Alex B. Wang; Philip Versluis; Chris K. Bai; Michael DeBerardine; Yu-Ching Liao; Judhajeet Ray; Abdullah Ozer; John T. Lis; Tudorita Tumbar

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A comparison of experimental assays and analytical methods for genome-wide identification of active enhancers

NATURE BIOTECHNOLOGY

IF41.7

2022-02-17

OAAI

Yao, Li; Liang, Jin; Ozer, Abdullah; Leung, Alden King-Yung; Lis, John T.; Yu, Haiyuan

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Transcription imparts architecture, function and logic to enhancer units

NATURE GENETICS

IF31.8

2020-09-21

OAAI

Tippens, Nathaniel D.; Liang, Jin; Leung, Alden King-Yung; Wierbowski, Shayne D.; Ozer, Abdullah; Booth, James G.; Lis, John T.; Yu, Haiyuan

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RNA aptamer capture of macromolecular complexes for mass spectrometry analysis

NUCLEIC ACIDS RESEARCH

IF13.1

2020-07-01

OAAI

Ray, Judhajeet; Kruse, Angela; Ozer, Abdullah; Kajitani, Takuya; Johnson, Richard; MacCoss, Michael; Heck, Michelle; Lis, John T.

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Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-09-10

OAAI

Ray, Judhajeet; Munn, Paul R.; Vihervaara, Anniina; Lewis, James J.; Ozer, Abdullah; Danko, Charles G.; Lis, John T.

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High-Resolution Locus-Specific Mapping of Chromatin Contacts using Two-Photon Photoactivated DNA Cross-Linking

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Kushner, Max; Wang, Juan; Ozer, Abdullah; Ray, Judhajeet; Lisa, John; Zipfel, Warren

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Highly Multiplexed RNA Aptamer Selection using a Microplate-based Microcolumn Device

SCIENTIFIC REPORTS

IF3.9

2016-07-19

OAAI

Reinholt, Sarah J.; Ozer, Abdullah; Lis, John T.; Craighead, Harold G.

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Quantitative assessment of RNA-protein interactions with high-throughput sequencing-RNA affinity profiling

NATURE PROTOCOLS

IF16

2015-07-16

OAAI

Ozer, Abdullah; Tome, Jacob M.; Friedman, Robin C.; Gheba, Dan; Schroth, Gary P.; Lis, John T.

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Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling

NATURE METHODS

IF32.1

2014-05-08

126

OAAI

Tome, Jacob M.; Ozer, Abdullah; Pagano, John M.; Gheba, Dan; Schroth, Gary P.; Lis, John T.

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High-throughput binding characterization of RNA aptamer selections using a microplate-based multiplex microcolumn device

ANALYTICAL AND BIOANALYTICAL CHEMISTRY

IF3.8

2014-02-20

OAAI

Szeto, Kylan; Reinholt, Sarah J.; Duarte, Fabiana M.; Pagano, John M.; Ozer, Abdullah; Yao, Li; Lis, John T.; Craighead, Harold G.

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Super-Resolution Imaging of GFP Expressing Cells using Dye Labeled GFP Aptamers

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Wang, Juan; Singh, Avtar; Ozer, Abdullah; Lis, John; Zipfel, Warren

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New Technologies Provide Quantum Changes in the Scale, Speed, and Success of SELEX Methods and Aptamer Characterization

MOLECULAR THERAPY-NUCLEIC ACIDS

IF0

2014-01-01

170

OAAI

Ozer, Abdullah; Pagano, John M.; Lis, John T.

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Density-dependent cooperative non-specific binding in solid-phase SELEX affinity selection

NUCLEIC ACIDS RESEARCH

IF13.1

2013-05-21

OAAI

Ozer, Abdullah; White, Brian S.; Lis, John T.; Shalloway, David

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Multiplexed Microcolumn-Based Process for Efficient Selection of RNA Aptamers

ANALYTICAL CHEMISTRY

IF6.7

2013-02-27

OAAI

Latulippe, David R.; Szeto, Kylan; Ozer, Abdullah; Duarte, Fabiana M.; Kelly, Christopher V.; Pagano, John M.; White, Brian S.; Shalloway, David; Lis, John T.; Craighead, Harold G.

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Optimizing SELEX with high-throughput sequencing

CANCER RESEARCH

IF16.6

2012-04-01

PREAI

White, Brian S.; Ozer, Abdullah; Lis, John T.; Shalloway, David

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RNA aptamers that functionally interact with green fluorescent protein and its derivatives

NUCLEIC ACIDS RESEARCH

IF13.1

2011-12-20

OAAI

Shui, Bo; Ozer, Abdullah; Zipfel, Warren; Sahu, Nevedita; Singh, Avtar; Lis, John T.; Shi, Hua; Kotlikoff, Michael I.

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Research Directions