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D

David F. Savage

University of California

44H-index
149Paper Count
7.0KCitation Count
Published Papers 48
Publication Date
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Property guidance for protein sequence generative models with ProteinGuide
errNature Biotechnology
IF41.7
err2026-07-29
err0
PREAI
errJunhao Xiong; Ishan Gaur; Maria Lukarska; Hunter Nisonoff; Luke M. Oltrogge; David F. Savage; Jennifer Listgarten
errShare
errSave
Mapping cis-regulatory mutations at scale in sorghum enables modulation of gene expression
errNature Biotechnology
IF41.7
err2026-03-27
err0
errOAAI
errEvan D. Groover; David Ding; Flora Z. Wang; Gonzalo Benegas; Joseph Rivera; Shahar Schwartz; Stephen Chen; Michael F. Moubarak; Viktoriya Georgieva; Peggy G. Lemaux; Brian J. Staskawicz; Krishna K. Niyogi; Yun S. Song; David F. Savage
errShare
errSave
Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements
errGENOME RESEARCH
IF5.5
err2024-10-15
err1
errOAAI
errValentin-Alvarado, Luis E.; Shi, Ling-Dong; Appler, Kathryn E.; Crits-Christoph, Alexander; De Anda, Valerie; Adler, Benjamin A.; Cui, Michael L.; Ly, Lynn; Leao, Pedro; Roberts, Richard J.; Sachdeva, Rohan; Baker, Brett J.; Savage, David F.; Banfield, Jillian F.
errShare
errSave
Functional plasticity of HCO3-uptake and CO2 fixation in Cupriavidus necator H16
errBIORESOURCE TECHNOLOGY
IF9
err2024-10-01
err2
errOAAI
errPanich, Justin; Toppari, Emili; Tejedor-Sanz, Sara; Fong, Bonnie; Dugan, Eli; Chen, Yan; Petzold, Christopher J.; Zhao, Zhiying; Yoshikuni, Yasuo; Savage, David F.; Singer, Steven W.
errShare
errSave
Ten Years of the Synthetic Biology Summer Course at Cold Spring Harbor Laboratory
errACS SYNTHETIC BIOLOGY
IF3.9
err2024-09-20
err0
errOAAI
errHaynes, Karmella A.; Andrews, Lauren B.; Beisel, Chase L.; Chappell, James; Samaniego, Christian E. Cuba; Dueber, John E.; Dunlop, Mary J.; Franco, Elisa; Lucks, Julius B.; Noireaux, Vincent; Savage, David F.; Silver, Pamela A.; Smanski, Michael; Young, Eric
errShare
errSave
Conserved and repetitive motifs in an intrinsically disordered protein drive a-carboxysome assembly
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2024-08-01
err3
errOAAI
errTurnsek, Julia B.; Oltrogge, Luke M.; Savage, David F.
errShare
errSave
Asgard archaea modulate potential methanogenesis substrates in wetland soil
errNATURE COMMUNICATIONS
IF15.7
err2024-07-31
err0
errOAAI
errValentin-Alvarado, Luis E.; Appler, Kathryn E.; De Anda, Valerie; Schoelmerich, Marie C.; West-Roberts, Jacob; Kivenson, Veronika; Crits-Christoph, Alexander; Ly, Lynn; Sachdeva, Rohan; Greening, Chris; Savage, David F.; Baker, Brett J.; Banfield, Jillian F.
errShare
errSave
A Translation-Independent Directed Evolution Strategy to Engineer Aminoacyl-tRNA Synthetases
errACS CENTRAL SCIENCE
IF10.4
err2024-05-20
err5
errOAAI
errSoni, Chintan; Prywes, Noam; Hall, Matthew; Nair, Malavika A.; Savage, David F.; Schepartz, Alanna; Chatterjee, Abhishek
errShare
errSave
Protein design using structure-based residue preferences
errNATURE COMMUNICATIONS
IF15.7
err2024-02-22
err7
errOAAI
errDing, David; Shaw, Ada Y.; Sinai, Sam; Rollins, Nathan; Prywes, Noam; Savage, David F.; Laub, Michael T.; Marks, Debora S.
errShare
errSave
Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism
errMICROBIOME
IF12.7
err2024-01-26
err3
errOAAI
errValentin-Alvarado, Luis E.; Fakra, Sirine C.; Probst, Alexander J.; Giska, Jonathan R.; Jaffe, Alexander L.; Oltrogge, Luke M.; West-Roberts, Jacob; Rowland, Joel; Manga, Michael; Savage, David F.; Greening, Chris; Baker, Brett J.; Banfield, Jillian F.
errShare
errSave
CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-10-27
err9
errOAAI
errAdler, Benjamin A.; Trinidad, Marena, I; Bellieny-Rabelo, Daniel; Zhang, Elaine; Karp, Hannah M.; Skopintsev, Petr; Thornton, Brittney W.; Weissman, Rachel F.; Yoon, Peter H.; Chen, Linxing; Hessler, Tomas; Eggers, Amy R.; Colognori, David; Boger, Ron; Doherty, Erin E.; Tsuchida, Connor A.; Tran, Ryan, V; Hofman, Laura; Shi, Honglue; Wasko, Kevin M.; Zhou, Zehan; Xia, Chenglong; Al-Shimary, Muntathar J.; Patel, Jaymin R.; Thomas, Vienna C. J. X.; Pattali, Rithu; Kan, Matthew J.; Vardapetyan, Anna; Yang, Alana; Lahiri, Arushi; Maxwell, Michaela F.; Murdock, Andrew G.; Ramit, Glenn C.; Henderson, Hope R.; Calvert, Roland W.; Bamert, Rebecca S.; Knott, Gavin J.; Lapinaite, Audrone; Pausch, Patrick; Cofsky, Joshua C.; Sontheimer, Erik J.; Wiedenheft, Blake; Fineran, Peter C.; Brouns, Stan J. J.; Sashital, Dipali G.; Thomas, Brian C.; Brown, Christopher T.; Goltsman, Daniela S. A.; Barrangou, Rodolphe; Siksnys, Virginius; Banfield, Jillian F.; Savage, David F.; Doudna, Jennifer A.
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errSave
Identification of a carbonic anhydrase-Rubisco complex within the alpha- carboxysome
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-10-20
err13
errOAAI
errBlikstad, Cecilia; Dugan, Eli J.; Laughlin, Thomas G.; Turnsek, Julia B.; Liu, Mira D.; Shoemaker, Sophie R.; Vogiatzi, Nikoleta; Remis, Jonathan P.; Savage, David F.
errShare
errSave
Genome editing in the mouse brain with minimally immunogenic Cas9 RNPs
errMOLECULAR THERAPY
IF12
err2023-08-01
err8
errOAAI
errStahl, Elizabeth C.; Sabo, Jennifer K.; Kang, Min Hyung; Allen, Ryan; Applegate, Elizabeth; Kim, Shin Eui; Kwon, Yoonjin; Seth, Anmol; Lemus, Nicholas; Salinas-Rios, Viviana; Soczek, Katarzyna M.; Trinidad, Marena; Vo, Linda T.; Jeans, Chris; Wozniak, Anna; Morris, Timothy; Kimberlin, Athen; Foti, Thomas; Savage, David F.; Doudna, Jennifer A.
errShare
errSave
Rubisco Function, Evolution, and Engineering
errANNUAL REVIEW OF BIOCHEMISTRY
IF20.5
err2023-06-20
err31
errOAAI
errPrywes, Noam; Phillips, Naiya R.; Tuck, Owen T.; Valentin-Alvarado, Luis E.; Savage, David F.
errShare
errSave
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO2 through geologic time should be reevaluated
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-05-08
err4
errOAAI
errWang, Renee Z.; Nichols, Robert J.; Liu, Albert K.; Flamholz, Avi I.; Artier, Juliana; Banda, Doug M.; Savage, David F.; Eiler, John M.; Shih, Patrick M.; Fischer, Woodward W.
errShare
errSave
Rubisco forms a lattice inside alpha-carboxysomes
errNATURE COMMUNICATIONS
IF15.7
err2022-08-18
err27
errOAAI
errMetskas, Lauren Ann; Ortega, Davi; Oltrogge, Luke M.; Blikstad, Cecilia; Lovejoy, Derik R.; Laughlin, Thomas G.; Savage, David F.; Jensen, Grant J.
errShare
errSave
Rapid detection of SARS-CoV-2 RNA in saliva via Cas13
errNATURE BIOMEDICAL ENGINEERING
IF26.6
err2022-08-11
err77
errOAAI
errChandrasekaran, Sita S.; Agrawal, Shreeya; Fanton, Alison; Jangid, Aditya R.; Charrez, Berenice; Escajeda, Arturo M.; Son, Sungmin; Mcintosh, Roger; Tran, Huyen; Bhuiya, Abdul; Derby, Maria Diaz de Leon; Switz, Neil A.; Armstrong, Maxim; Harris, Andrew R.; Prywes, Noam; Lukarska, Maria; Biering, Scott B.; Smock, Dylan C. J.; Mok, Amanda; Knott, Gavin J.; Dang, Qi; Van Dis, Erik; Dugan, Eli; Kim, Shin; Liu, Tina Y.; Consortium, Igi Testing; Moehle, Erica A.; Kogut, Katherine; Eskenazi, Brenda; Harris, Eva; Stanley, Sarah A.; Lareau, Liana F.; Tan, Ming X.; Fletcher, Daniel A.; Doudna, Jennifer A.; Savage, David F.; Hsu, Patrick D.
errShare
errSave
The encapsulin from Thermotoga maritima is a flavoprotein with a symmetry matched ferritin-like cargo protein
errSCIENTIFIC REPORTS
IF3.9
err2021-11-23
err21
errOAAI
errLaFrance, Benjamin J.; Cassidy-Amstutz, Caleb; Nichols, Robert J.; Oltrogge, Luke M.; Nogales, Eva; Savage, David F.
errShare
errSave
Comprehensive deletion landscape of CRISPR-Cas9 identifies minimal RNA-guided DNA-binding modules
errNATURE COMMUNICATIONS
IF15.7
err2021-09-27
err30
errOAAI
errShams, Arik; Higgins, Sean A.; Fellmann, Christof; Laughlin, Thomas G.; Oakes, Benjamin L.; Lew, Rachel; Kim, Shin; Lukarska, Maria; Arnold, Madeline; Staahl, Brett T.; Doudna, Jennifer A.; Savage, David F.
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errSave
New discoveries expand possibilities for carboxysome engineering
errCURRENT OPINION IN MICROBIOLOGY
IF7.5
err2021-06-01
err36
errOAAI
errBorden, Julia S.; Savage, David F.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
J
Jillian F. Banfield
H-index: 154 · Papers: 935
J
Jennifer A. Doudna
H-index: 149 · Papers: 672
D
David R. Liu
H-index: 124 · Papers: 378
P
Pamela A. Silver
H-index: 116 · Papers: 523
B
Brenda Eskenazi
H-index: 107 · Papers: 689
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