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Xiaoyong Pan

Ministry of Education of China

40H-index
309Paper Count
6.5KCitation Count
Published Papers 77
Publication Date
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Structure-alignment-driven cross-graph modeling for functional RNA design
errNature Computational Science
IF18.3
err2026-07-30
err0
PREAI
errShengfan Wang; Jun Wang; Xiaojian Liu; Weimin Zhu; Jiaqi Huang; Yiming Xue; Junchi Yan; Hong-Bin Shen; Jie Song; Xiaoyong Pan
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Reconstructing cell-cell interaction network in single-cell spatial transcriptomics via directed heterogeneous graph autoencoder
errBioinformatics
IF5.4
err2026-04-17
err0
errOAAI
errJin-Xian Hu; Xiaoyong Pan; Yuan Ye; Hong-Bin Shen; null
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errSave
MAESD: A Unified Multi-Agent Evolutionary Framework for Protein Sequence Design
errJournal of Chemical Information and Modeling
IF5.3
err2026-03-13
err0
PREAI
errZe Song; Hailong Yang; Zhaohong Deng; Xiaoyong Pan; Hongbin Shen; Shudong Hu; Yanqi Zhong
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SMENET: A Multi-View Semantic Model for Multi-Level Enzyme Function Prediction
errIEEE Transactions on Computational Biology and Bioinformatics
IF0
err2025-12-15
err0
PREAI
errHanwen Zhou; Wei Zhang; Zhaohong Deng; Guanjin Wang; Zhisheng Wei; Lei Wang; Xiaoyong Pan; Hong-Bin Shen; Dong-Jun Yu; Jing Wu
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Simultaneously infer cell pseudotime, velocity field, and gene interaction from multi-branch scRNA-seq data with scPN
errNAR GENOMICS AND BIOINFORMATICS
IF2.8
err2025-12-01
err0
PREAI
errZhou, Zhen; Li, Jiachen; Xin, Hongyi; Pan, Xiaoyong; Shen, Hong-Bin
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errSave
DMMAFS: Protein Function Prediction Based on Multi-Modal Multi-Attention Fusion Features
errIEEE Transactions on Computational Biology and Bioinformatics
IF0
err2025-11-01
err0
PREAI
errHe, Liangwen; Deng, Zhaohong; Hu, Fuping; Wang, Zhongyu; Zuo, Yun; Zhu, Lin; Chen, Haoran; Pan, Xiaoyong; Wei, Zhisheng; Wang, Lei; Shen, Hong-Bin; Yu, Dong-Jun; Wu, Jing
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A comprehensive proteome structural analysis suggests undiscovered functional domains in ocean archaea
errProtein Science
IF5.2
err2025-10-23
err0
PREAI
errYing Zhang; Yuan Liu; Peng Zhou; Xiaoyong Pan; James J. Chou; Hong-Bin Shen
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errSave
Modeling Enzyme Temperature Stability from Sequence Segment Perspective
errJournal of Chemical Information and Modeling
IF5.3
err2025-10-01
err0
PREAI
errZiqi Zhang; Shiheng Chen; Runze Yang; Zhisheng Wei; Wei Zhang; Lei Wang; Zhanzhi Liu; Fengshan Zhang; Jing Wu; Xiaoyong Pan; Hongbin Shen; Longbing Cao; Zhaohong Deng
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errSave
Base-resolution binding profile prediction of proteins on RNAs with deep learning
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-08-12
err0
errOAAI
errLiu, Xiaojian; Zhu, Weimin; Ding, Xiaohan; Fang, Yi; Wang, Shengfan; Zhu, Lin; Shen, Hong-Bin; Pan, Xiaoyong
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errSave
ASCE-PPIS: a protein-protein interaction sites predictor based on equivariant graph neural network with fusion of structure-aware pooling and graph collapse
errBIOINFORMATICS
IF5.4
err2025-08-01
err0
errOAAI
errShen, Guanghao; Zhang, Ziqi; Deng, Zhaohong; Pan, Xiaoyong; Shen, Hong-Bin; Yu, Dong-Jun; Hu, Shudong; Ge, Yuxi
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errSave
RBPsuite 2.0: an updated RNA-protein binding site prediction suite with high coverage on species and proteins based on deep learning
errBMC BIOLOGY
IF4.5
err2025-03-11
err1
errOAAI
errPan, Xiaoyong; Fang, Yi; Liu, Xiaojian; Guo, Xiaoyu; Shen, Hong-Bin
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errSave
Quantum Wells in Magnesium-Manganese Bimetallic Antiperovskites for High Luminescence
errACS APPLIED MATERIALS & INTERFACES
IF8.2
err2025-03-10
err0
PREAI
errCai, YY; Yan, SY; Lin, YJ; Lin, TT; Qiu, LZ; Pan, XY; Wang, WZ
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errSave
OnmiMHC: a machine learning solution for UCEC tumor vaccine development through enhanced peptide-MHC binding prediction
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2025-02-28
err0
errOAAI
errJian, Fangfang; Cai, Haihua; Chen, Qushuo; Pan, Xiaoyong; Feng, Weiwei; Yuan, Ye
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errSave
MVGNCDA: Identifying Potential circRNA-Disease Associations Based on Multi-view Graph Convolutional Networks and Network Embeddings
errINTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES
IF3.9
err2025-02-17
err0
PREAI
errSun, Guicong; Zheng, Mengxin; Fan, Yongxian; Pan, Xiaoyong
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Evaluation of Spray Drift from an Electric Boom Sprayer: Impact of Boom Height and Nozzle Type
errAGRONOMY-BASEL
IF3.4
err2025-01-10
err0
errOAAI
errPan, Xiaoyong; Yang, Shuo; Gao, Yuanyuan; Wang, Zhichong; Zhai, Changyuan; Qiu, Wei
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GexMolGen: cross-modal generation of hit-like molecules via large language model encoding of gene expression signatures
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2024-10-27
err0
errOAAI
errCheng, Jiabei; Pan, Xiaoyong; Fang, Yi; Yang, Kaiyuan; Xue, Yiming; Yan, Qingran; Yuan, Ye
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errSave
Optimization of a Boom Height Ultrasonic Detecting Model for the Whole Growth Cycle of Wheat: Affected by the Oscillation of the Three-Section Boom of the Sprayer
errAGRICULTURE-BASEL
IF3.6
err2024-10-01
err1
errOAAI
errWu, Jianguo; Yang, Shuo; Gao, Yuanyuan; Pan, Xiaoyong; Zou, Wei; Wei, Yibo; Zhai, Changyuan; Chen, Liping
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Applications of artificial intelligence to lipid nanoparticle delivery
errPARTICUOLOGY
IF4.3
err2024-07-01
err5
errOAAI
errYuan, Ye; Wu, Yuqi; Cheng, Jiabei; Yang, Kaiyuan; Xia, Yilin; Wu, Hongguang; Pan, Xiaoyong
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errSave
A comprehensive survey on protein-ligand binding site prediction
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2024-06-01
err7
PREAI
errXia, Ying; Pan, Xiaoyong; Shen, Hong -Bin
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errSave
Decoding protein binding landscape on circular RNAs with base-resolution transformer models
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2024-03-01
err2
errOAAI
errWu, Hehe; Liu, Xiaojian; Fang, Yi; Yang, Yang; Huang, Yan; Pan, Xiaoyong; Shen, Hong-Bin
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Research Directions

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Co-authors
Cooperation Journals
黄
黄威 (Wei Huang)
H-index: 217 · Papers: 5.9K
B
Ben Zhong Tang
H-index: 212 · Papers: 4.2K
Y
Yanli Zhao
H-index: 137 · Papers: 964
张勇 cover
张勇 (Yong Zhang)
H-index: 125 · Papers: 2.2K
L
Lars Juhl Jensen
H-index: 104 · Papers: 534
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