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J

Joseph Bergenstråhle

Royal Institute of Technology

17H-index
41Paper Count
4.7KCitation Count
Published Papers 13
Publication Date
The spatial landscape of clonal somatic copy number alterations in benign and malignant prostate epithelia
err2023-06-02
err0
PREAI
errErickson, Andrew; He, Mengxiao; Berglund, Emelie; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Ludvig; Bergenstrahle, Joseph; Larsson, Ludvig; Galicia, Leire Alonso; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Doultsinos, Dimitrios; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D.; Lundeberg, Joakim
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The spatial landscape of gene expression isoforms in tissue sections
err2023-03-17
err17
errOAAI
errLebrigand, Kevin; Bergenstrahle, Joseph; Thrane, Kim; Mollbrink, Annelie; Meletis, Konstantinos; Barbry, Pascal; Waldmann, Rainer; Lundeberg, Joakim
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A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung
err2023-01-16
err20
errOAAI
errSountoulidis, Alexandros; Marco Salas, Sergio; Braun, Emelie; Avenel, Christophe; Bergenstrahle, Joseph; Theelke, Jonas; Vicari, Marco; Czarnewski, Paulo; Liontos, Andreas; Abalo, Xesus; Andrusivova, Zaneta; Mirzazadeh, Reza; Asp, Michaela; Li, Xiaofei; Hu, Lijuan; Sariyar, Sanem; Martinez Casals, Anna; Ayoglu, Burcu; Firsova, Alexandra; Michaelsson, Jakob; Lundberg, Emma; Waehlby, Carolina; Sundstroem, Erik; Linnarsson, Sten; Lundeberg, Joakim; Nilsson, Mats; Samakovlis, Christos
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The spatial landscape of clonal somatic mutations in benign and malignant tissue
err2022-05-15
err0
PREAI
errErickson, Andrew; Berglund, Emelie; He, Mengxiao; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Bergenstrahle, Ludvig; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Joseph; Larsson, Ludvig; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D.
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Super-resolved spatial transcriptomics by deep data fusion
err2021-11-29
err66
errOAAI
errBergenstrahle, Ludvig; He, Bryan; Bergenstrahle, Joseph; Abalo, Xesus; Mirzazadeh, Reza; Thrane, Kim; Ji, Andrew L.; Andersson, Alma; Larsson, Ludvig; Stakenborg, Nathalie; Boeckxstaens, Guy; Khavari, Paul; Zou, James; Lundeberg, Joakim; Maaskola, Jonas
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Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
err2021-03-02
err228
errOAAI
errMuus, Christoph; Luecken, Malte D.; Eraslan, Gokcen; Sikkema, Lisa; Waghray, Avinash; Heimberg, Graham; Kobayashi, Yoshihiko; Vaishnav, Eeshit Dhaval; Subramanian, Ayshwarya; Smillie, Christopher; Jagadeesh, Karthik A.; Duong, Elizabeth Thu; Fiskin, Evgenij; Triglia, Elena Torlai; Ansari, Meshal; Cai, Peiwen; Lin, Brian; Buchanan, Justin; Chen, Sijia; Shu, Jian; Haber, Adam L.; Chung, Hattie; Montoro, Daniel T.; Adams, Taylor; Aliee, Hananeh; Allon, Samuel J.; Andrusivova, Zaneta; Angelidis, Ilias; Ashenberg, Orr; Bassler, Kevin; Becavin, Christophe; Benhar, Inbal; Bergenstrahle, Joseph; Bergenstrahle, Ludvig; Bolt, Liam; Braun, Emelie; Bui, Linh T.; Callori, Steven; Chaffin, Mark; Chichelnitskiy, Evgeny; Chiou, Joshua; Conlon, Thomas M.; Cuoco, Michael S.; Cuomo, Anna S. E.; Deprez, Marie; Duclos, Grant; Fine, Denise; Fischer, David S.; Ghazanfar, Shila; Gillich, Astrid; Giotti, Bruno; Gould, Joshua; Guo, Minzhe; Gutierrez, Austin J.; Habermann, Arun C.; Harvey, Tyler; He, Peng; Hou, Xiaomeng; Hu, Lijuan; Hu, Yan; Jaiswal, Alok; Ji, Lu; Jiang, Peiyong; Kapellos, Theodoros S.; Kuo, Christin S.; Larsson, Ludvig; Leney-Greene, Michael A.; Lim, Kyungtae; Litvinukova, Monika; Ludwig, Leif S.; Lukassen, Soeren; Luo, Wendy; Maatz, Henrike; Madissoon, Elo; Mamanova, Lira; Manakongtreecheep, Kasidet; Leroy, Sylvie; Mayr, Christoph H.; Mbano, Ian M.; McAdams, Alexi M.; Nabhan, Ahmad N.; Nyquist, Sarah K.; Penland, Lolita; Poirion, Olivier B.; Poli, Sergio; Qi, CanCan; Queen, Rachel; Reichart, Daniel; Rosas, Ivan; Schupp, Jonas C.; Shea, Conor, V; Shi, Xingyi; Sinha, Rahul; Sit, Rene, V; Slowikowski, Kamil; Slyper, Michal; Smith, Neal P.; Sountoulidis, Alex; Strunz, Maximilian; Sullivan, Travis B.; Sun, Dawei; Talavera-Lopez, Carlos; Tan, Peng; Tantivit, Jessica; Travaglini, Kyle J.; Tucker, Nathan R.; Vernon, Katherine A.; Wadsworth, Marc H.; Waldman, Julia; Wang, Xiuting; Xu, Ke; Yan, Wenjun; Zhao, William; Ziegler, Carly G. K.
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Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection
err2020-12-08
err10
errOAAI
errPalsson, Sandra Axberg; Dondalska, Aleksandra; Bergenstrahle, Joseph; Rolfes, Caroline; Bjork, Albin; Sedano, Laura; Power, Ultan F.; Rameix-Welti, Marie-Anne; Lundeberg, Joakim; Wahren-Herlenius, Marie; Mastrangelo, Peter; Eleouet, Jean-Francois; Le Goffic, Ronan; Galloux, Marie; Spetz, Anna-Lena
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Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
err2020-10-09
err257
errOAAI
errAndersson, Alma; Bergenstrahle, Joseph; Asp, Michaela; Bergenstrahle, Ludvig; Jurek, Aleksandra; Fernandez Navarro, Jose; Lundeberg, Joakim
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Seamless integration of image and molecular analysis for spatial transcriptomics workflows
err2020-07-16
err179
errOAAI
errBergenstrahle, Joseph; Larsson, Ludvig; Lundeberg, Joakim
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Spatially Resolved Transcriptomes-Next Generation Tools for Tissue Exploration
err2020-05-04
err402
errOAAI
errAsp, Michaela; Bergenstrahle, Joseph; Lundeberg, Joakim
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A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection
err2019-09-12
err21
errOAAI
errPoux, Candice; Dondalska, Aleksandra; Bergenstrahle, Joseph; Palsson, Sandra; Contreras, Vanessa; Arasa, Claudia; Jarver, Peter; Albert, Jan; Busse, David C.; LeGrand, Roger; Lundeberg, Joakim; Tregoning, John S.; Spetz, Anna-Lena
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Single-Stranded Nucleic Acids Regulate TLR3/4/7 Activation through Interference with Clathrin-Mediated Endocytosis
err2018-10-26
err16
errOAAI
errJarver, Peter; Dondalska, Aleksandra; Poux, Candice; Sandberg, AnnSofi; Bergenstrahle, Joseph; Skold, Annette E.; Dereuddre-Bosquet, Nathalie; Martinon, Frederic; Palsson, Sandra; Zaghloul, Eman; Brodin, David; Sander, Birgitta; Lennox, Kim A.; Behlke, Mark A.; EL-Andaloussi, Samir; Lehtio, Janne; Lundeberg, Joakim; LeGrand, Roger; Spetz, Anna-Lena
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Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
err2018-06-20
err352
errOAAI
errBerglund, Emelie; Maaskola, Jonas; Schultz, Niklas; Friedrich, Stefanie; Marklund, Maja; Bergenstrahle, Joseph; Tarish, Firas; Tanoglidi, Anna; Vickovic, Sanja; Larsson, Ludvig; Salmen, Fredrik; Ogris, Christoph; Wallenborg, Karolina; Lagergren, Jens; Stahl, Patrik; Sonnhammer, Erik; Helleday, Thomas; Lundeberg, Joakim
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