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Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols Forry, Samuel P.; Servetas, Stephanie L.; Kralj, Jason G.; Soh, Keng; Hadjithomas, Michalis; Cano, Raul; Carlin, Martha; de Amorim, Maria G.; Auch, Benjamin; Bakker, Matthew G.; Bartelli, Thais F.; Bustamante, Juan P.; Cassol, Ignacio; Chalita, Mauricio; Dias-Neto, Emmanuel; Del Duca, Aaron; Gohl, Daryl M.; Kazantseva, Jekaterina; Haruna, Muyideen T.; Menzel, Peter; Moda, Bruno S.; Neuberger-Castillo, Lorieza; Nunes, Diana N.; Patel, Isha R.; Peralta, Rodrigo D.; Saliou, Adrien; Schwarzer, Rolf; Sevilla, Samantha; Takenaka, Isabella K. T. M.; Wang, Jeremy R.; Knight, Rob; Gevers, Dirk; Jackson, Scott A. Share Save
Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics Tierney, Braden T.; Van den Abbeele, Pieter; Al-Ghalith, Gabriel A.; Verstrepen, Lynn; Ghyselinck, Jonas; Calatayud, Marta; Marzorati, Massimo; Gadir, Azza A.; Daisley, Brendan; Reid, Gregor; Bron, Peter A.; Gevers, Dirk; Dhir, Raja; Simmons, Sheri L. Share Save
Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas Britton, Graham J.; Contijoch, Eduardo J.; Spindler, Matthew P.; Aggarwala, Varun; Dogan, Belgin; Bongers, Gerold; San Mateo, Lani; Baltus, Andrew; Das, Anuk; Gevers, Dirk; Borody, Thomas J.; Kaakoush, Nadeem O.; Kamm, Michael A.; Mitchell, Hazel; Paramsothy, Sudarshan; Clemente, Jose C.; Colombel, Jean-Frederic; Simpson, Kenneth W.; Dubinsky, Marla C.; Grinspan, Ari; Faith, Jeremiah J. Share Save
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Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice Britton, Graham J.; Contijoch, Eduardo J.; Mogno, Ilaria; Vennaro, Olivia H.; Llewellyn, Sean R.; Ng, Ruby; Li, Zhihua; Mortha, Arthur; Merad, Miriam; Das, Anuk; Gevers, Dirk; McGovern, Dermot P. B.; Singh, Namita; Braun, Jonathan; Jacobs, Jonathan P.; Clemente, Jose C.; Grinspan, Ari; Sands, Bruce E.; Colombel, Jean-Frederic; Dubinsky, Marla C.; Faith, Jeremiah J. Share Save
The classroom microbiome and asthma morbidity in children attending 3 inner-city schools Lai, Peggy S.; Kolde, Raivo; Franzosa, Eric A.; Gaffin, Jonathan M.; Baxi, Sachin N.; Sheehan, William J.; Gold, Diane R.; Gevers, Dirk; Xavier, Ramnik J.; Phipatanakul, Wanda Share Save
Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer Boernigen, Daniela; Ren, Boyu; Pickard, Robert; Li, Jingfeng; Ozer, Enver; Hartmann, Erica M.; Xiao, Weihong; Tickle, Timothy; Rider, Jennifer; Gevers, Dirk; Franzosa, Eric A.; Davey, Mary Ellen; Gillison, Maura L.; Huttenhower, Curtis Share Save
Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment Hsu, Tiffany; Joice, Regina; Vallarino, Jose; Abu-Ali, Galeb; Hartmann, Erica M.; Shafquat, Afrah; DuLong, Casey; Baranowski, Catherine; Gevers, Dirk; Green, Jessica L.; Morgan, Xochitl C.; Spengle, John D.; Huttenhower, Curtis Share Save
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability Yassour, Moran; Vatanen, Tommi; Siljander, Heli; Hamalainen, Anu-Maaria; Harkonen, Taina; Ryhanen, Samppa J.; Franzosa, Eric A.; Vlamakis, Hera; Huttenhower, Curtis; Gevers, Dirk; Lander, Eric S.; Knip, Mikael; Xavier, Ramnik J. Share Save
Gene-Microbiome Interactions Underlying the Onset and the Clinical Phenotypes of Inflammatory Bowel Disease Imhann, Floris; Vila, Arnau Vich; Bonder, Marc Jan; Gevers, Dirk; Fu, Jingyuan; Visschedijk, Marijn C.; Spekhorst, Lieke M.; Franke, Lude; van Dullemen, Hendrik; Ter Steege, Rinze; Huttenhower, Curtis; Dijkstra, Gerard; Xavier, Ramnik; Wijmenga, Cisca; Festen, Eleonora A.; Zhernakova, Alexandra; Weersma, Rinse K. Share Save
Characterization of Intestinal Microbiota in Ulcerative Colitis Patients with and without Primary Sclerosing Cholangitis Kevans, D.; Tyler, A. D.; Holm, K.; Jorgensen, K. K.; Vatn, M. H.; Karlsen, T. H.; Kaplan, G. G.; Eksteen, B.; Gevers, D.; Hov, J. R.; Silverberg, M. S. Share Save
The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids Fu, Jingyuan; Bonder, Marc Jan; Cenit, Maria Carmen; Tigchelaar, Ettje F.; Maatman, Astrid; Dekens, Jackie A. M.; Brandsma, Eelke; Marczynska, Joanna; Imhann, Floris; Weersma, Rinse K.; Franke, Lude; Poon, Tiffany W.; Xavier, Ramnik J.; Gevers, Dirk; Hofker, Marten H.; Wijmenga, Cisca; Zhernakova, Alexandra Share Save
Host genetic variation impacts microbiome composition across human body sites Blekhman, Ran; Goodrich, Julia K.; Huang, Katherine; Sun, Qi; Bukowski, Robert; Bell, Jordana T.; Spector, Timothy D.; Keinan, Alon; Ley, Ruth E.; Gevers, Dirk; Clark, Andrew G. Share Save
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Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease Morgan, Xochitl C.; Kabakchiev, Boyko; Waldron, Levi; Tyler, Andrea D.; Tickle, Timothy L.; Milgrom, Raquel; Stempak, Joanne M.; Gevers, Dirk; Xavier, Ramnik J.; Silverberg, Mark S.; Huttenhower, Curtis Share Save
Pediatric Crohn disease patients exhibit specific Heal transcriptome and microbiome signature (vol 124, pg 3617, 2014) Haberman, Yael; Tickle, Timothy L.; Dexheimer, Phillip J.; Kim, Mi-Ok; Tang, Dora; Karns, Rebekah; Baldassano, Robert N.; Noe, Joshua D.; Rosh, Joel; Markowitz, James; Heyman, Melvin B.; Griffiths, Anne M.; Crandall, Wallace V.; Mack, David R.; Baker, Susan S.; Huttenhower, Curtis; Keljo, David J.; Hyams, Jeffrey S.; Kugathasan, Subra; Walters, Thomas D.; Aronow, Bruce; Xavier, Ramnik J.; Gevers, Dirk; Denson, Lee A. Share Save
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature Haberman, Yael; Tickle, Timothy L.; Dexheimer, Phillip J.; Kim, Mi-Ok; Tang, Dora; Karns, Rebekah; Baldassano, Robert N.; Noe, Joshua D.; Rosh, Joel; Markowitz, James; Heyman, Melvin B.; Griffiths, Anne M.; Crandall, Wallace V.; Mack, David R.; Baker, Susan S.; Huttenhower, Curtis; Keljo, David J.; Hyams, Jeffrey S.; Kugathasan, Subra; Walters, Thomas D.; Aronow, Bruce; Xavier, Ramnik J.; Gevers, Dirk; Denson, Lee A. Share Save
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