M. Grace Gordon - Publications, H-index & Citations

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M. Grace Gordon

Genentech

12H-index

23Paper Count

1.8KCitation Count

Published Papers 8

Publication Date

Decoding sequence determinants of gene expression in diverse cellular and disease states

Nature Methods

IF32.1

2026-05-25

PREAI

Avantika Lal; Alexander Karollus; Laura Gunsalus; David Garfield; Surag Nair; Alex M. Tseng; M. Grace Gordon; John Blischak; Bryce Van De Geijn; Tushar Bhangale; Jenna L. Collier; Nathaniel Diamant; Tommaso Biancalani; Hector Corrada Bravo; Gabriele Scalia; Gokcen Eraslan

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Coordinated, multicellular patterns of transcriptional variation that stratify patient cohorts are revealed by tensor decomposition

NATURE BIOTECHNOLOGY

IF41.7

2024-09-23

PREAI

Mitchel, Jonathan; Gordon, M. Grace; Perez, Richard K.; Biederstedt, Evan; Bueno, Raymund; Ye, Chun Jimmie; Kharchenko, Peter V.

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SURGE: uncovering context-specific genetic-regulation of gene expression from single-cell RNA sequencing using latent-factor models

GENOME BIOLOGY

IF9.4

2024-01-22

OAAI

Strober, Benjamin J.; Tayeb, Karl; Popp, Joshua; Qi, Guanghao; Gordon, M. Grace; Perez, Richard; Ye, Chun Jimmie; Battle, Alexis

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Single-cell RNA-sequencing of peripheral blood mononuclear cells reveals widespread, context-specific gene expression regulation upon pathogenic exposure

NATURE COMMUNICATIONS

IF15.7

2022-06-07

OAAI

Oelen, Roy; de Vries, Dylan H.; Brugge, Harm; Gordon, M. Grace; Vochteloo, Martijn; Ye, Chun J.; Westra, Harm-Jan; Franke, Lude; van der Wijst, Monique G. P.

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lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements (vol 15, 2387, 2020)

NATURE PROTOCOLS

IF16

2020-10-30

OAAI

Gordon, M. Grace; Inoue, Fumitaka; Martin, Beth; Schubach, Max; Agarwal, Vikram; Whalen, Sean; Feng, Shiyun; Zhao, Jingjing; Ashuach, Tal; Ziffra, Ryan; Kreimer, Anat; Georgakopoulos-Soares, Ilias; Yosef, Nir; Ye, Chun Jimmie; Pollard, Katherine S.; Shendure, Jay; Kircher, Martin; Ahituv, Nadav

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Robust Sequence Determinants of α-Synuclein Toxicity in Yeast Implicate Membrane Binding

ACS CHEMICAL BIOLOGY

IF3.8

2020-07-27

OAAI

Newberry, Robert W.; Arhar, Taylor; Costello, Jean; Hartoularos, George C.; Maxwell, Alison M.; Naing, Zun Zar Chi; Pittman, Maureen; Reddy, Nishith R.; Schwarz, Daniel M. C.; Wassarman, Douglas R.; Wu, Taia S.; Barrero, Daniel; Caggiano, Christa; Catching, Adam; Cavazos, Taylor B.; Estes, Laurel S.; Faust, Bryan; Fink, Elissa A.; Goldman, Miriam A.; Gomez, Yessica K.; Gordon, M. Grace; Gunsalus, Laura M.; Hoppe, Nick; Jaime-Garza, Maru; Johnson, Matthew C.; Jones, Matthew G.; Kung, Andrew F.; Lopez, Kyle E.; Lumpe, Jared; Martyn, Calla; McCarthy, Elizabeth E.; Miller-Vedam, Lakshmi E.; Navarro, Erik J.; Palar, Aji; Pellegrino, Jenna; Saylor, Wren; Stephens, Christina A.; Strickland, Jack; Torosyan, Hayarpi; Wankowicz, Stephanie A.; Wong, Daniel R.; Wong, Garrett; Redding, Sy; Chow, Eric D.; DeGrado, William F.; Kampmann, Martin

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lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

NATURE PROTOCOLS

IF16

2020-07-08

OAAI

Gordon, M. Grace; Inoue, Fumitaka; Martin, Beth; Schubach, Max; Agarwal, Vikram; Whalen, Sean; Feng, Shiyun; Zhao, Jingjing; Ashuach, Tal; Ziffra, Ryan; Kreimer, Anat; Georgakopoulous-Soares, Ilias; Yosef, Nir; Ye, Chun Jimmie; Pollard, Katherine S.; Shendure, Jay; Kircher, Martin; Ahituv, Nadav

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A suite of automated sequence analyses reduces the number of candidate deleterious variants and reveals a difference between probands and unaffected siblings

GENETICS IN MEDICINE

IF6.2

2019-08-01

OAAI

Gu, Fangning; Wu, Anchi; Gordon, M. Grace; Vlahos, Lukas; Macnamara, Shane; Burke, Elizabeth; Malicdan, May C.; Adams, David R.; Tifft, Cynthia J.; Toro, Camilo; Gahl, William A.; Markello, Thomas C.

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Research Directions