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Graph databases in systems biology: a systematic review Mazein, Ilya; Rougny, Adrien; Mazein, Alexander; Henkel, Ron; Guetebier, Lea; Michaelis, Lea; Ostaszewski, Marek; Schneider, Reinhard; Satagopam, Venkata; Jensen, Lars Juhl; Waltemath, Dagmar; Wodke, Judith A. H.; Balaur, Irina Share Save
The STRING database in 2025: protein networks with directionality of regulation Szklarczyk, Damian; Nastou, Katerina; Koutrouli, Mikaela; Kirsch, Rebecca; Mehryary, Farrokh; Hachilif, Radja; Hu, Dewei; Peluso, Matteo E.; Huang, Qingyao; Fang, Tao; Doncheva, Nadezhda T.; Pyysalo, Sampo; Bork, Peer; Jensen, Lars J.; von Mering, Christian Share Save
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Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseases Thiele, Maja; Villesen, Ida Falk; Niu, Lili; Johansen, Stine; Sulek, Karolina; Nishijima, Suguru; Van Espen, Lore; Keller, Marisa; Israelsen, Mads; Suvitaival, Tommi; de Zawadzki, Andressa; Juel, Helene Baek; Brol, Maximilian Joseph; Stinson, Sara Elizabeth; Huang, Yun; Silva, Maria Camilla Alvarez; Kuhn, Michael; Anastasiadou, Ema; Leeming, Diana Julie; Karsdal, Morten; Matthijnssens, Jelle; Arumugam, Manimozhiyan; Dalgaard, Louise Torp; Legido-Quigley, Cristina; Mann, Matthias; Trebicka, Jonel; Bork, Peer; Jensen, Lars Juhl; Hansen, Torben; Krag, Aleksander Share Save
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Overview of the Knowledge Management Center for Illuminating the Druggable Genome Oprea, Tudor I.; Bologa, Cristian; Holmes, Jayme; Mathias, Stephen; Metzger, Vincent T.; Waller, Anna; Yang, Jeremy J.; Leach, Andrew R.; Jensen, Lars Juhl; Kelleher, Keith J.; Sheils, Timothy K.; Mathe, Ewy; Avram, Sorin; Edwards, Jeremy S. Share Save
A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates Rebak, Alexandra S.; Hendriks, Ivo A.; Elsborg, Jonas D.; Buch-Larsen, Sara C.; Nielsen, Claus H.; Terslev, Lene; Kirsch, Rebecca; Damgaard, Dres; Doncheva, Nadezhda T.; Lennartsson, Caroline; Rykaer, Martin; Jensen, Lars J.; Christophorou, Maria A.; Nielsen, Michael L. Share Save
Pancreatic cancer symptom trajectories from Danish registry data and free text in electronic health records Hjaltelin, Jessica Xin; Novitski, Sif Ingibergsdottir; Jorgensen, Isabella Friis; Siggaard, Troels; Vulpius, Siri Amalie; Westergaard, David; Johansen, Julia Sidenius; Chen, Inna M.; Juhl Jensen, Lars; Brunak, Soren Share Save
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Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration Kokoli, Maria; Karatzas, Evangelos; Baltoumas, Fotis A.; Schneider, Reinhard; Pafilis, Evangelos; Paragkamian, Savvas; Doncheva, Nadezhda T.; Jensen, Lars Juhl; Pavlopoulos, Georgios A. Share Save
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Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis Yarani, Reza; Palasca, Oana; Doncheva, Nadezhda T.; Anthon, Christian; Pilecki, Bartosz; Svane, Cecilie A. S.; Mirza, Aashiq H.; Litman, Thomas; Holmskov, Uffe; Bang-Berthelsen, Claus H.; Vilien, Mogens; Jensen, Lars J.; Gorodkin, Jan; Pociot, Flemming Share Save
Pharos 2023: an integrated resource for the understudied human proteome Kelleher, Keith J.; Sheils, Timothy K.; Mathias, Stephen L.; Yang, Jeremy J.; Metzger, Vincent T.; Siramshetty, Vishal B.; Nguyen, Dac-Trung; Jensen, Lars Juhl; Vidovic, Dusica; Schurer, Stephan C.; Holmes, Jayme; Sharma, Karlie R.; Pillai, Ajay; Bologa, Cristian G.; Edwards, Jeremy S.; Mathe, Ewy A.; Oprea, Tudor, I Share Save
eggNOG 6.0: enabling comparative genomics across 12 535 organisms Hernandez-Plaza, Ana; Szklarczyk, Damian; Botas, Jorge; Cantalapiedra, Carlos P.; Giner-Lamia, Joaquin; Mende, Daniel R.; Kirsch, Rebecca; Rattei, Thomas; Letunic, Ivica; Jensen, Lars J.; Bork, Peer; von Mering, Christian; Huerta-Cepas, Jaime Share Save
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